Wall clock time and date at job start Mon Mar 30 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86795 * 119.99808 * 2 1 4 4 H 1.48501 * 109.47112 * 239.99739 * 3 2 1 5 5 H 1.48507 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47407 * 119.99521 * 3 2 1 7 7 C 1.38793 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00295 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47462 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99909 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99775 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47565 * 34.99894 * 14 13 11 16 16 C 1.53002 * 109.47037 * 274.99325 * 14 13 11 17 17 C 1.52996 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47131 * 60.00459 * 17 16 14 19 19 C 1.52999 * 109.46991 * 299.99311 * 18 17 16 20 20 C 1.52997 * 109.46953 * 154.99854 * 14 13 11 21 21 H 1.09001 * 109.47502 * 60.00124 * 20 14 13 22 22 C 1.52999 * 109.47317 * 299.99478 * 20 14 13 23 23 O 1.42900 * 109.47586 * 174.99976 * 22 20 14 24 24 H 0.96996 * 120.00419 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47102 * 59.99623 * 10 9 7 26 26 H 1.09005 * 109.46523 * 300.00234 * 10 9 7 27 27 H 0.97001 * 119.99650 * 359.97438 * 13 11 10 28 28 H 1.08996 * 109.47407 * 300.00665 * 16 14 13 29 29 H 1.09000 * 109.46986 * 60.00436 * 16 14 13 30 30 H 1.09001 * 109.46993 * 180.02562 * 17 16 14 31 31 H 1.09000 * 109.47380 * 299.99696 * 17 16 14 32 32 H 1.09002 * 109.47153 * 179.97438 * 18 17 16 33 33 H 1.08993 * 109.47194 * 60.00154 * 18 17 16 34 34 H 1.08993 * 109.47839 * 300.00447 * 19 18 17 35 35 H 1.09000 * 109.47160 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47317 * 295.00638 * 22 20 14 37 37 H 1.09007 * 109.46669 * 55.00297 * 22 20 14 38 38 H 0.96694 * 114.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3306 -7.7150 0.0003 15 1 1.4151 -7.7602 -0.5895 16 6 2.0336 -8.1485 1.4373 17 6 1.4977 -9.5815 1.4372 18 6 2.5438 -10.5172 0.8283 19 6 2.8407 -10.0839 -0.6087 20 6 3.3763 -8.6511 -0.6089 21 1 4.2919 -8.6061 -0.0192 22 6 3.6733 -8.2178 -2.0459 23 8 4.7322 -9.0179 -2.5756 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7313 0.8904 26 1 3.1245 -3.7312 -0.8895 27 1 3.8011 -6.1834 0.0006 28 1 2.9492 -8.1033 2.0270 29 1 1.2887 -7.4816 1.8713 30 1 1.2857 -9.8901 2.4609 31 1 0.5822 -9.6270 0.8475 32 1 2.1622 -11.5382 0.8287 33 1 3.4593 -10.4717 1.4181 34 1 1.9253 -10.1294 -1.1986 35 1 3.5857 -10.7508 -1.0428 36 1 2.7797 -8.3473 -2.6565 37 1 3.9708 -7.1692 -2.0550 38 1 4.9743 -8.7976 -3.4854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230178025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:44 Heat of formation + Delta-G solvation = -115.579174 kcal Electronic energy + Delta-G solvation = -19002.809595 eV Core-core repulsion = 15970.246273 eV Total energy + Delta-G solvation = -3032.563322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07256 -38.20768 -36.52364 -34.03005 -32.43411 -31.59848 -30.41002 -28.27804 -25.64615 -25.42439 -22.73359 -21.38713 -20.41192 -19.90960 -17.94946 -17.48167 -16.32515 -16.20404 -15.24943 -15.05162 -14.89632 -14.80810 -14.20618 -14.06187 -13.89704 -13.36460 -13.05930 -12.83024 -12.61105 -12.46895 -12.04765 -11.79151 -11.37111 -11.23383 -11.05134 -11.04413 -10.84419 -10.75584 -10.56863 -10.37865 -10.13162 -9.82463 -9.35814 -9.06804 -8.84884 -8.24725 -6.50663 -6.22130 -3.92887 3.02500 3.09068 3.22982 3.27087 3.30715 3.70309 3.89564 4.20092 4.49168 4.60334 4.71617 4.94185 5.08481 5.11590 5.12942 5.13824 5.25180 5.28927 5.36572 5.43550 5.49303 5.63830 5.68659 5.83734 5.87620 5.93167 5.98099 5.99293 6.03608 6.13263 6.23136 6.29661 6.67346 7.38119 7.58568 7.71654 8.34354 8.61748 9.23038 10.85239 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032152 B = 0.003683 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.647262 B = 7600.363864 C = 8146.292699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.154 3.846 15 H 0.089 0.911 16 C -0.129 4.129 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.107 4.107 20 C -0.091 4.091 21 H 0.081 0.919 22 C 0.078 3.922 23 O -0.574 6.574 24 H 0.269 0.731 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.397 0.603 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.855 -19.256 -1.389 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.391 5.391 14 C 0.049 3.951 15 H 0.107 0.893 16 C -0.167 4.167 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.110 4.110 21 H 0.100 0.900 22 C 0.000 4.000 23 O -0.380 6.380 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.231 0.769 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.632 -19.733 -0.796 20.833 hybrid contribution 2.477 1.724 -0.537 3.066 sum 9.109 -18.009 -1.333 20.225 Atomic orbital electron populations 1.70009 1.05950 1.27574 1.46775 1.24985 0.95022 0.99009 0.94509 0.86227 0.79238 0.81242 0.78802 1.19948 1.20803 1.19930 1.22834 0.94878 0.91712 1.59088 0.91000 1.85386 1.04912 0.96274 1.96721 1.23540 1.06566 0.95503 1.04865 1.20309 0.86580 0.86259 0.74981 1.90699 1.15320 1.85566 1.47448 1.46149 1.09850 1.05351 1.77709 1.20854 0.97164 0.80371 0.96696 0.89303 1.21915 1.01774 0.96678 0.96378 1.21513 0.98651 0.94373 1.01050 1.21578 0.99263 0.98918 0.96087 1.21474 1.01167 0.94888 0.96936 1.21381 0.98971 0.95692 0.94990 0.90042 1.22238 0.89573 0.93870 0.94330 1.86430 1.55536 1.62442 1.33585 0.92123 0.89246 0.89344 0.76923 0.91841 0.90811 0.91760 0.91662 0.91903 0.91972 0.91866 0.90907 0.93446 0.93130 0.77431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 11 C 0.53 9.76 7.81 -10.99 -0.09 9.67 16 12 O -0.52 -11.51 15.53 5.56 0.09 -11.42 16 13 N -0.74 -9.72 4.30 -53.81 -0.23 -9.95 16 14 C 0.15 1.84 1.90 -67.93 -0.13 1.71 16 15 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 16 C -0.13 -1.48 5.49 -26.73 -0.15 -1.62 16 17 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 18 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 19 C -0.11 -0.96 5.10 -26.75 -0.14 -1.09 16 20 C -0.09 -0.89 2.00 -90.64 -0.18 -1.07 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 C 0.08 0.74 6.34 37.16 0.24 0.98 16 23 O -0.57 -5.26 13.19 -35.23 -0.46 -5.72 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 26 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 27 H 0.40 4.21 8.40 -40.82 -0.34 3.87 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.66 7.82 -51.93 -0.41 0.26 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.49 7.30 -51.93 -0.38 0.11 16 38 H 0.38 1.96 9.12 45.56 0.42 2.37 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -34.09 325.23 -7.85 -41.95 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.30 Total: 2.85 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.34 Total: -9.69 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.50 Total: -35.37 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.38 Total: -17.15 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.09 -7.85 -41.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230178025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.634 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds