Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48501 * 109.47003 * 239.99991 * 3 2 1 5 5 H 1.48502 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46802 * 120.00127 * 3 2 1 7 7 C 1.38793 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00084 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00453 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47354 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99756 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99841 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47004 * 325.00110 * 14 13 11 16 16 C 1.52989 * 109.47058 * 85.00417 * 14 13 11 17 17 C 1.52993 * 109.47704 * 59.99731 * 16 14 13 18 18 C 1.53009 * 109.46793 * 59.99856 * 17 16 14 19 19 C 1.52989 * 109.47149 * 300.00111 * 18 17 16 20 20 C 1.53002 * 109.47252 * 60.00403 * 19 18 17 21 21 H 1.09001 * 109.47430 * 59.99214 * 20 19 18 22 22 C 1.52999 * 109.47645 * 179.97438 * 20 19 18 23 23 O 1.42905 * 109.46728 * 294.99875 * 22 20 19 24 24 H 0.96998 * 120.00451 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47218 * 59.99993 * 10 9 7 26 26 H 1.09008 * 109.46896 * 300.00188 * 10 9 7 27 27 H 0.96999 * 120.00298 * 359.97438 * 13 11 10 28 28 H 1.09001 * 109.47240 * 180.02562 * 16 14 13 29 29 H 1.09007 * 109.47303 * 299.99416 * 16 14 13 30 30 H 1.08998 * 109.47970 * 179.97438 * 17 16 14 31 31 H 1.09001 * 109.47239 * 300.00573 * 17 16 14 32 32 H 1.08993 * 109.46833 * 60.00647 * 18 17 16 33 33 H 1.08997 * 109.46604 * 180.02562 * 18 17 16 34 34 H 1.08993 * 109.47691 * 300.00011 * 19 18 17 35 35 H 1.09006 * 109.47359 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47486 * 174.99813 * 22 20 19 37 37 H 1.09001 * 109.47362 * 54.99090 * 22 20 19 38 38 H 0.96696 * 114.00036 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 1 1.4148 -7.7602 0.5880 16 6 2.0332 -8.1483 -1.4387 17 6 3.3181 -8.0849 -2.2667 18 6 4.3639 -9.0211 -1.6577 19 6 4.6612 -8.5878 -0.2209 20 6 3.3761 -8.6513 0.6072 21 1 2.9938 -9.6721 0.6071 22 6 3.6734 -8.2186 2.0443 23 8 4.5610 -9.1600 2.6511 24 1 -0.4851 0.8400 0.0004 25 1 3.1244 -3.7314 0.8894 26 1 3.1244 -3.7313 -0.8906 27 1 3.8008 -6.1835 -0.0022 28 1 1.6505 -9.1689 -1.4388 29 1 1.2881 -7.4813 -1.8726 30 1 3.1066 -8.3939 -3.2903 31 1 3.7004 -7.0641 -2.2667 32 1 3.9817 -10.0418 -1.6578 33 1 5.2795 -8.9755 -2.2473 34 1 5.0434 -7.5671 -0.2208 35 1 5.4059 -9.2551 0.2132 36 1 2.7434 -8.1783 2.6114 37 1 4.1383 -7.2328 2.0382 38 1 4.7937 -8.9482 3.5655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230178029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = -137.351375 kcal Electronic energy + Delta-G solvation = -19241.545711 eV Core-core repulsion = 16208.038276 eV Total energy + Delta-G solvation = -3033.507436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39200 -39.32056 -37.29884 -34.72240 -34.57283 -32.45684 -31.73929 -29.77902 -27.65846 -26.36291 -23.64343 -22.46609 -21.99871 -20.05557 -19.88552 -18.42355 -17.81833 -16.93849 -16.87223 -16.64090 -16.19852 -15.97834 -15.67774 -15.14204 -14.94623 -14.62638 -14.51095 -13.81815 -13.72824 -13.28009 -13.17143 -13.11351 -13.08848 -12.86487 -12.60516 -12.50472 -12.01921 -11.74698 -11.45157 -11.28359 -11.12751 -11.12137 -10.90859 -10.78983 -10.27611 -10.03947 -8.66275 -8.34308 -6.12419 1.27207 1.43922 1.47099 1.56842 1.63559 2.26425 2.31166 2.99854 3.17425 3.32877 3.68674 3.76324 3.95573 4.00127 4.15172 4.25390 4.30296 4.39161 4.47624 4.49865 4.51777 4.61073 4.63456 4.71566 4.84485 5.01056 5.12624 5.21523 5.22547 5.30923 5.41578 5.42485 5.47912 5.58909 6.19680 6.50788 6.87088 7.06945 7.26196 8.74659 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.003922 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.606025 B = 7136.746106 C = 7369.220107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.705 5.705 14 C 0.155 3.845 15 H 0.068 0.932 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.084 4.084 21 H 0.095 0.905 22 C 0.080 3.920 23 O -0.584 6.584 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.411 0.589 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -18.568 0.666 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.360 5.360 14 C 0.050 3.950 15 H 0.086 0.914 16 C -0.166 4.166 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.102 4.102 21 H 0.114 0.886 22 C 0.002 3.998 23 O -0.392 6.392 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.249 0.751 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 11.094 -19.108 0.091 22.095 hybrid contribution 1.615 1.746 0.565 2.445 sum 12.709 -17.362 0.656 21.527 Atomic orbital electron populations 1.70173 1.07984 1.28674 1.47962 1.26105 0.95926 1.03263 0.93693 0.85021 0.77826 0.75759 0.79498 1.18684 1.20406 1.18638 1.23176 0.95336 0.92085 1.58985 0.89971 1.85565 1.10465 0.99120 1.97043 1.23381 1.03570 0.94612 1.06611 1.20013 0.86271 0.86546 0.74974 1.90688 1.17321 1.86017 1.50107 1.45899 1.09969 1.04835 1.75273 1.20905 0.96912 0.80168 0.96995 0.91354 1.21868 0.98290 1.01869 0.94602 1.21497 0.94850 1.00098 0.98991 1.21527 0.98850 0.99293 0.95441 1.21510 0.96169 1.01942 0.94885 1.21326 0.95962 0.99685 0.93275 0.88630 1.22147 0.92656 0.91710 0.93266 1.86384 1.67640 1.52036 1.33120 0.91993 0.87332 0.87482 0.75117 0.89569 0.93962 0.91430 0.92657 0.91198 0.90796 0.91902 0.90611 0.94091 0.93120 0.75439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 2 C 0.01 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.55 -31.21 9.50 67.95 0.65 -30.56 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.54 19.44 7.81 87.66 0.68 20.13 16 12 O -0.56 -25.76 15.52 -3.02 -0.05 -25.80 16 13 N -0.70 -17.53 3.62 -442.54 -1.60 -19.13 16 14 C 0.15 3.48 2.23 44.99 0.10 3.58 16 15 H 0.07 1.87 7.58 -2.39 -0.02 1.85 16 16 C -0.13 -2.77 5.60 30.59 0.17 -2.60 16 17 C -0.12 -2.08 5.77 30.60 0.18 -1.91 16 18 C -0.11 -1.58 5.92 30.59 0.18 -1.39 16 19 C -0.11 -1.57 4.93 30.59 0.15 -1.42 16 20 C -0.08 -1.42 2.22 -10.79 -0.02 -1.44 16 21 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 22 C 0.08 1.36 6.20 71.98 0.45 1.81 16 23 O -0.58 -9.19 13.19 -148.98 -1.97 -11.16 16 24 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 25 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 26 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 27 H 0.41 7.92 6.67 -92.71 -0.62 7.30 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.09 7.60 -2.39 -0.02 1.07 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.88 6.50 -2.39 -0.02 0.86 16 35 H 0.08 1.12 7.82 -2.38 -0.02 1.10 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.84 7.61 -2.39 -0.02 0.82 16 38 H 0.40 3.12 9.12 -74.06 -0.68 2.45 16 Total: -1.00 -75.10 321.13 0.75 -74.36 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.23 Total: 18.63 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.44 Total: -17.17 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.31 Total: -74.83 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -2.01 Total: -36.96 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -75.10 0.75 -74.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230178029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.995 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds