Wall clock time and date at job start Mon Mar 30 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99893 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46809 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47187 * 304.99974 * 15 14 13 17 17 C 1.52995 * 109.46777 * 65.00331 * 15 14 13 18 18 C 1.53004 * 109.47117 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.46990 * 300.00049 * 18 17 15 20 20 C 1.52999 * 109.47107 * 59.99681 * 19 18 17 21 21 H 1.09003 * 109.47039 * 60.00473 * 20 19 18 22 22 O 1.42902 * 109.47221 * 180.02562 * 20 19 18 23 23 C 1.52994 * 109.47428 * 300.00090 * 20 19 18 24 24 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 26 26 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 27 27 H 0.97002 * 119.99660 * 359.97438 * 13 11 10 28 28 H 1.08993 * 109.47224 * 299.99451 * 14 13 11 29 29 H 1.09003 * 109.47140 * 60.00368 * 14 13 11 30 30 H 1.08994 * 109.47621 * 299.99377 * 17 15 14 31 31 H 1.08999 * 109.47553 * 59.99867 * 17 15 14 32 32 H 1.08999 * 109.46881 * 59.99622 * 18 17 15 33 33 H 1.08995 * 109.47385 * 180.02562 * 18 17 15 34 34 H 1.08993 * 109.47005 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46785 * 299.99998 * 19 18 17 36 36 H 0.96708 * 113.99751 * 300.00512 * 22 20 19 37 37 H 1.09003 * 109.47324 * 300.00209 * 23 20 19 38 38 H 1.08999 * 109.47833 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 2.3305 -7.7151 -0.0035 15 6 3.5026 -8.6985 -0.0031 16 1 4.1604 -8.4801 -0.8444 17 6 4.2840 -8.5599 1.3049 18 6 5.4558 -9.5438 1.3056 19 6 4.9224 -10.9723 1.1790 20 6 4.1409 -11.1108 -0.1290 21 1 4.7989 -10.8928 -0.9703 22 8 3.6422 -12.4447 -0.2470 23 6 2.9692 -10.1270 -0.1297 24 1 -0.4850 -0.8401 -0.0004 25 1 3.1252 -3.7309 -0.8909 26 1 3.1238 -3.7317 0.8891 27 1 3.8010 -6.1834 -0.0013 28 1 1.7209 -7.8755 0.8857 29 1 1.7229 -7.8748 -0.8943 30 1 4.6637 -7.5423 1.3953 31 1 3.6262 -8.7784 2.1461 32 1 6.1137 -9.3258 0.4643 33 1 6.0123 -9.4455 2.2376 34 1 5.7572 -11.6731 1.1790 35 1 4.2644 -11.1902 2.0202 36 1 4.3313 -13.1232 -0.2531 37 1 2.3112 -10.3449 0.7115 38 1 2.4126 -10.2253 -1.0617 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227523799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:04 Heat of formation + Delta-G solvation = -123.526098 kcal Electronic energy + Delta-G solvation = -18473.850642 eV Core-core repulsion = 15440.942715 eV Total energy + Delta-G solvation = -3032.907927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90870 -38.87835 -36.43368 -34.31598 -32.52667 -31.74964 -30.03248 -29.13704 -25.69104 -24.76156 -22.83473 -21.74434 -20.54676 -20.07248 -18.35739 -17.53488 -16.52095 -16.20506 -15.72425 -15.37769 -14.90725 -14.63331 -14.38882 -14.08972 -13.83337 -13.34574 -13.28710 -12.95555 -12.64230 -12.42485 -12.35374 -11.89397 -11.83640 -11.71278 -11.43428 -11.04996 -10.94780 -10.91911 -10.59175 -10.17508 -10.14257 -9.58230 -9.49868 -9.02749 -8.92907 -8.22164 -6.67018 -6.62183 -3.99990 2.91780 3.01356 3.34498 3.37771 3.51509 3.58217 3.84875 4.21789 4.25358 4.26555 4.58055 4.67068 4.76104 4.88586 4.95784 5.05954 5.07806 5.13243 5.22420 5.24819 5.45637 5.46988 5.56890 5.63660 5.70558 5.74903 5.77385 5.78876 5.82966 5.94085 6.01265 6.08114 6.55594 7.24764 7.63199 7.91575 8.50089 8.52965 9.27182 10.81806 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.048837 B = 0.002900 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.199510 B = 9652.114315 C =10061.930599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.065 0.935 9 S -0.116 6.116 10 C -0.131 4.131 11 C 0.529 3.471 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.127 3.873 15 C -0.095 4.095 16 H 0.079 0.921 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.152 4.152 20 C 0.106 3.894 21 H 0.055 0.945 22 O -0.569 6.569 23 C -0.105 4.105 24 H 0.278 0.722 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.398 0.602 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.377 0.623 37 H 0.074 0.926 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.964 -22.141 1.032 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.176 4.176 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.110 5.890 10 C -0.282 4.282 11 C 0.315 3.685 12 O -0.392 6.392 13 N -0.391 5.391 14 C 0.003 3.997 15 C -0.113 4.113 16 H 0.097 0.903 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.190 4.190 20 C 0.047 3.953 21 H 0.073 0.927 22 O -0.374 6.374 23 C -0.143 4.143 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.232 0.768 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.153 -20.524 1.021 23.381 hybrid contribution 2.872 -1.611 0.043 3.294 sum 14.026 -22.135 1.063 26.226 Atomic orbital electron populations 1.70800 1.06704 1.30988 1.43317 1.26062 0.96334 1.02147 0.93027 0.83328 0.74758 0.74205 0.76695 1.20267 1.21144 1.21137 1.23701 0.96011 0.92214 1.63647 0.91631 1.84832 1.08148 0.98799 1.97221 1.23317 1.05089 0.94613 1.05190 1.20281 0.86584 0.86293 0.75320 1.90706 1.15374 1.85618 1.47546 1.45973 1.09857 1.05522 1.77772 1.21288 0.95482 0.80383 1.02597 1.21332 0.96953 0.94144 0.98921 0.90256 1.21670 0.97102 0.99574 0.97372 1.21480 0.97760 0.93984 1.02236 1.22287 1.00048 0.97611 0.99054 1.21785 0.94993 0.82549 0.95938 0.92721 1.86531 1.38072 1.16012 1.96790 1.21419 0.97257 0.91986 1.03685 0.90970 0.88994 0.88991 0.76825 0.91425 0.91435 0.91327 0.91326 0.91771 0.91478 0.91872 0.91016 0.77633 0.90716 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.69 13.67 55.49 0.76 -26.93 16 2 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 3 Si 1.08 24.98 29.92 -169.99 -5.09 19.89 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.61 -17.61 9.50 30.94 0.29 -17.31 16 8 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 9 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 10 C -0.13 -2.65 6.16 36.01 0.22 -2.43 16 11 C 0.53 9.88 7.85 -10.98 -0.09 9.79 16 12 O -0.52 -11.86 15.86 5.55 0.09 -11.77 16 13 N -0.74 -9.62 5.28 -60.29 -0.32 -9.93 16 14 C 0.13 1.45 5.06 -4.04 -0.02 1.43 16 15 C -0.09 -0.77 2.23 -90.62 -0.20 -0.97 16 16 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.12 -0.89 5.08 -26.73 -0.14 -1.03 16 18 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 19 C -0.15 -0.94 5.55 -26.73 -0.15 -1.08 16 20 C 0.11 0.76 3.47 -26.73 -0.09 0.67 16 21 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 22 O -0.57 -4.53 13.32 -35.23 -0.47 -4.99 16 23 C -0.11 -0.88 4.85 -26.73 -0.13 -1.01 16 24 H 0.28 8.89 7.12 -40.82 -0.29 8.60 16 25 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 26 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 27 H 0.40 4.00 7.65 -40.82 -0.31 3.69 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.51 7.18 -51.93 -0.37 0.14 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.38 1.39 9.08 45.56 0.41 1.81 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -35.84 324.81 -8.06 -43.90 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.26 Total: 2.10 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.55 Total: -11.89 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.44 Total: -36.86 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.38 Total: -16.76 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.09 Total: 19.89 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.84 -8.06 -43.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227523799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.630 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds