Wall clock time and date at job start Mon Mar 30 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 120.00291 * 2 1 4 4 H 1.48495 * 109.47305 * 240.00691 * 3 2 1 5 5 H 1.48508 * 109.46741 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47226 * 120.00295 * 3 2 1 7 7 C 1.38799 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00166 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00021 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47618 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99888 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00671 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00145 * 179.97438 * 13 11 10 15 15 C 1.53009 * 109.47212 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.46850 * 54.99935 * 15 14 13 17 17 C 1.52998 * 109.46634 * 295.00147 * 15 14 13 18 18 C 1.53009 * 109.46956 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46843 * 60.00175 * 18 17 15 20 20 C 1.53001 * 109.47050 * 300.00019 * 19 18 17 21 21 H 1.09008 * 109.47298 * 180.02562 * 20 19 18 22 22 O 1.42903 * 109.47171 * 299.99915 * 20 19 18 23 23 C 1.52997 * 109.47169 * 175.00320 * 15 14 13 24 24 H 0.96999 * 119.99920 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47409 * 59.99934 * 10 9 7 26 26 H 1.09004 * 109.47077 * 300.00254 * 10 9 7 27 27 H 0.97001 * 119.99709 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.47189 * 60.00269 * 14 13 11 29 29 H 1.09001 * 109.47669 * 299.99708 * 14 13 11 30 30 H 1.09006 * 109.47444 * 299.99295 * 17 15 14 31 31 H 1.08997 * 109.47366 * 60.00109 * 17 15 14 32 32 H 1.08997 * 109.47270 * 179.97438 * 18 17 15 33 33 H 1.08997 * 109.46854 * 299.99988 * 18 17 15 34 34 H 1.08999 * 109.46989 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47549 * 60.00238 * 19 18 17 36 36 H 0.96700 * 114.00311 * 300.00378 * 22 20 19 37 37 H 1.08997 * 109.47549 * 60.00043 * 23 15 14 38 38 H 1.08997 * 109.46932 * 299.99698 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1042 1.6963 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3303 -7.7150 0.0009 15 6 3.5023 -8.6986 0.0007 16 1 4.1600 -8.4801 0.8420 17 6 4.2840 -8.5602 -1.3072 18 6 5.4564 -9.5433 -1.3071 19 6 4.9239 -10.9720 -1.1800 20 6 4.1422 -11.1103 0.1280 21 1 3.7632 -12.1284 0.2188 22 8 5.0044 -10.8234 1.2309 23 6 2.9693 -10.1271 0.1276 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1244 -3.7313 -0.8905 27 1 3.8008 -6.1836 -0.0006 28 1 1.7207 -7.8755 -0.8884 29 1 1.7226 -7.8748 0.8916 30 1 3.6262 -8.7788 -2.1485 31 1 4.6637 -7.5425 -1.3976 32 1 6.0130 -9.4450 -2.2391 33 1 6.1140 -9.3244 -0.4659 34 1 5.7592 -11.6723 -1.1795 35 1 4.2663 -11.1909 -2.0212 36 1 5.7712 -11.4092 1.2934 37 1 2.3116 -10.3456 -0.7136 38 1 2.4124 -10.2257 1.0594 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227523796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:02 Heat of formation + Delta-G solvation = -142.786284 kcal Electronic energy + Delta-G solvation = -18595.097821 eV Core-core repulsion = 15561.354710 eV Total energy + Delta-G solvation = -3033.743111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88395 -39.91933 -36.88160 -35.06464 -34.58463 -32.55545 -31.00845 -30.28128 -27.70821 -26.42807 -23.48718 -22.33710 -21.73570 -20.65920 -19.82206 -17.93402 -17.54632 -17.33206 -16.87869 -16.73351 -16.33832 -15.91292 -15.47343 -15.25923 -14.83737 -14.69002 -14.37363 -13.86048 -13.62830 -13.27410 -13.17238 -13.15665 -12.97563 -12.85806 -12.61535 -12.47251 -11.95652 -11.75614 -11.66414 -11.42452 -11.12907 -11.11451 -10.86863 -10.52633 -10.28623 -10.10647 -8.67347 -8.34479 -6.13089 1.26844 1.44352 1.46907 1.56987 1.60833 2.26755 2.31461 2.99438 3.32140 3.43794 3.64792 3.75166 3.92991 3.99326 4.15060 4.29263 4.30223 4.32515 4.49783 4.50799 4.55662 4.63085 4.70860 4.80923 4.85083 5.06575 5.11567 5.23186 5.27529 5.34048 5.36947 5.41381 5.43813 5.59193 6.19626 6.49922 6.98957 7.06403 7.23717 8.74644 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.003004 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.087217 B = 9319.513474 C = 9635.945091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.124 3.876 15 C -0.080 4.080 16 H 0.079 0.921 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.149 4.149 20 C 0.108 3.892 21 H 0.067 0.933 22 O -0.582 6.582 23 C -0.110 4.110 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.414 0.586 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.390 0.610 37 H 0.087 0.913 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.185 -23.645 -1.959 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.098 4.098 16 H 0.098 0.902 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.187 4.187 20 C 0.049 3.951 21 H 0.085 0.915 22 O -0.390 6.390 23 C -0.148 4.148 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.251 0.749 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.105 0.895 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.612 -23.450 -1.860 26.692 hybrid contribution 2.071 0.936 -0.058 2.274 sum 14.683 -22.514 -1.918 26.948 Atomic orbital electron populations 1.70180 1.08008 1.28707 1.47919 1.26152 0.95984 1.03375 0.93682 0.84986 0.77788 0.75579 0.79523 1.18583 1.20358 1.18655 1.23184 0.95372 0.91994 1.59041 0.89879 1.85574 1.10596 0.99242 1.97059 1.23374 1.03555 0.94362 1.06777 1.20097 0.86248 0.86749 0.75165 1.90685 1.17442 1.86167 1.50348 1.45779 1.10176 1.05224 1.75283 1.21481 0.97053 0.80069 1.01339 1.21181 0.95264 0.93946 0.99457 0.90228 1.21630 0.97497 0.99887 0.96410 1.21412 0.97216 0.94326 1.02040 1.22241 1.00842 0.97473 0.98109 1.21765 0.90073 0.97502 0.85759 0.91493 1.86510 1.40781 1.61970 1.49701 1.21577 0.97074 0.93173 1.02930 0.91962 0.87305 0.87145 0.74892 0.92298 0.92906 0.91893 0.91938 0.91457 0.91705 0.90295 0.90640 0.76030 0.89500 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.67 13.22 21.65 0.29 -56.39 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.55 -31.74 9.50 67.95 0.65 -31.10 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.28 6.16 71.23 0.44 -4.84 16 11 C 0.53 20.47 7.85 87.66 0.69 21.16 16 12 O -0.57 -27.35 15.86 -3.05 -0.05 -27.39 16 13 N -0.71 -19.18 5.28 -463.06 -2.45 -21.62 16 14 C 0.12 2.99 5.06 86.38 0.44 3.43 16 15 C -0.08 -1.37 2.08 -10.79 -0.02 -1.39 16 16 H 0.08 1.51 7.68 -2.39 -0.02 1.50 16 17 C -0.12 -1.74 5.08 30.60 0.16 -1.59 16 18 C -0.11 -1.32 5.78 30.60 0.18 -1.14 16 19 C -0.15 -1.37 5.64 30.59 0.17 -1.20 16 20 C 0.11 1.22 3.77 30.61 0.12 1.33 16 21 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 22 O -0.58 -7.59 11.97 -148.98 -1.78 -9.38 16 23 C -0.11 -1.62 4.95 30.61 0.15 -1.47 16 24 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 26 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 27 H 0.41 8.50 7.66 -92.71 -0.71 7.79 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.06 0.96 7.18 -2.39 -0.02 0.94 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.83 7.68 -2.39 -0.02 0.81 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.39 1.98 9.08 -74.06 -0.67 1.31 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.66 324.10 -0.02 -77.69 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.32 Total: 16.51 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 3.42 Total: -15.61 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -2.16 Total: -78.01 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.83 Total: -36.77 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.66 -0.02 -77.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227523796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.097 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds