Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.48931 * 2 1 4 4 C 1.52561 * 109.49385 * 239.95186 * 2 1 3 5 5 C 1.47094 * 114.33092 * 155.02076 * 4 2 1 6 6 C 1.54866 * 110.31971 * 62.80398 * 5 4 2 7 7 N 1.44578 * 109.60058 * 288.73155 * 6 5 4 8 8 C 1.34774 * 118.64675 * 270.73297 * 7 6 5 9 9 O 1.21276 * 120.00138 * 180.02562 * 8 7 6 10 10 C 1.50698 * 119.99876 * 359.97438 * 8 7 6 11 11 S 1.80999 * 109.46869 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00029 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99823 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00318 * 179.97438 * 12 11 10 15 15 N 1.31633 * 119.99986 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00158 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47134 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47091 * 120.00132 * 16 14 12 19 19 H 1.48500 * 109.46955 * 240.00251 * 16 14 12 20 20 C 1.47610 * 122.70910 * 90.74746 * 7 6 5 21 21 C 1.50888 * 109.49217 * 120.06425 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.04970 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.04951 * 1 2 3 25 25 H 0.96694 * 114.00219 * 59.99991 * 3 2 1 26 26 H 1.09007 * 108.51264 * 276.27491 * 4 2 1 27 27 H 1.08998 * 108.51015 * 33.76567 * 4 2 1 28 28 H 1.09003 * 109.32988 * 183.06671 * 5 4 2 29 29 H 1.08998 * 109.32717 * 302.54319 * 5 4 2 30 30 H 1.09000 * 109.45175 * 48.77406 * 6 5 4 31 31 H 1.09005 * 109.44510 * 168.72622 * 6 5 4 32 32 H 1.09001 * 109.47538 * 300.00253 * 10 8 7 33 33 H 1.09003 * 109.46871 * 60.00714 * 10 8 7 34 34 H 0.96996 * 120.00157 * 179.97438 * 15 14 12 35 35 H 1.09004 * 108.94161 * 78.53313 * 20 7 6 36 36 H 1.08999 * 108.94281 * 197.25040 * 20 7 6 37 37 H 1.09001 * 109.36339 * 332.04857 * 21 2 1 38 38 H 1.09003 * 109.36356 * 91.65970 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0068 1.3472 0.0000 4 6 2.0391 -0.7201 -1.2449 5 6 3.3866 -0.3133 -1.6719 6 6 4.4253 -0.6600 -0.5768 7 7 4.2524 0.2249 0.5534 8 6 4.9267 1.3916 0.5696 9 8 4.8003 2.1522 1.5057 10 6 5.8388 1.7507 -0.5751 11 16 6.5942 3.3653 -0.2609 12 6 7.5792 3.5299 -1.7126 13 1 7.5766 2.7487 -2.4584 14 6 8.3577 4.6639 -1.8982 15 7 8.3605 5.6162 -0.9895 16 14 9.4025 4.8380 -3.4369 17 1 9.2243 3.6390 -4.2945 18 1 8.9819 6.0491 -4.1864 19 1 10.8314 4.9648 -3.0531 20 6 3.3679 -0.0971 1.6905 21 6 2.0335 -0.7126 1.2310 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5131 -0.8905 24 1 -0.3634 0.5146 0.8896 25 1 1.7216 1.8653 0.7650 26 1 2.0481 -1.7918 -1.0454 27 1 1.3446 -0.5298 -2.0631 28 1 3.6459 -0.8347 -2.5933 29 1 3.3985 0.7615 -1.8530 30 1 4.2830 -1.6917 -0.2552 31 1 5.4311 -0.5409 -0.9799 32 1 6.6201 0.9963 -0.6676 33 1 5.2626 1.7924 -1.4994 34 1 8.9048 6.4086 -1.1190 35 1 3.8770 -0.8039 2.3457 36 1 3.1615 0.8166 2.2479 37 1 1.2977 -0.6179 2.0297 38 1 2.1821 -1.7679 1.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230369729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = -86.001803 kcal Electronic energy + Delta-G solvation = -20013.241269 eV Core-core repulsion = 16981.960518 eV Total energy + Delta-G solvation = -3031.280751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37033 -38.21202 -35.45275 -33.20862 -32.52493 -32.36229 -29.80963 -28.07522 -26.13859 -25.42506 -23.86075 -21.85464 -20.13114 -18.72830 -17.57242 -16.82583 -16.65531 -15.58391 -15.45314 -15.21100 -14.74959 -14.38994 -13.92887 -13.81065 -13.46373 -13.33321 -13.02457 -12.64698 -12.45701 -12.35754 -11.92540 -11.65783 -11.59293 -11.17851 -11.09181 -11.02460 -10.93939 -10.73083 -10.65235 -10.53929 -9.91150 -9.71183 -9.13450 -9.00967 -8.25184 -8.11229 -6.40497 -6.15347 -3.84214 3.08744 3.25272 3.28654 3.32990 3.37383 3.74734 4.17996 4.27140 4.48176 4.58387 4.76859 4.91213 4.95422 5.07649 5.19689 5.22130 5.30144 5.35835 5.45668 5.54456 5.63391 5.65926 5.73678 5.76854 5.79088 5.97959 5.99783 6.05040 6.08568 6.13755 6.25787 6.47848 6.92725 7.66100 7.76308 7.78536 8.42016 8.79191 9.30146 10.92210 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.004662 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.170840 B = 6004.091373 C = 6278.555081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.134 3.866 3 O -0.540 6.540 4 C -0.098 4.098 5 C -0.137 4.137 6 C 0.115 3.885 7 N -0.599 5.599 8 C 0.542 3.458 9 O -0.525 6.525 10 C -0.148 4.148 11 S -0.064 6.064 12 C -0.532 4.532 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.917 3.083 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.125 3.875 21 C -0.161 4.161 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.372 0.628 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.267 0.733 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 -16.173 1.181 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.093 3.907 3 O -0.345 6.345 4 C -0.136 4.136 5 C -0.176 4.176 6 C -0.009 4.009 7 N -0.333 5.333 8 C 0.330 3.670 9 O -0.401 6.401 10 C -0.298 4.298 11 S 0.163 5.837 12 C -0.680 4.680 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.504 5.504 16 Si 0.743 3.257 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.002 3.998 21 C -0.200 4.200 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.219 0.781 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.270 -15.102 2.066 20.880 hybrid contribution 0.385 -0.754 -1.639 1.845 sum -13.885 -15.856 0.427 21.080 Atomic orbital electron populations 1.22561 0.96034 1.02213 1.02525 1.20569 0.91786 0.83770 0.94602 1.86707 1.76541 1.22092 1.49200 1.20425 0.97865 0.98812 0.96459 1.21156 0.94555 1.03836 0.98045 1.21491 0.99459 0.93381 0.86615 1.47389 1.45230 1.19914 1.20814 1.20154 0.79615 0.79952 0.87238 1.90641 1.64283 1.49122 1.36025 1.23563 1.00711 1.06085 0.99453 1.85342 1.54567 1.14030 1.29798 1.22914 1.30493 1.07834 1.06777 0.91012 1.24977 0.96470 0.94815 0.97325 1.70034 1.38815 1.07897 1.33661 0.86144 0.79583 0.78207 0.81724 1.19641 1.20618 1.20618 1.21444 0.89115 1.01008 0.88209 1.22581 0.97638 1.00858 0.98901 0.91946 0.91849 0.92378 0.78072 0.91780 0.92045 0.91317 0.90031 0.91325 0.90158 0.89787 0.89251 0.92343 0.92662 0.89391 0.90680 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 8.44 37.16 0.31 -1.10 16 2 C 0.13 1.32 0.96 -91.91 -0.09 1.23 16 3 O -0.54 -7.12 9.17 -35.23 -0.32 -7.45 16 4 C -0.10 -0.95 4.54 -29.79 -0.14 -1.09 16 5 C -0.14 -1.56 5.38 -28.58 -0.15 -1.72 16 6 C 0.12 1.37 5.17 -4.08 -0.02 1.34 16 7 N -0.60 -8.71 1.73 -172.52 -0.30 -9.01 16 8 C 0.54 10.63 7.01 -10.99 -0.08 10.55 16 9 O -0.53 -12.14 15.14 5.56 0.08 -12.06 16 10 C -0.15 -3.15 4.65 36.00 0.17 -2.98 16 11 S -0.06 -1.79 20.57 -107.50 -2.21 -4.00 16 12 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 13 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 14 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 15 N -0.87 -26.63 13.22 55.49 0.73 -25.89 16 16 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.13 1.51 5.52 -2.93 -0.02 1.49 16 21 C -0.16 -1.43 5.15 -27.29 -0.14 -1.57 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 24 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 25 H 0.37 4.34 8.78 45.56 0.40 4.74 16 26 H 0.06 0.51 7.36 -51.92 -0.38 0.13 16 27 H 0.06 0.58 7.80 -51.93 -0.41 0.18 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.20 6.57 -51.93 -0.34 0.86 16 30 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.08 0.99 6.25 -51.93 -0.32 0.67 16 32 H 0.08 1.67 7.30 -51.91 -0.38 1.29 16 33 H 0.09 1.83 7.09 -51.92 -0.37 1.46 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.21 6.75 -51.93 -0.35 0.86 16 37 H 0.07 0.56 7.74 -51.93 -0.40 0.16 16 38 H 0.07 0.55 7.32 -51.93 -0.38 0.17 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -34.64 310.28 -7.32 -41.96 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.00 Total: 2.02 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 0.05 Total: -7.00 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.44 Total: -34.90 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.24 Total: -19.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.64 -7.32 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230369729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.039 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds