Wall clock time and date at job start Mon Mar 30 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47666 * 119.99742 * 2 1 4 4 C 1.39716 * 119.99678 * 180.02562 * 3 2 1 5 5 C 1.37596 * 120.00767 * 180.02562 * 4 3 2 6 6 C 1.39745 * 119.99289 * 359.97438 * 5 4 3 7 7 C 1.47694 * 120.00208 * 179.97438 * 6 5 4 8 8 O 1.21570 * 119.99976 * 351.49152 * 7 6 5 9 9 N 1.34779 * 120.00050 * 171.48908 * 7 6 5 10 10 C 1.47576 * 134.49237 * 181.89638 * 9 7 6 11 11 C 1.53953 * 86.11496 * 155.36147 * 10 9 7 12 12 O 1.42900 * 113.73946 * 269.15714 * 11 10 9 13 13 C 1.50693 * 113.73901 * 137.95660 * 11 10 9 14 14 H 1.07998 * 120.00541 * 17.16336 * 13 11 10 15 15 C 1.37885 * 119.99629 * 197.15964 * 13 11 10 16 16 N 1.31514 * 119.99733 * 191.82563 * 15 13 11 17 17 Si 1.86793 * 120.00067 * 11.83313 * 15 13 11 18 18 H 1.48503 * 109.47157 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.47051 * 299.99633 * 17 15 13 20 20 H 1.48503 * 109.47375 * 59.99418 * 17 15 13 21 21 C 1.47818 * 134.45355 * 1.77042 * 9 7 6 22 22 C 1.39741 * 119.99488 * 0.25251 * 6 5 4 23 23 C 1.37604 * 119.99552 * 359.51454 * 22 6 5 24 24 H 1.08007 * 120.00446 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00431 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00062 * 180.02562 * 2 1 3 27 27 H 1.08002 * 119.98939 * 0.02562 * 4 3 2 28 28 H 1.07992 * 120.00390 * 180.02562 * 5 4 3 29 29 H 1.09008 * 113.76586 * 41.06628 * 10 9 7 30 30 H 1.08996 * 113.77453 * 269.66006 * 10 9 7 31 31 H 0.96705 * 113.99854 * 176.86236 * 12 11 10 32 32 H 0.96999 * 120.00420 * 354.87172 * 16 15 13 33 33 H 1.08999 * 113.76830 * 90.37855 * 21 9 7 34 34 H 1.08996 * 113.83648 * 318.91199 * 21 9 7 35 35 H 1.07998 * 120.00377 * 179.72184 * 22 6 5 36 36 H 1.07997 * 120.00107 * 180.23163 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4623 1.2788 -0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6806 0.0005 7 6 4.1902 4.9597 0.0017 8 8 5.3958 4.9654 0.1579 9 7 3.5275 6.1206 -0.1705 10 6 3.9296 7.5378 -0.2586 11 6 2.6291 7.7486 -1.0552 12 8 2.7880 7.5952 -2.4670 13 6 1.8851 9.0045 -0.6807 14 1 2.3894 9.7886 -0.1355 15 6 0.5606 9.1524 -1.0341 16 7 -0.0236 10.3250 -0.9192 17 14 -0.4041 7.6871 -1.6757 18 1 -1.7955 8.1062 -1.9818 19 1 0.2411 7.1718 -2.9100 20 1 -0.4250 6.6183 -0.6449 21 6 2.1060 6.4845 -0.3493 22 6 2.0543 3.6805 0.0059 23 6 1.3664 2.4887 0.0005 24 1 -0.5401 0.9353 0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8668 -0.9353 -0.0004 27 1 4.0021 0.3434 -0.0014 28 1 5.2303 2.4703 -0.0008 29 1 4.8346 7.7021 -0.8436 30 1 3.9439 8.0510 0.7029 31 1 1.9645 7.6795 -2.9669 32 1 0.4538 11.0674 -0.5170 33 1 1.5836 6.6876 0.5855 34 1 1.5578 5.8094 -1.0065 35 1 1.5142 4.6157 0.0108 36 1 0.2865 2.4886 0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193138980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:59 Heat of formation + Delta-G solvation = -8.349721 kcal Electronic energy + Delta-G solvation = -20586.813183 eV Core-core repulsion = 17423.455728 eV Total energy + Delta-G solvation = -3163.357456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75496 -40.16665 -38.97904 -36.11456 -35.11398 -34.66632 -32.34756 -31.15995 -29.94102 -27.64082 -26.95324 -24.74372 -23.64215 -21.97418 -20.80209 -20.56663 -19.95794 -18.51561 -18.09365 -17.27031 -16.84439 -16.55996 -16.00950 -15.83080 -15.52262 -15.23488 -14.85050 -14.62300 -14.28158 -14.18855 -14.03576 -13.94992 -13.70137 -13.25429 -12.91428 -12.44754 -12.25611 -12.19374 -11.82013 -11.77434 -11.35894 -11.30650 -11.13492 -10.89844 -10.34352 -10.05590 -9.82370 -9.20900 -8.84270 -6.61765 -0.47495 0.35997 1.26246 1.40782 1.46707 1.59946 1.78188 2.00992 2.41568 2.88780 2.91727 3.17570 3.48420 3.64142 3.75168 3.82669 3.91768 4.21344 4.24608 4.32079 4.34760 4.44590 4.48708 4.52190 4.63203 4.80877 4.92712 4.95299 5.01411 5.22358 5.32628 5.36543 5.56394 5.65395 5.80697 5.89879 5.91563 6.38459 6.60087 6.90841 6.97044 7.24944 8.51260 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005946 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.244918 B = 4707.982491 C = 5867.602940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.141 4.141 3 C -0.032 4.032 4 C -0.117 4.117 5 C -0.070 4.070 6 C -0.154 4.154 7 C 0.566 3.434 8 O -0.593 6.593 9 N -0.628 5.628 10 C 0.123 3.877 11 C 0.192 3.808 12 O -0.573 6.573 13 C -0.622 4.622 14 H 0.034 0.966 15 C -0.006 4.006 16 N -0.920 5.920 17 Si 1.064 2.936 18 H -0.285 1.285 19 H -0.247 1.247 20 H -0.230 1.230 21 C 0.064 3.936 22 C -0.104 4.104 23 C -0.128 4.128 24 H 0.106 0.894 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.161 0.839 28 H 0.129 0.871 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.375 0.625 32 H 0.258 0.742 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 -21.462 1.331 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C -0.032 4.032 4 C -0.135 4.135 5 C -0.089 4.089 6 C -0.157 4.157 7 C 0.359 3.641 8 O -0.476 6.476 9 N -0.360 5.360 10 C 0.001 3.999 11 C 0.151 3.849 12 O -0.383 6.383 13 C -0.660 4.660 14 H 0.052 0.948 15 C -0.207 4.207 16 N -0.554 5.554 17 Si 0.883 3.117 18 H -0.211 1.211 19 H -0.172 1.172 20 H -0.154 1.154 21 C -0.058 4.058 22 C -0.123 4.123 23 C -0.146 4.146 24 H 0.124 0.876 25 H 0.146 0.854 26 H 0.158 0.842 27 H 0.178 0.822 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.226 0.774 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.835 -22.128 1.016 22.332 hybrid contribution 1.394 1.794 0.687 2.374 sum -1.441 -20.334 1.702 20.456 Atomic orbital electron populations 1.24787 0.95426 1.03746 0.95295 1.21937 0.95758 0.95087 1.03134 1.19692 0.93526 0.94236 0.95795 1.21494 0.93587 0.98064 1.00330 1.21264 1.00642 0.91099 0.95872 1.19919 0.94610 0.92352 1.08827 1.18535 0.86354 0.83651 0.75570 1.90677 1.15685 1.87663 1.53611 1.50005 1.10631 1.05549 1.69835 1.23251 0.98432 0.78698 0.99515 1.20377 0.92983 0.91792 0.79708 1.86371 1.37972 1.94922 1.19025 1.22296 0.98199 1.03599 1.41893 0.94775 1.27317 0.96465 1.02779 0.94152 1.70943 1.42469 1.01616 1.40333 0.83964 0.75764 0.73002 0.78964 1.21055 1.17204 1.15362 1.24766 0.82854 0.96291 1.01849 1.22013 0.92771 1.00603 0.96869 1.21563 1.01442 0.90844 1.00735 0.87621 0.85381 0.84245 0.82187 0.85297 0.91465 0.88356 0.77415 0.93246 0.87367 0.88556 0.84211 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 14.15 66.65 0.94 -0.75 16 2 C -0.14 -1.92 9.90 23.59 0.23 -1.69 16 3 C -0.03 -0.64 5.87 -20.07 -0.12 -0.76 16 4 C -0.12 -2.46 9.76 22.48 0.22 -2.24 16 5 C -0.07 -1.97 9.57 22.48 0.22 -1.76 16 6 C -0.15 -5.13 5.88 -20.05 -0.12 -5.25 16 7 C 0.57 23.26 7.98 86.74 0.69 23.95 16 8 O -0.59 -27.75 17.09 -3.94 -0.07 -27.82 16 9 N -0.63 -25.69 3.61 -843.22 -3.04 -28.73 16 10 C 0.12 5.34 8.23 86.49 0.71 6.05 16 11 C 0.19 8.61 1.07 -10.88 -0.01 8.60 16 12 O -0.57 -25.83 13.46 -148.98 -2.01 -27.83 16 13 C -0.62 -32.27 9.04 25.60 0.23 -32.04 16 14 H 0.03 1.97 8.05 -2.91 -0.02 1.94 16 15 C -0.01 -0.31 5.44 84.66 0.46 0.15 16 16 N -0.92 -52.52 13.70 21.45 0.29 -52.23 16 17 Si 1.06 40.89 24.65 68.60 1.69 42.58 16 18 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.25 -8.25 5.75 99.48 0.57 -7.68 16 20 H -0.23 -7.27 6.39 99.48 0.64 -6.63 16 21 C 0.06 2.43 3.24 86.44 0.28 2.71 16 22 C -0.10 -2.95 9.06 22.48 0.20 -2.75 16 23 C -0.13 -2.82 9.38 22.48 0.21 -2.61 16 24 H 0.11 1.11 6.02 -2.91 -0.02 1.09 16 25 H 0.13 0.84 8.06 -2.91 -0.02 0.81 16 26 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 27 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.13 3.70 7.66 -2.91 -0.02 3.67 16 29 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.10 4.07 8.09 -2.39 -0.02 4.05 16 31 H 0.37 15.21 5.86 -74.05 -0.43 14.78 16 32 H 0.26 15.10 8.72 -92.71 -0.81 14.29 16 33 H 0.11 3.89 8.08 -2.39 -0.02 3.87 16 34 H 0.10 3.22 5.08 -2.39 -0.01 3.21 16 35 H 0.14 3.96 3.88 -2.91 -0.01 3.95 16 36 H 0.16 2.52 6.15 -2.91 -0.02 2.50 16 Total: -1.00 -68.18 300.25 1.46 -66.72 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.44 Total: 35.68 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 4.15 Total: -8.37 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.75 Total: -80.96 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -2.07 Total: -55.65 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.69 Total: 42.58 kcal Total: -68.18 1.46 -66.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.372 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds