Wall clock time and date at job start Mon Mar 30 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48500 * 109.46972 * 269.99705 * 3 2 1 5 5 H 1.48500 * 109.47091 * 29.99795 * 3 2 1 6 6 H 1.48498 * 109.46835 * 150.00174 * 3 2 1 7 7 C 1.37879 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99989 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40182 * 66.45890 * 9 7 2 11 11 O 1.42096 * 106.40200 * 293.54152 * 9 7 2 12 12 N 1.65601 * 107.21779 * 180.02562 * 9 7 2 13 13 C 1.46942 * 120.65930 * 270.02343 * 12 9 7 14 14 C 1.53166 * 108.74633 * 126.24331 * 13 12 9 15 15 C 1.53102 * 109.36284 * 54.80639 * 14 13 12 16 16 H 1.08997 * 109.55533 * 58.90325 * 15 14 13 17 17 C 1.53081 * 109.22404 * 179.21189 * 15 14 13 18 18 C 1.53009 * 109.37567 * 59.31202 * 17 15 14 19 19 C 1.52982 * 109.52590 * 60.08761 * 18 17 15 20 20 C 1.53015 * 109.52935 * 300.20810 * 19 18 17 21 21 C 1.52975 * 109.40304 * 59.85160 * 20 19 18 22 22 H 1.08995 * 109.46965 * 59.65341 * 21 20 19 23 23 C 1.46916 * 120.66407 * 89.99664 * 12 9 7 24 24 H 0.97007 * 120.00085 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.58691 * 246.02400 * 13 12 9 26 26 H 1.08997 * 109.58925 * 6.46450 * 13 12 9 27 27 H 1.08999 * 109.48993 * 174.76952 * 14 13 12 28 28 H 1.08993 * 109.49167 * 294.83658 * 14 13 12 29 29 H 1.09007 * 109.46824 * 299.35116 * 17 15 14 30 30 H 1.08994 * 109.49435 * 179.29329 * 17 15 14 31 31 H 1.09002 * 109.46193 * 300.07346 * 18 17 15 32 32 H 1.09004 * 109.45683 * 180.10258 * 18 17 15 33 33 H 1.09006 * 109.46529 * 60.22757 * 19 18 17 34 34 H 1.09003 * 109.45996 * 180.20057 * 19 18 17 35 35 H 1.09000 * 109.48522 * 179.83407 * 20 19 18 36 36 H 1.08997 * 109.48059 * 299.87132 * 20 19 18 37 37 H 1.09000 * 109.57262 * 113.75574 * 23 12 9 38 38 H 1.09005 * 109.67386 * 353.44609 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1234 -2.7200 -0.0019 10 8 0.4518 -2.7944 -1.2519 11 8 0.4508 -2.7961 1.2475 12 7 2.2482 -3.9355 -0.0016 13 6 2.7584 -4.4845 -1.2654 14 6 4.2885 -4.4157 -1.2499 15 6 4.8160 -5.1271 -0.0010 16 1 4.4828 -6.1649 -0.0042 17 6 6.3458 -5.0735 0.0012 18 6 6.8026 -3.6132 -0.0077 19 6 6.2669 -2.9022 1.2364 20 6 4.7379 -2.9613 1.2408 21 6 4.2859 -4.4227 1.2503 22 1 4.6768 -4.9181 2.1390 23 6 2.7561 -4.4859 1.2623 24 1 -0.4850 0.8401 -0.0004 25 1 2.4402 -5.5220 -1.3681 26 1 2.3746 -3.8979 -2.1001 27 1 4.6835 -4.9040 -2.1407 28 1 4.6055 -3.3729 -1.2356 29 1 6.7284 -5.5797 -0.8852 30 1 6.7258 -5.5679 0.8952 31 1 6.4211 -3.1188 -0.9011 32 1 7.8920 -3.5735 -0.0080 33 1 6.6519 -3.3940 2.1298 34 1 6.5900 -1.8612 1.2271 35 1 4.3571 -2.4571 2.1290 36 1 4.3525 -2.4674 0.3489 37 1 2.4343 -5.5223 1.3647 38 1 2.3729 -3.9003 2.0980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250835335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:39 Heat of formation + Delta-G solvation = -138.826974 kcal Electronic energy + Delta-G solvation = -21050.603106 eV Core-core repulsion = 18017.031684 eV Total energy + Delta-G solvation = -3033.571423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91650 -37.46115 -36.53276 -36.12367 -35.14308 -33.16253 -31.69643 -30.04487 -28.25038 -25.64790 -23.98524 -23.07963 -21.99706 -20.71558 -19.66616 -18.53765 -18.20054 -17.00063 -16.67925 -16.35993 -16.05488 -15.56748 -15.39416 -14.79130 -14.69579 -14.33957 -14.03207 -13.74541 -13.54987 -13.29495 -13.19052 -13.02394 -12.80737 -12.61883 -12.50338 -12.35831 -12.32660 -12.05083 -11.78171 -11.72182 -11.46919 -11.24969 -11.11671 -10.85249 -10.75314 -10.59684 -9.62659 -8.72364 -7.44580 0.34194 1.31610 1.31836 1.47673 2.19558 2.59008 2.87198 3.76208 3.78554 3.83138 3.92244 4.15732 4.27677 4.31768 4.37906 4.44423 4.56323 4.63286 4.67793 4.73562 4.79992 4.87394 4.92661 4.97695 4.99602 5.10829 5.15198 5.21010 5.28813 5.34883 5.43789 5.46136 5.48339 5.60242 5.65089 5.79482 5.99492 6.08213 6.81123 8.22333 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.008699 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.982696 B = 3217.870215 C = 3978.298424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.247 1.247 7 C -1.029 5.029 8 H 0.123 0.877 9 S 2.714 3.286 10 O -1.046 7.046 11 O -1.045 7.045 12 N -1.004 6.004 13 C 0.117 3.883 14 C -0.129 4.129 15 C -0.074 4.074 16 H 0.084 0.916 17 C -0.104 4.104 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.131 4.131 21 C -0.088 4.088 22 H 0.097 0.903 23 C 0.121 3.879 24 H 0.297 0.703 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.798 -8.488 0.438 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.802 3.198 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.170 1.170 7 C -1.163 5.163 8 H 0.141 0.859 9 S 2.817 3.183 10 O -1.036 7.036 11 O -1.035 7.035 12 N -0.843 5.843 13 C -0.008 4.008 14 C -0.168 4.168 15 C -0.093 4.093 16 H 0.102 0.898 17 C -0.141 4.141 18 C -0.159 4.159 19 C -0.150 4.150 20 C -0.168 4.168 21 C -0.107 4.107 22 H 0.116 0.884 23 C -0.004 4.004 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.651 -8.589 0.439 16.989 hybrid contribution -0.002 1.428 0.032 1.429 sum 14.650 -7.161 0.471 16.313 Atomic orbital electron populations 1.70008 1.08818 1.32121 1.42054 1.25969 0.95237 1.05199 0.87658 0.85220 0.79302 0.75223 0.80032 1.17904 1.18892 1.17001 1.31009 1.07165 1.12232 1.65878 0.85915 1.00078 0.72922 0.74041 0.71295 1.93282 1.74788 1.88473 1.47052 1.93281 1.74753 1.88447 1.47045 1.57597 1.61056 1.53485 1.12116 1.21477 0.95679 0.99388 0.84240 1.22083 0.93429 1.01863 0.99394 1.21100 0.95941 0.99161 0.93090 0.89763 1.21525 0.93688 0.96150 1.02758 1.21592 1.00440 0.96307 0.97609 1.21486 0.94093 1.00237 0.99180 1.21775 0.96807 0.96661 1.01580 1.21470 0.93175 0.96284 0.99803 0.88441 1.21506 0.95225 0.99304 0.84392 0.89297 0.90319 0.91622 0.88894 0.92001 0.90672 0.90848 0.92705 0.90930 0.90959 0.92894 0.93695 0.92545 0.90281 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.71 13.19 21.45 0.28 -54.43 16 2 C 0.07 4.04 5.46 84.66 0.46 4.50 16 3 Si 0.98 41.95 29.54 68.60 2.03 43.98 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -1.03 -57.01 9.71 67.73 0.66 -56.35 16 8 H 0.12 6.15 5.69 -2.91 -0.02 6.13 16 9 S 2.71 150.15 4.97 -56.49 -0.28 149.87 16 10 O -1.05 -64.19 16.74 -128.00 -2.14 -66.33 16 11 O -1.05 -64.15 16.74 -128.00 -2.14 -66.29 16 12 N -1.00 -40.89 2.75 -513.25 -1.41 -42.30 16 13 C 0.12 3.93 6.38 86.35 0.55 4.48 16 14 C -0.13 -3.34 4.62 30.68 0.14 -3.19 16 15 C -0.07 -1.62 2.48 -10.71 -0.03 -1.65 16 16 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 17 C -0.10 -1.78 5.45 30.62 0.17 -1.61 16 18 C -0.12 -2.39 5.64 30.59 0.17 -2.22 16 19 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 20 C -0.13 -3.94 4.82 30.59 0.15 -3.80 16 21 C -0.09 -2.31 2.45 -10.74 -0.03 -2.33 16 22 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 23 C 0.12 4.10 5.77 86.34 0.50 4.60 16 24 H 0.30 16.29 8.31 -92.70 -0.77 15.52 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.07 2.49 7.13 -2.39 -0.02 2.47 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.81 4.73 -2.39 -0.01 1.80 16 29 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.21 6.40 -2.39 -0.02 1.19 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 2.01 3.81 -2.39 -0.01 2.00 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.50 7.13 -2.38 -0.02 2.49 16 Total: -1.00 -75.44 296.71 0.31 -75.13 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.05 Total: 20.34 kcal Atomic # 6 Polarization: -62.90 SS G_CDS: 2.93 Total: -59.98 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -1.13 Total: -96.73 kcal Atomic # 8 Polarization: -128.33 SS G_CDS: -4.28 Total: -132.62 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 150.15 SS G_CDS: -0.28 Total: 149.87 kcal Total: -75.44 0.31 -75.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250835335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.694 kcal (2) G-P(sol) polarization free energy of solvation -75.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds