Wall clock time and date at job start Mon Mar 30 2020 01:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48503 * 109.47022 * 274.21133 * 3 2 1 5 5 H 1.48503 * 109.46892 * 34.21042 * 3 2 1 6 6 H 1.48496 * 109.47355 * 154.20945 * 3 2 1 7 7 C 1.37880 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00463 * 352.36750 * 7 2 1 9 9 C 1.50708 * 119.99915 * 172.64569 * 7 2 1 10 10 C 1.53001 * 115.54677 * 300.11108 * 9 7 2 11 11 O 1.42896 * 109.47022 * 302.67018 * 10 9 7 12 12 C 1.34910 * 116.99600 * 184.70707 * 11 10 9 13 13 O 1.21618 * 120.00235 * 5.11761 * 12 11 10 14 14 C 1.46236 * 119.99763 * 185.12128 * 12 11 10 15 15 C 1.34909 * 119.99988 * 173.28473 * 14 12 11 16 16 C 1.47177 * 119.99880 * 349.47550 * 15 14 12 17 17 C 1.40291 * 120.58811 * 133.36140 * 16 15 14 18 18 C 1.38275 * 118.26676 * 180.02562 * 17 16 15 19 19 C 1.38402 * 119.33619 * 359.97438 * 18 17 16 20 20 N 1.31934 * 121.14027 * 0.02562 * 19 18 17 21 21 C 1.31653 * 121.90977 * 359.69413 * 20 19 18 22 22 C 1.52996 * 117.50018 * 154.43941 * 9 7 2 23 23 C 1.53001 * 117.49889 * 85.77745 * 9 7 2 24 24 H 0.96998 * 119.99924 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46914 * 62.67248 * 10 9 7 26 26 H 1.08999 * 109.46616 * 182.66707 * 10 9 7 27 27 H 1.07994 * 119.99977 * 353.27952 * 14 12 11 28 28 H 1.08003 * 119.99956 * 169.47566 * 15 14 12 29 29 H 1.08000 * 120.86002 * 359.97438 * 17 16 15 30 30 H 1.08000 * 120.33053 * 180.02562 * 18 17 16 31 31 H 1.07996 * 119.42986 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.74734 * 180.31483 * 21 20 19 33 33 H 1.08999 * 117.49838 * 0.02562 * 22 9 7 34 34 H 1.08997 * 117.49821 * 145.01800 * 22 9 7 35 35 H 1.08997 * 117.50019 * 214.97813 * 23 9 7 36 36 H 1.08998 * 117.50017 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4077 2.0977 -1.3963 5 1 1.4940 2.6253 0.7872 6 1 3.5884 1.4161 0.6091 7 6 2.0045 -1.1941 0.0005 8 1 1.4717 -2.1252 0.1252 9 6 3.5023 -1.1996 -0.1665 10 6 4.0232 -0.5879 -1.4686 11 8 3.4430 -1.2712 -2.5814 12 6 3.8741 -0.9173 -3.8098 13 8 4.7847 -0.1199 -3.9284 14 6 3.2465 -1.4926 -4.9988 15 6 3.5825 -1.0404 -6.2246 16 6 4.3976 0.1773 -6.3618 17 6 5.4969 0.2061 -7.2331 18 6 6.2298 1.3751 -7.3241 19 6 5.8594 2.4688 -6.5612 20 7 4.8207 2.4143 -5.7496 21 6 4.0871 1.3276 -5.6303 22 6 4.2736 -2.3862 0.4148 23 6 4.3541 -1.0152 1.0910 24 1 -0.4850 0.8400 -0.0004 25 1 3.7520 0.4672 -1.5084 26 1 5.1081 -0.6858 -1.5074 27 1 2.5141 -2.2795 -4.8956 28 1 3.2532 -1.5720 -7.1053 29 1 5.7641 -0.6624 -7.8167 30 1 7.0822 1.4343 -7.9846 31 1 6.4310 3.3825 -6.6309 32 1 3.2411 1.3232 -4.9589 33 1 3.6978 -3.1631 0.9177 34 1 5.1524 -2.7308 -0.1302 35 1 5.2858 -0.4586 0.9907 36 1 3.8312 -0.8895 2.0391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255276885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:06 Heat of formation + Delta-G solvation = 7.188891 kcal Electronic energy + Delta-G solvation = -20560.565546 eV Core-core repulsion = 17397.881895 eV Total energy + Delta-G solvation = -3162.683651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47718 -39.54240 -37.24310 -35.64873 -34.24730 -32.15069 -32.14295 -30.14969 -27.52811 -25.49144 -24.38860 -23.44962 -22.26153 -21.55273 -19.50483 -19.08048 -17.69695 -17.12945 -16.70204 -16.26814 -15.81985 -15.69840 -14.76379 -14.42660 -14.35175 -13.79911 -13.49207 -13.30918 -13.07854 -12.88837 -12.55484 -12.39494 -12.08485 -11.70780 -11.06057 -10.88537 -10.64419 -10.50791 -10.30421 -10.12325 -9.92196 -9.62940 -9.54752 -9.29175 -9.12235 -8.68289 -8.48046 -8.38329 -6.13114 -4.11844 0.53534 1.34551 1.62622 3.17823 3.26638 3.29414 3.37968 3.41920 3.89859 4.39209 4.41828 4.69544 4.75424 4.81014 4.89317 4.99760 5.17180 5.27367 5.38964 5.49886 5.65756 5.72556 5.83629 5.89550 5.93525 6.02571 6.12167 6.17916 6.22522 6.39332 6.45664 6.63077 6.71812 6.82817 7.06598 7.14360 7.69326 8.06553 8.26467 8.48565 8.90386 9.50065 10.98832 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.005479 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.648872 B = 5109.549380 C = 5387.639495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.860 3.140 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.475 4.475 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.105 3.895 11 O -0.311 6.311 12 C 0.477 3.523 13 O -0.514 6.514 14 C -0.164 4.164 15 C -0.030 4.030 16 C -0.119 4.119 17 C -0.061 4.061 18 C -0.185 4.185 19 C 0.101 3.899 20 N -0.488 5.488 21 C 0.171 3.829 22 C -0.178 4.178 23 C -0.186 4.186 24 H 0.265 0.735 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.870 -0.869 -14.558 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.688 3.312 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.177 1.177 7 C -0.513 4.513 8 H 0.098 0.902 9 C -0.007 4.007 10 C 0.031 3.969 11 O -0.225 6.225 12 C 0.323 3.677 13 O -0.406 6.406 14 C -0.183 4.183 15 C -0.049 4.049 16 C -0.121 4.121 17 C -0.086 4.086 18 C -0.205 4.205 19 C -0.054 4.054 20 N -0.197 5.197 21 C 0.012 3.988 22 C -0.215 4.215 23 C -0.223 4.223 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.170 0.830 28 H 0.165 0.835 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.760 0.217 -14.024 17.088 hybrid contribution 0.758 0.253 -0.352 0.873 sum 10.519 0.470 -14.377 17.820 Atomic orbital electron populations 1.69889 1.06215 1.27073 1.49741 1.24880 0.94523 0.98736 0.93977 0.87148 0.81462 0.84123 0.78453 1.20466 1.21476 1.17673 1.20198 0.86613 0.94760 1.49680 0.90209 1.19325 0.95210 0.98475 0.87670 1.22506 0.95086 0.95307 0.84029 1.86312 1.62181 1.60164 1.13887 1.21549 0.81501 0.79321 0.85340 1.90880 1.29252 1.33026 1.87480 1.22529 1.02278 1.03871 0.89643 1.22322 0.93018 0.92537 0.97030 1.19949 0.97832 0.95338 0.99023 1.21563 0.93345 0.97895 0.95828 1.21927 1.01633 0.94438 1.02526 1.22784 0.93109 0.98082 0.91439 1.67610 1.06155 1.28122 1.17844 1.22821 0.96608 0.87203 0.92157 1.22800 1.01702 0.91886 1.05071 1.23099 1.00981 0.99499 0.98766 0.92502 0.92609 0.93290 0.82988 0.83469 0.84948 0.85029 0.83173 0.83687 0.89325 0.90891 0.91165 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.08 2.34 5.46 -17.82 -0.10 2.24 16 3 Si 0.86 21.78 24.74 -169.99 -4.21 17.58 16 4 H -0.28 -7.12 7.01 56.52 0.40 -6.72 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.25 -6.05 6.02 56.52 0.34 -5.71 16 7 C -0.48 -13.23 9.21 -34.44 -0.32 -13.55 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 9 C -0.01 -0.14 1.11 -155.66 -0.17 -0.31 16 10 C 0.10 2.39 4.88 37.16 0.18 2.57 16 11 O -0.31 -6.84 9.91 -41.07 -0.41 -7.25 16 12 C 0.48 8.99 7.05 33.94 0.24 9.22 16 13 O -0.51 -10.48 12.00 -19.35 -0.23 -10.71 16 14 C -0.16 -2.27 10.06 -37.55 -0.38 -2.65 16 15 C -0.03 -0.34 9.82 -37.14 -0.36 -0.71 16 16 C -0.12 -1.63 4.42 -104.91 -0.46 -2.09 16 17 C -0.06 -0.69 9.95 -38.80 -0.39 -1.07 16 18 C -0.19 -2.03 10.09 -39.51 -0.40 -2.43 16 19 C 0.10 1.32 11.17 -17.45 -0.19 1.12 16 20 N -0.49 -8.15 10.34 -12.83 -0.13 -8.29 16 21 C 0.17 2.82 7.88 -17.04 -0.13 2.69 16 22 C -0.18 -3.62 9.94 -26.69 -0.27 -3.88 16 23 C -0.19 -3.92 8.56 -26.69 -0.23 -4.15 16 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.06 1.36 4.54 -51.93 -0.24 1.12 16 26 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 27 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.15 2.56 7.32 -52.48 -0.38 2.18 16 33 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -33.31 309.68 -6.98 -40.29 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.46 Total: 2.84 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.98 Total: -12.99 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.64 Total: -34.42 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.64 Total: -17.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.21 Total: 17.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.31 -6.98 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255276885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.474 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds