Wall clock time and date at job start Mon Mar 30 2020 01:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00118 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99838 * 3 2 1 7 7 C 1.38805 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99574 * 179.72338 * 7 2 1 9 9 S 1.76194 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00259 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00124 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99738 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99961 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47328 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.46922 * 304.99802 * 15 14 13 17 17 C 1.52998 * 109.47193 * 64.99705 * 15 14 13 18 18 C 1.52995 * 109.47251 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47052 * 300.00152 * 18 17 15 20 20 C 1.53006 * 109.47137 * 60.00011 * 19 18 17 21 21 H 1.09002 * 109.47150 * 179.97438 * 20 19 18 22 22 O 1.42899 * 109.47061 * 59.99788 * 20 19 18 23 23 C 1.52995 * 109.46800 * 299.99769 * 20 19 18 24 24 H 0.97000 * 119.99481 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46943 * 299.99628 * 10 9 7 26 26 H 1.08994 * 109.47373 * 59.99203 * 10 9 7 27 27 H 0.97003 * 120.00355 * 0.02562 * 13 11 10 28 28 H 1.09005 * 109.47007 * 300.00133 * 14 13 11 29 29 H 1.09002 * 109.47242 * 60.00033 * 14 13 11 30 30 H 1.09002 * 109.47230 * 300.00337 * 17 15 14 31 31 H 1.09002 * 109.47107 * 60.00210 * 17 15 14 32 32 H 1.09002 * 109.46997 * 60.00016 * 18 17 15 33 33 H 1.08996 * 109.47207 * 180.02562 * 18 17 15 34 34 H 1.09004 * 109.46857 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47681 * 299.99716 * 19 18 17 36 36 H 0.96704 * 113.99852 * 60.00061 * 22 20 19 37 37 H 1.08995 * 109.47449 * 299.99805 * 23 20 19 38 38 H 1.09004 * 109.46712 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 -0.0040 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0008 14 6 2.3301 -7.7151 0.0019 15 6 3.5021 -8.6987 0.0018 16 1 4.1588 -8.4812 -0.8406 17 6 4.2855 -8.5587 1.3085 18 6 5.4579 -9.5417 1.3081 19 6 4.9252 -10.9706 1.1834 20 6 4.1418 -11.1106 -0.1234 21 1 3.7627 -12.1287 -0.2125 22 8 5.0026 -10.8249 -1.2277 23 6 2.9695 -10.1275 -0.1229 24 1 -0.4849 0.8401 0.0004 25 1 3.1243 -3.7315 -0.8895 26 1 3.1244 -3.7314 0.8904 27 1 3.8007 -6.1836 0.0004 28 1 1.7224 -7.8747 0.8927 29 1 1.7205 -7.8756 -0.8873 30 1 4.6654 -7.5408 1.3972 31 1 3.6289 -8.7761 2.1509 32 1 6.1144 -9.3239 0.4658 33 1 6.0157 -9.4423 2.2392 34 1 5.7605 -11.6709 1.1827 35 1 4.2687 -11.1885 2.0257 36 1 5.7694 -11.4108 -1.2905 37 1 2.3129 -10.3454 0.7194 38 1 2.4116 -10.2270 -1.0541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227523808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:07 Heat of formation + Delta-G solvation = -142.794153 kcal Electronic energy + Delta-G solvation = -18595.259061 eV Core-core repulsion = 15561.515609 eV Total energy + Delta-G solvation = -3033.743452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88484 -39.92131 -36.88182 -35.06497 -34.58479 -32.55523 -31.01043 -30.28193 -27.70797 -26.42878 -23.48630 -22.33813 -21.73591 -20.65847 -19.82222 -17.93449 -17.54677 -17.33211 -16.87866 -16.73374 -16.33868 -15.91325 -15.47289 -15.25933 -14.83770 -14.69043 -14.37377 -13.86074 -13.62885 -13.27450 -13.17224 -13.15670 -12.97562 -12.85799 -12.61552 -12.47307 -11.95583 -11.75646 -11.66411 -11.42436 -11.12910 -11.11491 -10.86932 -10.52597 -10.28613 -10.10660 -8.67363 -8.34509 -6.13072 1.26843 1.44339 1.46927 1.56984 1.60868 2.26750 2.31439 2.99426 3.32145 3.43914 3.64789 3.75109 3.92961 3.99315 4.15074 4.29282 4.30231 4.32523 4.49821 4.50841 4.55657 4.63108 4.70851 4.80898 4.85081 5.06581 5.11555 5.23199 5.27501 5.34042 5.36938 5.41394 5.43780 5.59177 6.19614 6.49945 6.98930 7.06388 7.23718 8.74621 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.003004 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.083047 B = 9319.131953 C = 9635.953943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.124 3.876 15 C -0.080 4.080 16 H 0.079 0.921 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.149 4.149 20 C 0.108 3.892 21 H 0.067 0.933 22 O -0.582 6.582 23 C -0.110 4.110 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.414 0.586 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.390 0.610 37 H 0.086 0.914 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.186 -23.644 1.966 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.099 4.099 16 H 0.098 0.902 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.187 4.187 20 C 0.049 3.951 21 H 0.085 0.915 22 O -0.390 6.390 23 C -0.148 4.148 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.251 0.749 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.105 0.895 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.613 -23.449 1.865 26.691 hybrid contribution 2.072 0.936 0.056 2.274 sum 14.685 -22.513 1.921 26.947 Atomic orbital electron populations 1.70181 1.08010 1.28704 1.47914 1.26153 0.95985 1.03374 0.93681 0.84986 0.77788 0.75578 0.79523 1.18661 1.20358 1.18578 1.23185 0.95372 0.91996 1.59047 0.89883 1.85571 1.10597 0.99241 1.97059 1.23373 1.03555 0.94366 1.06777 1.20095 0.86247 0.86747 0.75166 1.90684 1.17441 1.86165 1.50347 1.45781 1.10176 1.05225 1.75283 1.21481 0.97049 0.80068 1.01341 1.21181 0.95260 0.93944 0.99465 0.90232 1.21628 0.97490 0.99886 0.96421 1.21410 0.97214 0.94324 1.02044 1.22243 1.00834 0.97471 0.98118 1.21755 0.90092 0.97511 0.85739 0.91490 1.86511 1.40853 1.62012 1.49584 1.21569 0.97085 0.93171 1.02930 0.91963 0.87302 0.87152 0.74891 0.92307 0.92894 0.91939 0.91894 0.91705 0.91456 0.90294 0.90641 0.76031 0.89503 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.75 9.50 67.96 0.65 -31.10 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 11 C 0.53 20.48 7.85 87.66 0.69 21.16 16 12 O -0.57 -27.34 15.86 -3.03 -0.05 -27.39 16 13 N -0.71 -19.18 5.28 -463.05 -2.45 -21.63 16 14 C 0.12 2.99 5.07 86.38 0.44 3.43 16 15 C -0.08 -1.37 2.08 -10.79 -0.02 -1.40 16 16 H 0.08 1.51 7.68 -2.39 -0.02 1.49 16 17 C -0.12 -1.74 5.08 30.59 0.16 -1.59 16 18 C -0.11 -1.32 5.78 30.59 0.18 -1.14 16 19 C -0.15 -1.37 5.64 30.60 0.17 -1.20 16 20 C 0.11 1.22 3.77 30.59 0.12 1.33 16 21 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 22 O -0.58 -7.59 11.97 -148.98 -1.78 -9.38 16 23 C -0.11 -1.62 4.95 30.59 0.15 -1.47 16 24 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 26 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 27 H 0.41 8.50 7.65 -92.71 -0.71 7.79 16 28 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 0.96 7.18 -2.39 -0.02 0.94 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.83 7.68 -2.39 -0.02 0.81 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.39 1.98 9.08 -74.05 -0.67 1.31 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -77.66 324.09 -0.02 -77.69 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.32 Total: 16.51 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 3.42 Total: -15.61 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -2.16 Total: -78.01 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.83 Total: -36.77 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.66 -0.02 -77.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227523808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.106 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds