Wall clock time and date at job start Mon Mar 30 2020 01:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00118 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99838 * 3 2 1 7 7 C 1.38805 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99574 * 179.72338 * 7 2 1 9 9 S 1.76194 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00259 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00124 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99738 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99961 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47328 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.46922 * 304.99802 * 15 14 13 17 17 C 1.52998 * 109.47193 * 64.99705 * 15 14 13 18 18 C 1.52995 * 109.47251 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47052 * 300.00152 * 18 17 15 20 20 C 1.53006 * 109.47137 * 60.00011 * 19 18 17 21 21 H 1.09002 * 109.47150 * 179.97438 * 20 19 18 22 22 O 1.42899 * 109.47061 * 59.99788 * 20 19 18 23 23 C 1.52995 * 109.46800 * 299.99769 * 20 19 18 24 24 H 0.97000 * 119.99481 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46943 * 299.99628 * 10 9 7 26 26 H 1.08994 * 109.47373 * 59.99203 * 10 9 7 27 27 H 0.97003 * 120.00355 * 0.02562 * 13 11 10 28 28 H 1.09005 * 109.47007 * 300.00133 * 14 13 11 29 29 H 1.09002 * 109.47242 * 60.00033 * 14 13 11 30 30 H 1.09002 * 109.47230 * 300.00337 * 17 15 14 31 31 H 1.09002 * 109.47107 * 60.00210 * 17 15 14 32 32 H 1.09002 * 109.46997 * 60.00016 * 18 17 15 33 33 H 1.08996 * 109.47207 * 180.02562 * 18 17 15 34 34 H 1.09004 * 109.46857 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47681 * 299.99716 * 19 18 17 36 36 H 0.96704 * 113.99852 * 60.00061 * 22 20 19 37 37 H 1.08995 * 109.47449 * 299.99805 * 23 20 19 38 38 H 1.09004 * 109.46712 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 -0.0040 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0008 14 6 2.3301 -7.7151 0.0019 15 6 3.5021 -8.6987 0.0018 16 1 4.1588 -8.4812 -0.8406 17 6 4.2855 -8.5587 1.3085 18 6 5.4579 -9.5417 1.3081 19 6 4.9252 -10.9706 1.1834 20 6 4.1418 -11.1106 -0.1234 21 1 3.7627 -12.1287 -0.2125 22 8 5.0026 -10.8249 -1.2277 23 6 2.9695 -10.1275 -0.1229 24 1 -0.4849 0.8401 0.0004 25 1 3.1243 -3.7315 -0.8895 26 1 3.1244 -3.7314 0.8904 27 1 3.8007 -6.1836 0.0004 28 1 1.7224 -7.8747 0.8927 29 1 1.7205 -7.8756 -0.8873 30 1 4.6654 -7.5408 1.3972 31 1 3.6289 -8.7761 2.1509 32 1 6.1144 -9.3239 0.4658 33 1 6.0157 -9.4423 2.2392 34 1 5.7605 -11.6709 1.1827 35 1 4.2687 -11.1885 2.0257 36 1 5.7694 -11.4108 -1.2905 37 1 2.3129 -10.3454 0.7194 38 1 2.4116 -10.2270 -1.0541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227523808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:07 Heat of formation + Delta-G solvation = -116.350838 kcal Electronic energy + Delta-G solvation = -18594.112393 eV Core-core repulsion = 15561.515609 eV Total energy + Delta-G solvation = -3032.596784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87482 -38.79358 -36.02665 -34.03605 -32.40266 -31.60917 -30.17159 -29.03730 -25.69774 -25.24543 -22.86245 -21.57631 -20.38403 -19.90438 -17.83484 -17.12693 -16.37773 -16.06419 -15.71061 -15.19102 -14.88024 -14.77990 -14.44896 -14.05692 -13.78340 -13.20140 -12.90056 -12.78305 -12.65813 -12.51497 -12.27778 -11.90663 -11.68385 -11.30184 -11.05387 -11.01789 -11.01493 -10.76438 -10.71651 -10.37722 -10.00518 -9.79116 -9.32759 -9.03658 -8.78552 -8.20327 -6.46709 -6.18844 -3.89145 3.09453 3.17415 3.25491 3.29597 3.34570 3.78698 3.90844 4.23314 4.33473 4.37346 4.54289 4.78638 4.92142 4.95895 5.11855 5.14803 5.16073 5.24545 5.26267 5.42494 5.57096 5.58391 5.63843 5.70167 5.79630 5.85034 5.92100 5.93341 5.98035 6.06655 6.18454 6.26159 6.71532 7.31800 7.61901 7.79477 8.37761 8.69134 9.26217 10.88584 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.003004 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.083047 B = 9319.131953 C = 9635.953943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.737 5.737 14 C 0.125 3.875 15 C -0.094 4.094 16 H 0.086 0.914 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.153 4.153 20 C 0.106 3.894 21 H 0.054 0.946 22 O -0.562 6.562 23 C -0.105 4.105 24 H 0.269 0.731 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.397 0.603 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.374 0.626 37 H 0.078 0.922 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.509 -22.904 1.622 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.392 5.392 14 C 0.001 3.999 15 C -0.112 4.112 16 H 0.104 0.896 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.191 4.191 20 C 0.047 3.953 21 H 0.072 0.928 22 O -0.367 6.367 23 C -0.143 4.143 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.231 0.769 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.097 0.903 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.869 -22.661 1.522 24.764 hybrid contribution 2.862 0.846 0.177 2.989 sum 12.731 -21.815 1.699 25.315 Atomic orbital electron populations 1.70012 1.05954 1.27527 1.46840 1.24994 0.95029 0.99013 0.94562 0.86222 0.79226 0.81241 0.78787 1.19950 1.20827 1.19945 1.22839 0.94886 0.91718 1.58979 0.90993 1.85384 1.05030 0.96268 1.96712 1.23531 1.06493 0.95517 1.04864 1.20295 0.86546 0.86304 0.75214 1.90695 1.15401 1.85658 1.47657 1.46008 1.09856 1.05557 1.77737 1.21333 0.95733 0.80715 1.02156 1.21302 0.96750 0.94115 0.99063 0.89610 1.21617 0.97038 0.99463 0.97251 1.21436 0.97942 0.94026 1.01847 1.22263 1.00320 0.97906 0.98568 1.21765 0.90573 0.97499 0.85447 0.92826 1.86555 1.39902 1.61040 1.49253 1.21515 0.96164 0.93651 1.02985 0.92151 0.89269 0.89295 0.76890 0.91789 0.91701 0.91632 0.91810 0.91324 0.92147 0.91958 0.91022 0.77926 0.90316 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.50 9.50 30.94 0.29 -15.20 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 11 C 0.53 10.28 7.85 -10.99 -0.09 10.19 16 12 O -0.52 -12.22 15.86 5.56 0.09 -12.13 16 13 N -0.74 -10.36 5.28 -60.29 -0.32 -10.68 16 14 C 0.12 1.54 5.07 -4.04 -0.02 1.52 16 15 C -0.09 -0.87 2.08 -90.62 -0.19 -1.06 16 16 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 17 C -0.12 -0.98 5.08 -26.74 -0.14 -1.11 16 18 C -0.12 -0.82 5.78 -26.73 -0.15 -0.97 16 19 C -0.15 -0.92 5.64 -26.73 -0.15 -1.07 16 20 C 0.11 0.72 3.77 -26.73 -0.10 0.62 16 21 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 22 O -0.56 -4.26 11.97 -35.23 -0.42 -4.69 16 23 C -0.11 -0.85 4.95 -26.73 -0.13 -0.98 16 24 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 26 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 27 H 0.40 4.50 7.65 -40.82 -0.31 4.18 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.37 1.39 9.08 45.56 0.41 1.80 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -35.19 324.09 -8.08 -43.27 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.26 Total: 1.38 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.55 Total: -9.00 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.42 Total: -36.43 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.33 Total: -16.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.19 -8.08 -43.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227523808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.077 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds