Wall clock time and date at job start Mon Mar 30 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86795 * 119.99808 * 2 1 4 4 H 1.48501 * 109.47112 * 239.99739 * 3 2 1 5 5 H 1.48507 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47407 * 119.99521 * 3 2 1 7 7 C 1.38793 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00295 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47462 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99909 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99775 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47565 * 34.99894 * 14 13 11 16 16 C 1.53002 * 109.47037 * 274.99325 * 14 13 11 17 17 C 1.52996 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47131 * 60.00459 * 17 16 14 19 19 C 1.52999 * 109.46991 * 299.99311 * 18 17 16 20 20 C 1.52997 * 109.46953 * 154.99854 * 14 13 11 21 21 H 1.09001 * 109.47502 * 60.00124 * 20 14 13 22 22 C 1.52999 * 109.47317 * 299.99478 * 20 14 13 23 23 O 1.42900 * 109.47586 * 174.99976 * 22 20 14 24 24 H 0.96996 * 120.00419 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47102 * 59.99623 * 10 9 7 26 26 H 1.09005 * 109.46523 * 300.00234 * 10 9 7 27 27 H 0.97001 * 119.99650 * 359.97438 * 13 11 10 28 28 H 1.08996 * 109.47407 * 300.00665 * 16 14 13 29 29 H 1.09000 * 109.46986 * 60.00436 * 16 14 13 30 30 H 1.09001 * 109.46993 * 180.02562 * 17 16 14 31 31 H 1.09000 * 109.47380 * 299.99696 * 17 16 14 32 32 H 1.09002 * 109.47153 * 179.97438 * 18 17 16 33 33 H 1.08993 * 109.47194 * 60.00154 * 18 17 16 34 34 H 1.08993 * 109.47839 * 300.00447 * 19 18 17 35 35 H 1.09000 * 109.47160 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47317 * 295.00638 * 22 20 14 37 37 H 1.09007 * 109.46669 * 55.00297 * 22 20 14 38 38 H 0.96694 * 114.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3306 -7.7150 0.0003 15 1 1.4151 -7.7602 -0.5895 16 6 2.0336 -8.1485 1.4373 17 6 1.4977 -9.5815 1.4372 18 6 2.5438 -10.5172 0.8283 19 6 2.8407 -10.0839 -0.6087 20 6 3.3763 -8.6511 -0.6089 21 1 4.2919 -8.6061 -0.0192 22 6 3.6733 -8.2178 -2.0459 23 8 4.7322 -9.0179 -2.5756 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7313 0.8904 26 1 3.1245 -3.7312 -0.8895 27 1 3.8011 -6.1834 0.0006 28 1 2.9492 -8.1033 2.0270 29 1 1.2887 -7.4816 1.8713 30 1 1.2857 -9.8901 2.4609 31 1 0.5822 -9.6270 0.8475 32 1 2.1622 -11.5382 0.8287 33 1 3.4593 -10.4717 1.4181 34 1 1.9253 -10.1294 -1.1986 35 1 3.5857 -10.7508 -1.0428 36 1 2.7797 -8.3473 -2.6565 37 1 3.9708 -7.1692 -2.0550 38 1 4.9743 -8.7976 -3.4854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230178025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:44 Heat of formation + Delta-G solvation = -140.918952 kcal Electronic energy + Delta-G solvation = -19003.908410 eV Core-core repulsion = 15970.246273 eV Total energy + Delta-G solvation = -3033.662138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21805 -39.38465 -37.27053 -35.23004 -34.58527 -32.42855 -31.68079 -29.53454 -27.66036 -26.38720 -23.71119 -22.19401 -21.65293 -20.91446 -19.78709 -18.41205 -17.75744 -17.33306 -16.87979 -16.43142 -16.09237 -16.00612 -15.65326 -15.05885 -14.81719 -14.69234 -14.56365 -13.95444 -13.75236 -13.56965 -13.24648 -13.17224 -12.87011 -12.68432 -12.61620 -12.26101 -12.03484 -11.76816 -11.56851 -11.39107 -11.24674 -11.13040 -10.95298 -10.76613 -10.28332 -10.05730 -8.67015 -8.34774 -6.13094 1.26517 1.43766 1.46569 1.56322 1.60978 2.24560 2.28812 2.99310 3.15529 3.31669 3.67568 3.80511 3.92079 4.00254 4.17856 4.22574 4.30503 4.35372 4.45784 4.47485 4.50448 4.52069 4.63443 4.71244 4.92739 5.01303 5.08928 5.19892 5.21016 5.27183 5.39471 5.41169 5.46786 5.56427 6.19237 6.49649 6.86595 7.06393 7.24249 8.74196 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032152 B = 0.003683 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.647262 B = 7600.363864 C = 8146.292699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.711 5.711 14 C 0.156 3.844 15 H 0.066 0.934 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.083 4.083 21 H 0.091 0.909 22 C 0.079 3.921 23 O -0.583 6.583 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.414 0.586 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.560 -20.018 -1.386 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.364 5.364 14 C 0.051 3.949 15 H 0.084 0.916 16 C -0.165 4.165 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.102 4.102 21 H 0.109 0.891 22 C 0.001 3.999 23 O -0.391 6.391 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.251 0.749 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.394 -20.534 -0.807 22.595 hybrid contribution 1.681 1.826 -0.558 2.544 sum 11.076 -18.708 -1.365 21.783 Atomic orbital electron populations 1.70177 1.07981 1.28690 1.47931 1.26118 0.95944 1.03293 0.93682 0.85011 0.77817 0.75709 0.79513 1.18620 1.20402 1.18669 1.23185 0.95363 0.92074 1.59026 0.89926 1.85569 1.10502 0.99159 1.97055 1.23381 1.03571 0.94457 1.06728 1.20044 0.86270 0.86583 0.74920 1.90691 1.17336 1.86029 1.50014 1.45898 1.10155 1.04927 1.75449 1.20942 0.97171 0.79697 0.97087 0.91596 1.21876 1.01516 0.97358 0.95744 1.21503 0.98738 0.93334 1.01762 1.21551 0.99113 0.99155 0.95452 1.21462 1.01062 0.94211 0.97468 1.21307 0.98326 0.95447 0.95135 0.89092 1.22157 0.89684 0.93866 0.94168 1.86382 1.55137 1.62427 1.35160 0.91980 0.87341 0.87240 0.74904 0.90454 0.93983 0.90745 0.92525 0.90490 0.91091 0.92288 0.90412 0.93928 0.93245 0.75422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.82 5.49 84.85 0.47 1.29 16 3 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -31.31 9.50 67.95 0.65 -30.66 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.13 -5.12 6.16 71.23 0.44 -4.68 16 11 C 0.54 19.58 7.81 87.66 0.68 20.26 16 12 O -0.56 -25.92 15.53 -3.03 -0.05 -25.97 16 13 N -0.71 -17.87 4.30 -442.54 -1.91 -19.77 16 14 C 0.16 3.57 1.90 44.99 0.09 3.66 16 15 H 0.07 1.87 7.58 -2.39 -0.02 1.85 16 16 C -0.13 -2.80 5.49 30.59 0.17 -2.63 16 17 C -0.12 -2.05 5.92 30.59 0.18 -1.86 16 18 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 19 C -0.10 -1.64 5.10 30.58 0.16 -1.49 16 20 C -0.08 -1.45 2.00 -10.81 -0.02 -1.47 16 21 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 22 C 0.08 1.37 6.34 71.98 0.46 1.83 16 23 O -0.58 -9.22 13.19 -148.98 -1.97 -11.18 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 26 H 0.11 3.84 8.14 -2.39 -0.02 3.83 16 27 H 0.41 7.74 8.40 -92.71 -0.78 6.96 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.21 7.82 -2.39 -0.02 1.19 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.85 7.30 -2.38 -0.02 0.84 16 38 H 0.40 3.14 9.12 -74.06 -0.68 2.47 16 Total: -1.00 -75.60 325.23 0.28 -75.32 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.39 Total: 18.57 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 3.44 Total: -17.20 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.62 Total: -75.52 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -2.01 Total: -37.15 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -75.60 0.28 -75.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230178025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.597 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds