Wall clock time and date at job start Mon Mar 30 2020 01:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47450 * 240.00377 * 3 2 1 5 5 H 1.48498 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47516 * 120.00208 * 3 2 1 7 7 C 1.37879 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99736 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50289 * 299.91902 * 9 7 2 11 11 C 1.53112 * 109.50180 * 60.00142 * 9 7 2 12 12 C 1.53127 * 109.15906 * 177.63197 * 11 9 7 13 13 C 1.53032 * 109.27733 * 302.34688 * 12 11 9 14 14 N 1.46848 * 109.52656 * 59.17975 * 13 12 11 15 15 C 1.46895 * 111.00394 * 174.16132 * 14 13 12 16 16 H 1.08997 * 109.64376 * 58.04025 * 15 14 13 17 17 C 1.53880 * 109.64279 * 297.61702 * 15 14 13 18 18 C 1.55047 * 106.62412 * 192.96564 * 17 15 14 19 19 S 1.83293 * 102.56672 * 42.43418 * 18 17 15 20 20 O 1.42096 * 109.35462 * 90.18617 * 19 18 17 21 21 O 1.42098 * 109.35447 * 223.38824 * 19 18 17 22 22 C 1.54164 * 109.64962 * 178.34445 * 15 14 13 23 23 C 1.46850 * 111.19378 * 298.25626 * 14 13 12 24 24 H 0.96989 * 120.00472 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.52518 * 57.73371 * 11 9 7 26 26 H 1.08996 * 109.52903 * 297.53566 * 11 9 7 27 27 H 1.08998 * 109.50316 * 182.40311 * 12 11 9 28 28 H 1.09005 * 109.53069 * 62.30603 * 12 11 9 29 29 H 1.09002 * 109.46428 * 179.19042 * 13 12 11 30 30 H 1.08996 * 109.46745 * 299.15981 * 13 12 11 31 31 H 1.08996 * 110.03104 * 312.25633 * 17 15 14 32 32 H 1.08998 * 110.02551 * 73.67796 * 17 15 14 33 33 H 1.08997 * 110.79319 * 160.70259 * 18 17 15 34 34 H 1.09002 * 110.79281 * 283.98099 * 18 17 15 35 35 H 1.08997 * 110.31593 * 266.66357 * 22 15 14 36 36 H 1.09002 * 110.31691 * 28.85225 * 22 15 14 37 37 H 1.08999 * 109.46003 * 301.72207 * 23 14 13 38 38 H 1.08999 * 109.45967 * 181.75456 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5583 0.8902 11 6 0.3701 -2.5808 -1.2501 12 6 -0.3463 -3.9339 -1.2725 13 6 0.6932 -5.0565 -1.2407 14 7 1.5099 -4.9349 -0.0264 15 6 2.4269 -6.0747 0.1078 16 1 3.0677 -6.1349 -0.7719 17 6 1.6176 -7.3759 0.2482 18 6 2.6134 -8.4696 0.7131 19 16 3.6091 -7.5913 1.9767 20 8 3.0019 -7.7537 3.2511 21 8 4.9824 -7.9098 1.7990 22 6 3.2964 -5.8949 1.3680 23 6 2.2443 -3.6634 -0.0056 24 1 -0.4850 0.8399 0.0004 25 1 0.9910 -2.4827 -2.1407 26 1 -0.3674 -1.7785 -1.2290 27 1 -0.9422 -4.0153 -2.1816 28 1 -0.9974 -4.0160 -0.4021 29 1 0.1860 -6.0214 -1.2420 30 1 1.3347 -4.9826 -2.1187 31 1 0.8304 -7.2477 0.9911 32 1 1.1832 -7.6509 -0.7130 33 1 2.0831 -9.3128 1.1558 34 1 3.2395 -8.8004 -0.1156 35 1 4.2361 -5.4052 1.1127 36 1 2.7590 -5.3162 2.1193 37 1 2.8786 -3.5960 -0.8895 38 1 2.8636 -3.6164 0.8901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259096958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:23 Heat of formation + Delta-G solvation = -97.677739 kcal Electronic energy + Delta-G solvation = -19966.566237 eV Core-core repulsion = 16934.779179 eV Total energy + Delta-G solvation = -3031.787058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26712 -38.05769 -37.19443 -36.91573 -34.76054 -32.72688 -31.75038 -30.04842 -27.09327 -25.97941 -24.15551 -22.97621 -21.46469 -20.39477 -19.71641 -18.51158 -17.75299 -17.70891 -16.63605 -16.61051 -16.25161 -15.62351 -15.34342 -15.08497 -14.72619 -14.48646 -14.19903 -14.09894 -13.48245 -13.23899 -13.17523 -13.13917 -13.00339 -12.87207 -12.83862 -12.51896 -12.35421 -12.10706 -11.80900 -11.70582 -11.65491 -11.31691 -11.14831 -10.81116 -10.64034 -10.36190 -9.16049 -8.08407 -6.22386 -0.85618 1.40995 1.41540 1.49093 1.63923 2.41653 2.68590 2.91446 3.18790 3.20324 3.48217 3.71468 3.85521 4.04305 4.15812 4.22801 4.34100 4.45158 4.63043 4.64419 4.71571 4.76529 4.86611 4.92443 4.99852 5.03055 5.11076 5.19096 5.22723 5.43233 5.54334 5.63983 5.96459 6.12457 6.21928 6.34340 6.45462 6.91005 7.45672 8.95693 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.004886 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.072531 B = 5729.508703 C = 6426.370696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.050 3.950 10 H -0.003 1.003 11 C -0.106 4.106 12 C -0.112 4.112 13 C 0.060 3.940 14 N -0.537 5.537 15 C 0.084 3.916 16 H 0.074 0.926 17 C -0.116 4.116 18 C -0.551 4.551 19 S 2.401 3.599 20 O -0.979 6.979 21 O -0.980 6.980 22 C -0.591 4.591 23 C 0.076 3.924 24 H 0.260 0.740 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.032 0.968 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.018 0.982 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -17.134 -3.048 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.145 4.145 12 C -0.150 4.150 13 C -0.068 4.068 14 N -0.262 5.262 15 C -0.026 4.026 16 H 0.092 0.908 17 C -0.155 4.155 18 C -0.684 4.684 19 S 2.588 3.412 20 O -0.976 6.976 21 O -0.977 6.977 22 C -0.721 4.721 23 C -0.051 4.051 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.036 0.964 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.763 -17.339 -1.841 17.654 hybrid contribution 0.481 1.972 -1.050 2.285 sum 3.244 -15.367 -2.890 15.970 Atomic orbital electron populations 1.70017 1.07107 1.27075 1.51186 1.25680 0.95615 1.02184 0.94857 0.85733 0.78468 0.79426 0.78737 1.19704 1.20997 1.19839 1.21517 0.92962 0.92325 1.50814 0.93136 1.18604 0.93090 0.91308 0.93848 0.98525 1.21477 0.99089 0.96626 0.97268 1.21593 0.97666 0.94731 1.01008 1.22175 0.95086 0.99757 0.89740 1.62038 1.23792 1.01272 1.39127 1.22135 0.93007 0.92100 0.95340 0.90805 1.22370 0.97723 0.88848 1.06557 1.30408 1.12126 1.09374 1.16520 1.08544 0.75505 0.79594 0.77530 1.93562 1.78764 1.85267 1.39981 1.93547 1.33607 1.82846 1.87692 1.30673 1.09560 1.23019 1.08857 1.22062 0.95466 0.88635 0.98981 0.93107 0.95960 0.92687 0.91154 0.93048 0.87784 0.94974 0.88530 0.86010 0.81844 0.81808 0.84165 0.84538 0.96391 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.74 11.35 21.45 0.24 -52.50 16 2 C 0.02 0.86 5.30 84.65 0.45 1.31 16 3 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -29.37 8.57 25.60 0.22 -29.15 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.48 2.26 -11.49 -0.03 2.45 16 10 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 11 C -0.11 -4.89 5.02 30.67 0.15 -4.74 16 12 C -0.11 -3.92 6.09 30.65 0.19 -3.73 16 13 C 0.06 1.66 5.28 86.32 0.46 2.11 16 14 N -0.54 -16.37 4.49 -867.09 -3.89 -20.26 16 15 C 0.08 1.79 2.35 45.61 0.11 1.90 16 16 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 17 C -0.12 -1.64 5.18 31.59 0.16 -1.47 16 18 C -0.55 -5.71 7.31 72.68 0.53 -5.18 16 19 S 2.40 47.69 6.11 -56.49 -0.34 47.35 16 20 O -0.98 -27.41 18.14 -127.49 -2.31 -29.72 16 21 O -0.98 -25.87 18.15 -127.49 -2.31 -28.19 16 22 C -0.59 -13.05 5.32 72.38 0.39 -12.67 16 23 C 0.08 2.97 4.42 86.33 0.38 3.36 16 24 H 0.26 14.33 8.31 -92.72 -0.77 13.56 16 25 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 2.92 6.15 -2.39 -0.01 2.90 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.10 2.08 6.42 -2.39 -0.02 2.06 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.12 1.19 7.13 -2.39 -0.02 1.17 16 33 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.14 2.92 8.10 -2.39 -0.02 2.90 16 36 H 0.14 3.48 7.62 -2.39 -0.02 3.46 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 2.46 6.42 -2.39 -0.02 2.45 16 Total: -1.00 -73.82 305.51 -2.56 -76.37 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.03 Total: 7.25 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 3.01 Total: -45.82 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -3.65 Total: -72.76 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -4.63 Total: -57.91 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 47.69 SS G_CDS: -0.34 Total: 47.35 kcal Total: -73.82 -2.56 -76.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.303 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds