Wall clock time and date at job start Mon Mar 30 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99893 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46809 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47187 * 304.99974 * 15 14 13 17 17 C 1.52995 * 109.46777 * 65.00331 * 15 14 13 18 18 C 1.53004 * 109.47117 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.46990 * 300.00049 * 18 17 15 20 20 C 1.52999 * 109.47107 * 59.99681 * 19 18 17 21 21 H 1.09003 * 109.47039 * 60.00473 * 20 19 18 22 22 O 1.42902 * 109.47221 * 180.02562 * 20 19 18 23 23 C 1.52994 * 109.47428 * 300.00090 * 20 19 18 24 24 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 26 26 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 27 27 H 0.97002 * 119.99660 * 359.97438 * 13 11 10 28 28 H 1.08993 * 109.47224 * 299.99451 * 14 13 11 29 29 H 1.09003 * 109.47140 * 60.00368 * 14 13 11 30 30 H 1.08994 * 109.47621 * 299.99377 * 17 15 14 31 31 H 1.08999 * 109.47553 * 59.99867 * 17 15 14 32 32 H 1.08999 * 109.46881 * 59.99622 * 18 17 15 33 33 H 1.08995 * 109.47385 * 180.02562 * 18 17 15 34 34 H 1.08993 * 109.47005 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46785 * 299.99998 * 19 18 17 36 36 H 0.96708 * 113.99751 * 300.00512 * 22 20 19 37 37 H 1.09003 * 109.47324 * 300.00209 * 23 20 19 38 38 H 1.08999 * 109.47833 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 2.3305 -7.7151 -0.0035 15 6 3.5026 -8.6985 -0.0031 16 1 4.1604 -8.4801 -0.8444 17 6 4.2840 -8.5599 1.3049 18 6 5.4558 -9.5438 1.3056 19 6 4.9224 -10.9723 1.1790 20 6 4.1409 -11.1108 -0.1290 21 1 4.7989 -10.8928 -0.9703 22 8 3.6422 -12.4447 -0.2470 23 6 2.9692 -10.1270 -0.1297 24 1 -0.4850 -0.8401 -0.0004 25 1 3.1252 -3.7309 -0.8909 26 1 3.1238 -3.7317 0.8891 27 1 3.8010 -6.1834 -0.0013 28 1 1.7209 -7.8755 0.8857 29 1 1.7229 -7.8748 -0.8943 30 1 4.6637 -7.5423 1.3953 31 1 3.6262 -8.7784 2.1461 32 1 6.1137 -9.3258 0.4643 33 1 6.0123 -9.4455 2.2376 34 1 5.7572 -11.6731 1.1790 35 1 4.2644 -11.1902 2.0202 36 1 4.3313 -13.1232 -0.2531 37 1 2.3112 -10.3449 0.7115 38 1 2.4126 -10.2253 -1.0617 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227523799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:04 Heat of formation + Delta-G solvation = -150.800224 kcal Electronic energy + Delta-G solvation = -18475.033337 eV Core-core repulsion = 15440.942715 eV Total energy + Delta-G solvation = -3034.090622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95372 -39.90548 -37.20195 -35.36374 -34.74499 -32.66909 -31.01714 -30.18551 -27.18880 -26.44232 -23.43135 -22.46814 -21.80991 -20.83588 -20.39283 -18.32476 -17.75289 -17.54403 -16.79101 -16.44652 -16.15980 -15.70203 -15.50972 -15.39039 -14.97116 -14.71639 -14.48831 -14.18910 -13.91079 -13.70695 -13.48114 -13.20604 -12.95933 -12.72815 -12.36243 -12.02943 -11.95053 -11.66970 -11.57227 -11.53252 -11.21771 -11.09417 -11.04086 -10.68313 -10.32583 -10.19023 -8.92517 -8.87508 -6.27868 1.19856 1.50904 1.52588 1.61280 1.81415 2.16950 2.35501 3.02463 3.12921 3.24040 3.57494 3.66339 3.86556 4.01405 4.07797 4.17083 4.20595 4.24956 4.37550 4.42381 4.44310 4.55382 4.62150 4.68211 4.79572 5.04745 5.11207 5.15948 5.18206 5.23943 5.29093 5.36929 5.50062 5.64285 6.14734 6.42332 6.90308 7.06459 7.15325 8.51005 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.048837 B = 0.002900 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.199510 B = 9652.114315 C =10061.930599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.021 4.021 3 Si 1.137 2.863 4 H -0.281 1.281 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.613 4.613 8 H 0.076 0.924 9 S -0.199 6.199 10 C -0.109 4.109 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.707 5.707 14 C 0.126 3.874 15 C -0.079 4.079 16 H 0.096 0.904 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.148 4.148 20 C 0.107 3.893 21 H 0.068 0.932 22 O -0.590 6.590 23 C -0.108 4.108 24 H 0.260 0.740 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.417 0.583 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.395 0.605 37 H 0.061 0.939 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.364 -22.729 0.927 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.224 4.224 3 Si 0.955 3.045 4 H -0.206 1.206 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.760 4.760 8 H 0.095 0.905 9 S 0.027 5.973 10 C -0.260 4.260 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.002 3.998 15 C -0.098 4.098 16 H 0.115 0.885 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.186 4.186 20 C 0.049 3.951 21 H 0.086 0.914 22 O -0.398 6.398 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.255 0.745 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.244 0.756 37 H 0.080 0.920 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.625 -21.181 0.918 25.756 hybrid contribution 1.851 -1.609 0.076 2.453 sum 16.476 -22.790 0.994 28.139 Atomic orbital electron populations 1.70920 1.08061 1.30011 1.45946 1.27868 0.96317 1.06467 0.91700 0.82712 0.73922 0.69412 0.78481 1.20626 1.18724 1.18715 1.24033 0.96544 0.92713 1.62745 0.90532 1.85102 1.13375 1.01291 1.97489 1.23226 1.02100 0.93521 1.07186 1.20055 0.86283 0.86714 0.75298 1.90698 1.17526 1.86130 1.50325 1.45699 1.10261 1.04976 1.75183 1.21410 0.96931 0.79915 1.01547 1.21216 0.95617 0.92832 1.00152 0.88542 1.21683 0.97433 1.00378 0.96306 1.21462 0.97163 0.93270 1.03153 1.22249 1.00233 0.98199 0.97906 1.21774 0.94344 0.81999 0.96992 0.91445 1.86485 1.39676 1.16818 1.96868 1.21414 0.97836 0.92625 1.02704 0.92880 0.86863 0.86858 0.74528 0.92689 0.92465 0.90893 0.92454 0.90512 0.90822 0.90104 0.92268 0.75562 0.92040 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.47 13.67 21.65 0.30 -58.18 16 2 C -0.02 -1.20 5.49 84.86 0.47 -0.73 16 3 Si 1.14 49.14 29.92 68.60 2.05 51.19 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.61 -35.34 9.50 67.95 0.65 -34.69 16 8 H 0.08 4.11 7.80 -2.92 -0.02 4.08 16 9 S -0.20 -11.03 19.60 -56.49 -1.11 -12.14 16 10 C -0.11 -4.27 6.16 71.24 0.44 -3.83 16 11 C 0.53 19.42 7.85 87.66 0.69 20.11 16 12 O -0.57 -26.53 15.86 -3.04 -0.05 -26.58 16 13 N -0.71 -17.16 5.28 -463.05 -2.45 -19.60 16 14 C 0.13 2.77 5.06 86.38 0.44 3.21 16 15 C -0.08 -1.13 2.23 -10.79 -0.02 -1.15 16 16 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 17 C -0.12 -1.51 5.08 30.59 0.16 -1.36 16 18 C -0.11 -1.04 5.92 30.60 0.18 -0.86 16 19 C -0.15 -1.45 5.55 30.60 0.17 -1.28 16 20 C 0.11 1.31 3.47 30.59 0.11 1.42 16 21 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 22 O -0.59 -8.44 13.32 -148.98 -1.98 -10.42 16 23 C -0.11 -1.68 4.85 30.59 0.15 -1.53 16 24 H 0.26 17.33 7.12 -92.71 -0.66 16.67 16 25 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 26 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 27 H 0.42 7.02 7.65 -92.71 -0.71 6.31 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 0.86 7.18 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.39 2.12 9.08 -74.05 -0.67 1.45 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -79.89 324.81 -0.04 -79.93 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.21 Total: 16.49 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 3.41 Total: -20.68 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.15 Total: -77.78 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -2.03 Total: -37.00 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.19 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.11 Total: -12.14 kcal Total: -79.89 -0.04 -79.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227523799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.873 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds