Wall clock time and date at job start Mon Mar 30 2020 00:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48502 * 109.47051 * 239.99691 * 3 2 1 5 5 H 1.48497 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46963 * 119.99982 * 3 2 1 7 7 C 1.38797 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00009 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47123 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00122 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99555 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99231 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47022 * 180.02562 * 14 13 11 16 16 O 1.42897 * 109.47093 * 64.99848 * 15 14 13 17 17 C 1.42898 * 114.00017 * 179.97438 * 16 15 14 18 18 C 1.54894 * 110.48190 * 93.24436 * 17 16 15 19 19 C 1.55238 * 102.58338 * 156.67678 * 18 17 16 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47588 * 60.00115 * 10 9 7 24 24 H 1.09002 * 109.47212 * 299.99781 * 10 9 7 25 25 H 0.96989 * 120.00778 * 0.02562 * 13 11 10 26 26 H 1.09002 * 109.47199 * 60.00359 * 14 13 11 27 27 H 1.08998 * 109.47719 * 299.99814 * 14 13 11 28 28 H 1.08999 * 109.47003 * 305.00134 * 15 14 13 29 29 H 1.08999 * 109.47000 * 185.00328 * 15 14 13 30 30 H 1.09002 * 110.43427 * 330.70321 * 17 16 15 31 31 H 1.08996 * 110.75388 * 275.06031 * 18 17 16 32 32 H 1.08993 * 110.76071 * 38.44257 * 18 17 16 33 33 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 34 34 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 35 35 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 36 36 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 37 37 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 38 38 H 1.08996 * 110.07773 * 119.30576 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0021 11 6 1.9871 -5.3028 0.0030 12 8 0.7909 -5.5023 0.0030 13 7 2.8439 -6.3431 0.0037 14 6 2.3301 -7.7151 0.0051 15 6 3.5021 -8.6986 0.0063 16 8 4.2328 -8.5674 1.2273 17 6 5.3543 -9.4469 1.3309 18 6 6.6415 -8.7451 0.8309 19 6 7.7624 -9.5406 1.5524 20 6 7.1796 -9.8344 2.9502 21 6 5.6485 -9.7749 2.8093 22 1 -0.4849 0.8401 -0.0004 23 1 3.1236 -3.7310 0.8925 24 1 3.1250 -3.7318 -0.8875 25 1 3.8006 -6.1836 0.0040 26 1 1.7212 -7.8759 -0.8846 27 1 1.7217 -7.8744 0.8954 28 1 4.1595 -8.4816 -0.8356 29 1 3.1223 -9.7165 -0.0823 30 1 5.1743 -10.3614 0.7658 31 1 6.7353 -8.8357 -0.2512 32 1 6.6537 -7.6984 1.1347 33 1 8.6659 -8.9364 1.6351 34 1 7.9735 -10.4703 1.0239 35 1 7.5187 -9.0818 3.6619 36 1 7.4857 -10.8266 3.2820 37 1 5.2445 -8.9933 3.4527 38 1 5.2108 -10.7378 3.0723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194753200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:34 Heat of formation + Delta-G solvation = -127.965260 kcal Electronic energy + Delta-G solvation = -18247.571427 eV Core-core repulsion = 15214.471003 eV Total energy + Delta-G solvation = -3033.100423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66881 -39.79893 -37.29646 -35.46581 -34.58222 -31.85769 -29.72136 -29.52125 -28.08112 -27.61704 -23.63801 -21.89017 -21.57569 -21.16507 -19.85053 -18.17475 -17.87228 -17.35002 -16.87621 -16.59941 -16.57270 -16.08883 -15.76428 -15.09584 -14.71990 -14.49165 -14.31928 -14.26267 -14.05346 -13.48713 -13.16955 -12.94606 -12.84987 -12.65503 -12.38965 -12.33972 -12.06828 -11.94922 -11.73811 -11.50088 -11.31612 -11.12679 -10.97687 -10.41495 -10.28484 -10.11712 -8.66944 -8.34277 -6.12791 1.27106 1.44474 1.47051 1.57165 1.61800 2.26954 2.32100 2.66221 2.99589 3.32759 3.66448 3.72615 3.89240 4.01396 4.08536 4.20026 4.29584 4.32751 4.46216 4.50664 4.54297 4.57815 4.61010 4.76829 4.78991 4.89078 4.98368 5.07438 5.21358 5.22299 5.30038 5.41544 5.43706 5.46859 6.19872 6.33932 6.50307 7.06592 7.24259 8.74848 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.003099 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.969521 B = 9033.270467 C = 9816.858398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.708 5.708 14 C 0.120 3.880 15 C 0.059 3.941 16 O -0.399 6.399 17 C 0.078 3.922 18 C -0.148 4.148 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.126 4.126 22 H 0.271 0.729 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.415 0.585 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.728 -22.121 1.275 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.362 5.362 14 C -0.004 4.004 15 C -0.018 4.018 16 O -0.318 6.318 17 C 0.021 3.979 18 C -0.186 4.186 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.164 4.164 22 H 0.080 0.920 23 H 0.124 0.876 24 H 0.129 0.871 25 H 0.251 0.749 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.549 -22.277 1.426 27.204 hybrid contribution 1.751 1.221 -0.057 2.135 sum 17.300 -21.056 1.369 27.286 Atomic orbital electron populations 1.70185 1.07996 1.28701 1.47925 1.26153 0.95993 1.03370 0.93684 0.84985 0.77789 0.75579 0.79516 1.18573 1.20329 1.18686 1.23181 0.95354 0.92015 1.59034 0.89935 1.85552 1.10570 0.99217 1.97052 1.23365 1.03537 0.94469 1.06668 1.20066 0.86232 0.86736 0.75179 1.90682 1.17345 1.86140 1.50455 1.45706 1.10234 1.05134 1.75170 1.21484 0.96400 0.79923 1.02544 1.22801 0.92552 0.98960 0.87482 1.87976 1.43009 1.62064 1.38796 1.23192 0.85162 0.92394 0.97138 1.23062 0.94841 1.00026 1.00698 1.22338 0.97681 1.00430 0.95447 1.22090 0.93764 1.02403 0.97729 1.22215 0.96926 1.01940 0.95303 0.91960 0.87582 0.87125 0.74861 0.89673 0.92437 0.90829 0.89421 0.89966 0.90505 0.91711 0.91068 0.90376 0.91936 0.90433 0.92300 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.73 13.22 21.65 0.29 -56.45 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -31.85 9.50 67.95 0.65 -31.20 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 11 C 0.53 20.54 7.85 87.66 0.69 21.23 16 12 O -0.57 -27.15 15.86 -3.02 -0.05 -27.20 16 13 N -0.71 -19.20 5.50 -463.05 -2.55 -21.75 16 14 C 0.12 2.73 6.06 86.38 0.52 3.26 16 15 C 0.06 0.89 5.92 71.98 0.43 1.31 16 16 O -0.40 -7.52 10.00 -148.98 -1.49 -9.01 16 17 C 0.08 1.10 3.33 31.67 0.11 1.20 16 18 C -0.15 -1.88 6.65 32.01 0.21 -1.67 16 19 C -0.12 -1.24 6.84 31.79 0.22 -1.02 16 20 C -0.12 -1.36 6.80 31.32 0.21 -1.15 16 21 C -0.13 -1.76 6.56 31.32 0.21 -1.56 16 22 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 23 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 24 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 25 H 0.41 8.93 8.47 -92.72 -0.79 8.15 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.08 0.87 7.84 -2.39 -0.02 0.85 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.06 1.05 8.07 -2.39 -0.02 1.03 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -76.55 333.48 1.46 -75.09 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.25 Total: 16.29 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.14 Total: -13.28 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.26 Total: -78.20 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.54 Total: -36.21 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -76.55 1.46 -75.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194753200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.877 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds