Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.48931 * 2 1 4 4 C 1.52561 * 109.49385 * 239.95186 * 2 1 3 5 5 C 1.47094 * 114.33092 * 155.02076 * 4 2 1 6 6 C 1.54866 * 110.31971 * 62.80398 * 5 4 2 7 7 N 1.44578 * 109.60058 * 288.73155 * 6 5 4 8 8 C 1.34774 * 118.64675 * 270.73297 * 7 6 5 9 9 O 1.21276 * 120.00138 * 180.02562 * 8 7 6 10 10 C 1.50698 * 119.99876 * 359.97438 * 8 7 6 11 11 S 1.80999 * 109.46869 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00029 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99823 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00318 * 179.97438 * 12 11 10 15 15 N 1.31633 * 119.99986 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00158 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47134 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47091 * 120.00132 * 16 14 12 19 19 H 1.48500 * 109.46955 * 240.00251 * 16 14 12 20 20 C 1.47610 * 122.70910 * 90.74746 * 7 6 5 21 21 C 1.50888 * 109.49217 * 120.06425 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.04970 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.04951 * 1 2 3 25 25 H 0.96694 * 114.00219 * 59.99991 * 3 2 1 26 26 H 1.09007 * 108.51264 * 276.27491 * 4 2 1 27 27 H 1.08998 * 108.51015 * 33.76567 * 4 2 1 28 28 H 1.09003 * 109.32988 * 183.06671 * 5 4 2 29 29 H 1.08998 * 109.32717 * 302.54319 * 5 4 2 30 30 H 1.09000 * 109.45175 * 48.77406 * 6 5 4 31 31 H 1.09005 * 109.44510 * 168.72622 * 6 5 4 32 32 H 1.09001 * 109.47538 * 300.00253 * 10 8 7 33 33 H 1.09003 * 109.46871 * 60.00714 * 10 8 7 34 34 H 0.96996 * 120.00157 * 179.97438 * 15 14 12 35 35 H 1.09004 * 108.94161 * 78.53313 * 20 7 6 36 36 H 1.08999 * 108.94281 * 197.25040 * 20 7 6 37 37 H 1.09001 * 109.36339 * 332.04857 * 21 2 1 38 38 H 1.09003 * 109.36356 * 91.65970 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0068 1.3472 0.0000 4 6 2.0391 -0.7201 -1.2449 5 6 3.3866 -0.3133 -1.6719 6 6 4.4253 -0.6600 -0.5768 7 7 4.2524 0.2249 0.5534 8 6 4.9267 1.3916 0.5696 9 8 4.8003 2.1522 1.5057 10 6 5.8388 1.7507 -0.5751 11 16 6.5942 3.3653 -0.2609 12 6 7.5792 3.5299 -1.7126 13 1 7.5766 2.7487 -2.4584 14 6 8.3577 4.6639 -1.8982 15 7 8.3605 5.6162 -0.9895 16 14 9.4025 4.8380 -3.4369 17 1 9.2243 3.6390 -4.2945 18 1 8.9819 6.0491 -4.1864 19 1 10.8314 4.9648 -3.0531 20 6 3.3679 -0.0971 1.6905 21 6 2.0335 -0.7126 1.2310 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5131 -0.8905 24 1 -0.3634 0.5146 0.8896 25 1 1.7216 1.8653 0.7650 26 1 2.0481 -1.7918 -1.0454 27 1 1.3446 -0.5298 -2.0631 28 1 3.6459 -0.8347 -2.5933 29 1 3.3985 0.7615 -1.8530 30 1 4.2830 -1.6917 -0.2552 31 1 5.4311 -0.5409 -0.9799 32 1 6.6201 0.9963 -0.6676 33 1 5.2626 1.7924 -1.4994 34 1 8.9048 6.4086 -1.1190 35 1 3.8770 -0.8039 2.3457 36 1 3.1615 0.8166 2.2479 37 1 1.2977 -0.6179 2.0297 38 1 2.1821 -1.7679 1.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230369729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = -110.312170 kcal Electronic energy + Delta-G solvation = -20014.295446 eV Core-core repulsion = 16981.960518 eV Total energy + Delta-G solvation = -3032.334928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46958 -39.44371 -36.62705 -34.58281 -34.19566 -33.45397 -31.11863 -29.22854 -27.65006 -27.07582 -24.74555 -22.97023 -20.96002 -20.24522 -19.34768 -18.07833 -17.83842 -16.88331 -16.78402 -16.56999 -16.06796 -15.92964 -15.43796 -14.92824 -14.57932 -14.51881 -14.24741 -13.92364 -13.61308 -13.35051 -13.22233 -13.09367 -12.91077 -12.64195 -12.53757 -12.50234 -12.07507 -11.96039 -11.69825 -11.55798 -11.30301 -11.14898 -10.80745 -10.63160 -10.24003 -9.45017 -8.64775 -8.34027 -6.11616 1.28463 1.41107 1.47712 1.59035 1.75348 2.24595 2.31027 2.99777 3.30064 3.38812 3.69440 3.84828 3.88393 4.03196 4.06687 4.10739 4.26405 4.35272 4.50189 4.53330 4.61046 4.76742 4.78505 4.88743 4.92942 4.96010 5.00546 5.08510 5.21423 5.34606 5.37419 5.41775 5.53721 5.80762 6.20415 6.45474 6.91127 7.06989 7.32477 8.75689 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.004662 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.170840 B = 6004.091373 C = 6278.555081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 O -0.569 6.569 4 C -0.102 4.102 5 C -0.132 4.132 6 C 0.105 3.895 7 N -0.581 5.581 8 C 0.539 3.461 9 O -0.571 6.571 10 C -0.120 4.120 11 S -0.151 6.151 12 C -0.546 4.546 13 H 0.079 0.921 14 C 0.014 3.986 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.272 1.272 20 C 0.120 3.880 21 C -0.149 4.149 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.373 0.627 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.271 0.729 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.123 -19.144 -0.073 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.084 3.916 3 O -0.376 6.376 4 C -0.139 4.139 5 C -0.170 4.170 6 C -0.018 4.018 7 N -0.313 5.313 8 C 0.327 3.673 9 O -0.451 6.451 10 C -0.271 4.271 11 S 0.076 5.924 12 C -0.693 4.693 13 H 0.097 0.903 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.820 3.180 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.002 4.002 21 C -0.187 4.187 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.220 0.780 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.011 -18.134 0.803 23.555 hybrid contribution 0.516 0.062 -1.223 1.329 sum -14.496 -18.072 -0.420 23.171 Atomic orbital electron populations 1.22482 0.94507 1.03425 1.02229 1.20856 0.93060 0.82379 0.95321 1.86699 1.77278 1.24020 1.49563 1.20507 0.96553 1.00463 0.96425 1.21094 0.95650 1.01475 0.98785 1.21809 0.99477 0.94623 0.85905 1.47371 1.43833 1.18138 1.21978 1.19882 0.80029 0.81285 0.86108 1.90621 1.66000 1.51042 1.37393 1.23373 1.01153 1.01944 1.00665 1.85486 1.55917 1.19837 1.31172 1.23221 1.30812 1.08511 1.06799 0.90288 1.26123 0.97710 0.94114 1.01104 1.70194 1.39883 1.08645 1.36097 0.84909 0.77420 0.78726 0.76906 1.18109 1.19862 1.19704 1.21670 0.90603 1.00594 0.87358 1.22522 0.95697 1.01545 0.98904 0.89869 0.92980 0.91952 0.77977 0.88733 0.92003 0.89323 0.94062 0.87482 0.90762 0.88241 0.88623 0.91989 0.91094 0.91753 0.88770 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 8.44 71.98 0.61 -1.68 16 2 C 0.12 2.16 0.96 -11.63 -0.01 2.15 16 3 O -0.57 -15.04 9.17 -148.98 -1.37 -16.40 16 4 C -0.10 -1.66 4.54 28.61 0.13 -1.53 16 5 C -0.13 -2.72 5.38 29.40 0.16 -2.56 16 6 C 0.11 2.22 5.17 87.38 0.45 2.67 16 7 N -0.58 -16.23 1.73 -818.12 -1.41 -17.64 16 8 C 0.54 21.56 7.01 87.66 0.61 22.18 16 9 O -0.57 -27.58 15.14 -3.02 -0.05 -27.63 16 10 C -0.12 -5.23 4.65 71.24 0.33 -4.90 16 11 S -0.15 -8.82 20.57 -56.49 -1.16 -9.98 16 12 C -0.55 -32.36 9.50 67.95 0.65 -31.71 16 13 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 14 C 0.01 0.82 5.49 84.86 0.47 1.29 16 15 N -0.91 -57.29 13.22 21.65 0.29 -57.00 16 16 Si 1.00 44.68 29.55 68.60 2.03 46.71 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.12 2.68 5.52 86.49 0.48 3.16 16 21 C -0.15 -2.11 5.15 30.23 0.16 -1.95 16 22 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 24 H 0.06 0.79 8.10 -2.38 -0.02 0.77 16 25 H 0.37 9.09 8.78 -74.06 -0.65 8.44 16 26 H 0.09 1.00 7.36 -2.38 -0.02 0.98 16 27 H 0.06 1.01 7.80 -2.39 -0.02 0.99 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.20 6.57 -2.39 -0.02 1.18 16 30 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16 31 H 0.07 1.68 6.25 -2.38 -0.01 1.66 16 32 H 0.10 3.96 7.30 -2.40 -0.02 3.95 16 33 H 0.10 4.01 7.09 -2.39 -0.02 3.99 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.78 6.75 -2.39 -0.02 1.76 16 37 H 0.09 1.04 7.74 -2.39 -0.02 1.03 16 38 H 0.10 0.95 7.32 -2.39 -0.02 0.94 16 Total: -1.00 -78.90 310.28 2.76 -76.13 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.41 Total: 18.71 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.03 Total: -12.90 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -1.13 Total: -74.65 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.41 Total: -44.03 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -78.90 2.76 -76.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230369729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.178 kcal (2) G-P(sol) polarization free energy of solvation -78.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds