Wall clock time and date at job start Mon Mar 30 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37952 * 119.84591 * 179.67802 * 4 3 2 6 6 C 1.38365 * 120.14802 * 0.61944 * 5 4 3 7 7 C 1.50696 * 119.84884 * 179.69659 * 6 5 4 8 8 C 1.52998 * 109.47235 * 269.98146 * 7 6 5 9 9 C 1.50707 * 109.47241 * 179.97438 * 8 7 6 10 10 O 1.20826 * 119.99481 * 0.02562 * 9 8 7 11 11 O 1.34223 * 120.00117 * 179.97438 * 9 8 7 12 12 C 1.45198 * 116.99927 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46971 * 180.02562 * 12 11 9 14 14 C 1.50708 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99825 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99609 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99742 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00473 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46566 * 90.00184 * 18 16 14 20 20 H 1.48500 * 109.47140 * 209.99899 * 18 16 14 21 21 H 1.48498 * 109.47005 * 330.00287 * 18 16 14 22 22 C 1.38366 * 120.30592 * 359.68013 * 6 5 4 23 23 C 1.37947 * 120.14940 * 359.97438 * 22 6 5 24 24 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.92876 * 180.29624 * 5 4 3 26 26 H 1.09004 * 109.46695 * 29.98272 * 7 6 5 27 27 H 1.08997 * 109.47414 * 149.97949 * 7 6 5 28 28 H 1.08996 * 109.47541 * 299.99980 * 8 7 6 29 29 H 1.09002 * 109.47189 * 60.00332 * 8 7 6 30 30 H 1.08998 * 109.46906 * 300.00240 * 12 11 9 31 31 H 1.08998 * 109.47366 * 60.00497 * 12 11 9 32 32 H 1.09006 * 109.46942 * 299.99356 * 13 12 11 33 33 H 1.09000 * 109.47769 * 60.00078 * 13 12 11 34 34 H 0.96995 * 120.00282 * 179.97438 * 17 16 14 35 35 H 1.07993 * 119.92703 * 180.02562 * 22 6 5 36 36 H 1.08003 * 120.07687 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1976 1.1841 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3542 1.4246 -0.2361 9 6 8.8613 1.4249 -0.2355 10 8 9.4654 0.3927 -0.0640 11 8 9.5323 2.5716 -0.4263 12 6 10.9823 2.4968 -0.4137 13 6 11.5669 3.8916 -0.6453 14 6 13.0719 3.8138 -0.6328 15 1 13.5623 2.8646 -0.4751 16 6 13.8227 4.9545 -0.8228 17 7 15.1360 4.8866 -0.8125 18 14 12.9745 6.5963 -1.0964 19 1 12.7497 7.2613 0.2122 20 1 13.8301 7.4593 -1.9498 21 1 11.6694 6.3732 -1.7689 22 6 4.6489 -0.1954 -1.1838 23 6 3.2694 -0.1976 -1.1909 24 1 2.7328 0.3633 2.1140 25 1 5.1923 0.3506 2.1046 26 1 7.2076 -0.3594 0.9625 27 1 7.2078 -0.6511 -0.7934 28 1 6.9909 1.7856 -1.1983 29 1 6.9908 2.0773 0.5576 30 1 11.3181 2.1181 0.5516 31 1 11.3184 1.8258 -1.2042 32 1 11.2310 4.2706 -1.6106 33 1 11.2308 4.5624 0.1454 34 1 15.6642 5.6890 -0.9465 35 1 5.1926 -0.3483 -2.1042 36 1 2.7332 -0.3517 -2.1157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194499834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:31 Heat of formation + Delta-G solvation = -71.130578 kcal Electronic energy + Delta-G solvation = -18677.952915 eV Core-core repulsion = 15511.873077 eV Total energy + Delta-G solvation = -3166.079838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44574 -40.43584 -37.90583 -37.54208 -35.36914 -35.04857 -32.80111 -31.96928 -31.20239 -27.61398 -26.16816 -23.65929 -23.19694 -22.51072 -21.44783 -19.85591 -19.23022 -18.37634 -17.72062 -17.22573 -16.62209 -16.36830 -16.07782 -15.48372 -15.43377 -15.10305 -14.85587 -14.45869 -14.32388 -14.24122 -13.95954 -13.76647 -13.63551 -13.19945 -13.07640 -12.74167 -12.44738 -12.36251 -12.27107 -12.19899 -11.79655 -11.75656 -11.53028 -11.38479 -11.36254 -10.79555 -9.90152 -9.69850 -8.32803 -6.40989 -0.20602 0.47443 1.28401 1.40088 1.41839 1.54425 1.61259 1.77170 2.00110 2.36031 2.88819 2.93003 3.02165 3.63178 3.90475 3.96487 4.04065 4.19961 4.21350 4.25523 4.27809 4.46855 4.56141 4.64994 4.68963 4.86577 4.92894 5.10875 5.16449 5.22974 5.31259 5.32163 5.40416 5.53245 5.67502 5.67512 5.92639 6.17233 6.44229 6.65469 6.81584 7.24215 8.83192 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038697 B = 0.002482 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.400212 B =11277.192313 C =11677.290431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.280 3.720 3 C -0.050 4.050 4 C -0.065 4.065 5 C -0.116 4.116 6 C -0.048 4.048 7 C -0.071 4.071 8 C -0.099 4.099 9 C 0.451 3.549 10 O -0.547 6.547 11 O -0.364 6.364 12 C 0.093 3.907 13 C -0.005 4.005 14 C -0.543 4.543 15 H 0.034 0.966 16 C 0.009 3.991 17 N -0.945 5.945 18 Si 0.955 3.045 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.242 1.242 22 C -0.116 4.116 23 C -0.065 4.065 24 H 0.146 0.854 25 H 0.151 0.849 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.270 0.730 35 H 0.151 0.849 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.140 -8.141 1.345 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.034 4.034 3 C -0.053 4.053 4 C -0.085 4.085 5 C -0.134 4.134 6 C -0.049 4.049 7 C -0.108 4.108 8 C -0.136 4.136 9 C 0.297 3.703 10 O -0.438 6.438 11 O -0.281 6.281 12 C 0.020 3.980 13 C -0.042 4.042 14 C -0.580 4.580 15 H 0.053 0.947 16 C -0.188 4.188 17 N -0.584 5.584 18 Si 0.777 3.223 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.165 1.165 22 C -0.134 4.134 23 C -0.085 4.085 24 H 0.164 0.836 25 H 0.169 0.831 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.534 -8.336 1.374 27.847 hybrid contribution 1.006 0.376 -0.043 1.075 sum -25.528 -7.960 1.331 26.774 Atomic orbital electron populations 1.81289 1.13648 1.10994 1.08985 1.26060 0.92955 0.92135 0.92280 1.16136 0.83052 1.09608 0.96519 1.21347 0.94414 0.95866 0.96875 1.21253 0.93396 0.99848 0.98912 1.20070 0.94869 0.96169 0.93809 1.20440 0.90547 0.94978 1.04875 1.21513 0.83610 1.00321 1.08155 1.24704 0.93455 0.80732 0.71459 1.90651 1.71910 1.34442 1.46766 1.86476 1.22800 1.36762 1.82028 1.22887 0.74511 0.99671 1.00959 1.19469 0.93661 0.92740 0.98350 1.21145 0.90810 0.95383 1.50708 0.94739 1.25986 0.95339 1.03749 0.93770 1.70045 1.06613 1.30912 1.50880 0.85588 0.79531 0.77837 0.79308 1.18812 1.20802 1.16525 1.21250 0.93399 0.99923 0.98841 1.21346 0.94413 0.95890 0.96858 0.83601 0.83126 0.89846 0.89855 0.85236 0.85229 0.92582 0.92589 0.94615 0.94709 0.92112 0.83134 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.26 18.54 19.00 0.35 -9.91 16 2 C 0.28 4.44 15.33 88.33 1.35 5.80 16 3 C -0.05 -0.53 5.73 -21.36 -0.12 -0.65 16 4 C -0.06 -0.54 9.76 22.54 0.22 -0.32 16 5 C -0.12 -0.91 9.68 22.23 0.22 -0.69 16 6 C -0.05 -0.44 5.14 -19.80 -0.10 -0.54 16 7 C -0.07 -0.87 4.63 29.85 0.14 -0.73 16 8 C -0.10 -1.41 5.79 29.85 0.17 -1.23 16 9 C 0.45 12.28 7.96 71.24 0.57 12.85 16 10 O -0.55 -18.49 15.73 21.96 0.35 -18.15 16 11 O -0.36 -12.09 10.22 -51.35 -0.52 -12.61 16 12 C 0.09 3.80 5.40 71.98 0.39 4.19 16 13 C 0.00 -0.22 4.42 29.85 0.13 -0.09 16 14 C -0.54 -30.84 9.66 25.60 0.25 -30.60 16 15 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 16 C 0.01 0.54 5.47 84.65 0.46 1.00 16 17 N -0.95 -58.08 13.96 21.45 0.30 -57.78 16 18 Si 0.96 42.47 27.47 68.60 1.88 44.36 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 22 C -0.12 -0.91 9.68 22.23 0.22 -0.70 16 23 C -0.06 -0.54 9.76 22.54 0.22 -0.32 16 24 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 25 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 26 H 0.08 1.12 8.04 -2.38 -0.02 1.10 16 27 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 28 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 31 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 32 H 0.04 1.59 7.20 -2.38 -0.02 1.57 16 33 H 0.03 1.52 7.57 -2.39 -0.02 1.51 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.15 0.73 8.06 -2.91 -0.02 0.70 16 36 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -72.69 327.01 7.49 -65.19 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: 1.03 Total: 0.93 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.11 Total: -12.04 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: 0.65 Total: -67.69 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.18 Total: -30.76 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.36 kcal Total: -72.69 7.49 -65.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194499834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.936 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds