Wall clock time and date at job start Mon Mar 30 2020 00:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48502 * 109.47051 * 239.99691 * 3 2 1 5 5 H 1.48497 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46963 * 119.99982 * 3 2 1 7 7 C 1.38797 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00009 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47123 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00122 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99555 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99231 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47022 * 180.02562 * 14 13 11 16 16 O 1.42897 * 109.47093 * 64.99848 * 15 14 13 17 17 C 1.42898 * 114.00017 * 179.97438 * 16 15 14 18 18 C 1.54894 * 110.48190 * 93.24436 * 17 16 15 19 19 C 1.55238 * 102.58338 * 156.67678 * 18 17 16 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47588 * 60.00115 * 10 9 7 24 24 H 1.09002 * 109.47212 * 299.99781 * 10 9 7 25 25 H 0.96989 * 120.00778 * 0.02562 * 13 11 10 26 26 H 1.09002 * 109.47199 * 60.00359 * 14 13 11 27 27 H 1.08998 * 109.47719 * 299.99814 * 14 13 11 28 28 H 1.08999 * 109.47003 * 305.00134 * 15 14 13 29 29 H 1.08999 * 109.47000 * 185.00328 * 15 14 13 30 30 H 1.09002 * 110.43427 * 330.70321 * 17 16 15 31 31 H 1.08996 * 110.75388 * 275.06031 * 18 17 16 32 32 H 1.08993 * 110.76071 * 38.44257 * 18 17 16 33 33 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 34 34 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 35 35 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 36 36 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 37 37 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 38 38 H 1.08996 * 110.07773 * 119.30576 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0021 11 6 1.9871 -5.3028 0.0030 12 8 0.7909 -5.5023 0.0030 13 7 2.8439 -6.3431 0.0037 14 6 2.3301 -7.7151 0.0051 15 6 3.5021 -8.6986 0.0063 16 8 4.2328 -8.5674 1.2273 17 6 5.3543 -9.4469 1.3309 18 6 6.6415 -8.7451 0.8309 19 6 7.7624 -9.5406 1.5524 20 6 7.1796 -9.8344 2.9502 21 6 5.6485 -9.7749 2.8093 22 1 -0.4849 0.8401 -0.0004 23 1 3.1236 -3.7310 0.8925 24 1 3.1250 -3.7318 -0.8875 25 1 3.8006 -6.1836 0.0040 26 1 1.7212 -7.8759 -0.8846 27 1 1.7217 -7.8744 0.8954 28 1 4.1595 -8.4816 -0.8356 29 1 3.1223 -9.7165 -0.0823 30 1 5.1743 -10.3614 0.7658 31 1 6.7353 -8.8357 -0.2512 32 1 6.6537 -7.6984 1.1347 33 1 8.6659 -8.9364 1.6351 34 1 7.9735 -10.4703 1.0239 35 1 7.5187 -9.0818 3.6619 36 1 7.4857 -10.8266 3.2820 37 1 5.2445 -8.9933 3.4527 38 1 5.2108 -10.7378 3.0723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194753200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:34 Heat of formation + Delta-G solvation = -104.048002 kcal Electronic energy + Delta-G solvation = -18246.534296 eV Core-core repulsion = 15214.471003 eV Total energy + Delta-G solvation = -3032.063293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.47678 -38.84575 -36.54336 -34.24751 -32.39489 -30.52593 -29.07154 -28.47295 -27.29675 -25.44190 -22.69496 -21.11661 -20.61523 -20.32027 -17.83660 -17.44594 -16.40306 -16.21766 -15.85739 -15.44743 -14.89809 -14.77492 -14.44875 -13.81712 -13.66510 -13.51003 -13.38398 -12.93977 -12.54463 -12.42954 -11.80909 -11.67599 -11.58963 -11.51168 -11.43155 -11.01183 -11.01097 -10.94000 -10.78171 -10.73712 -9.80125 -9.77473 -9.33082 -9.03047 -8.80704 -8.19620 -6.45883 -6.18207 -3.88437 3.08884 3.17199 3.25944 3.29802 3.32461 3.36938 3.80329 4.21334 4.23956 4.26409 4.53721 4.74265 4.87967 4.93540 5.10456 5.10756 5.13887 5.16686 5.22042 5.26138 5.30046 5.47860 5.54842 5.62140 5.66017 5.71201 5.82549 5.84658 5.90988 5.96188 5.96874 6.20140 6.67737 6.99145 7.62598 7.80017 8.38488 8.68970 9.26860 10.89214 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.003099 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.969521 B = 9033.270467 C = 9816.858398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.521 6.521 13 N -0.733 5.733 14 C 0.124 3.876 15 C 0.051 3.949 16 O -0.374 6.374 17 C 0.083 3.917 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.123 4.123 22 H 0.269 0.731 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.400 0.600 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.061 -21.293 1.716 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.395 6.395 13 N -0.388 5.388 14 C 0.000 4.000 15 C -0.026 4.026 16 O -0.293 6.293 17 C 0.025 3.975 18 C -0.186 4.186 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.161 4.161 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.234 0.766 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.824 -21.405 1.866 25.023 hybrid contribution 2.537 1.110 -0.216 2.778 sum 15.362 -20.296 1.650 25.507 Atomic orbital electron populations 1.70017 1.05948 1.27514 1.46876 1.24993 0.95032 0.99012 0.94576 0.86222 0.79221 0.81242 0.78785 1.19964 1.20833 1.19937 1.22837 0.94887 0.91710 1.58933 0.90990 1.85378 1.05047 0.96275 1.96714 1.23522 1.06476 0.95427 1.04900 1.20297 0.86501 0.86320 0.75141 1.90694 1.15388 1.85649 1.47801 1.45904 1.10067 1.05184 1.77654 1.21293 0.94829 0.80835 1.03053 1.22822 0.93520 0.98949 0.87320 1.88008 1.42106 1.61110 1.38091 1.23023 0.85675 0.92037 0.96793 1.23069 0.94694 1.00829 1.00010 1.22328 0.98048 0.99995 0.95780 1.22084 0.94690 1.01798 0.97498 1.22183 0.96030 1.02247 0.95651 0.92161 0.89215 0.89299 0.76587 0.90156 0.90795 0.92633 0.91839 0.91671 0.91478 0.90176 0.91331 0.91623 0.91424 0.91686 0.90285 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.50 9.50 30.94 0.29 -15.21 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 11 C 0.53 10.35 7.85 -10.98 -0.09 10.26 16 12 O -0.52 -12.20 15.86 5.56 0.09 -12.11 16 13 N -0.73 -10.48 5.50 -60.29 -0.33 -10.81 16 14 C 0.12 1.50 6.06 -4.04 -0.02 1.48 16 15 C 0.05 0.45 5.92 37.16 0.22 0.67 16 16 O -0.37 -3.89 10.00 -35.23 -0.35 -4.24 16 17 C 0.08 0.67 3.33 -25.07 -0.08 0.59 16 18 C -0.15 -1.10 6.65 -24.55 -0.16 -1.26 16 19 C -0.12 -0.77 6.84 -24.88 -0.17 -0.94 16 20 C -0.12 -0.79 6.80 -25.62 -0.17 -0.97 16 21 C -0.12 -0.95 6.56 -25.62 -0.17 -1.11 16 22 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 24 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 25 H 0.40 4.78 8.47 -40.82 -0.35 4.43 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -34.49 333.48 -8.51 -43.00 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.21 Total: -0.36 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.23 Total: -7.45 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.40 Total: -36.59 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.26 Total: -16.35 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.49 -8.51 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194753200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.044 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds