Wall clock time and date at job start Mon Mar 30 2020 01:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48505 * 109.46773 * 269.99393 * 3 2 1 5 5 H 1.48494 * 109.47353 * 29.99650 * 3 2 1 6 6 H 1.48495 * 109.46956 * 150.00123 * 3 2 1 7 7 C 1.37879 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99477 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00295 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.53026 * 59.90128 * 9 7 2 11 11 C 1.53099 * 109.48672 * 299.81192 * 9 7 2 12 12 C 1.53126 * 109.15071 * 182.39686 * 11 9 7 13 13 C 1.53039 * 109.28009 * 57.65227 * 12 11 9 14 14 N 1.46854 * 109.52227 * 300.82107 * 13 12 11 15 15 C 1.46898 * 110.99958 * 185.83752 * 14 13 12 16 16 H 1.09004 * 110.01294 * 289.41112 * 15 14 13 17 17 C 1.53882 * 110.02810 * 50.78625 * 15 14 13 18 18 C 1.54162 * 108.70289 * 166.47100 * 17 15 14 19 19 S 1.82915 * 105.08994 * 332.09411 * 18 17 15 20 20 O 1.42090 * 109.35365 * 115.52341 * 19 18 17 21 21 O 1.42102 * 109.35255 * 248.72768 * 19 18 17 22 22 C 1.55042 * 110.02739 * 167.97794 * 15 14 13 23 23 C 1.46847 * 111.19790 * 61.74204 * 14 13 12 24 24 H 0.97000 * 120.00025 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.52931 * 62.49434 * 11 9 7 26 26 H 1.09001 * 109.52470 * 302.29560 * 11 9 7 27 27 H 1.08994 * 109.50076 * 297.71308 * 12 11 9 28 28 H 1.09000 * 109.50123 * 177.59308 * 12 11 9 29 29 H 1.08993 * 109.46667 * 180.80353 * 13 12 11 30 30 H 1.09008 * 109.45973 * 60.82938 * 13 12 11 31 31 H 1.09001 * 109.64550 * 286.32788 * 17 15 14 32 32 H 1.09000 * 109.63986 * 46.61986 * 17 15 14 33 33 H 1.08998 * 110.31735 * 91.00247 * 18 17 15 34 34 H 1.09007 * 110.31723 * 213.19453 * 18 17 15 35 35 H 1.08993 * 110.79256 * 316.54454 * 22 15 14 36 36 H 1.09007 * 110.78699 * 80.00871 * 22 15 14 37 37 H 1.09002 * 109.46481 * 58.27472 * 23 14 13 38 38 H 1.08994 * 109.46283 * 178.25325 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 1 0.6224 -2.5578 -0.8869 11 6 0.3749 -2.5819 1.2544 12 6 -0.3409 -3.9354 1.2782 13 6 0.6989 -5.0577 1.2417 14 7 1.5112 -4.9347 0.0245 15 6 2.4281 -6.0740 -0.1139 16 1 3.2142 -6.0138 0.6389 17 6 1.6537 -7.3951 0.0375 18 6 2.5514 -8.5523 -0.4439 19 16 3.6672 -7.8046 -1.6855 20 8 5.0061 -7.8682 -1.2143 21 8 3.3433 -8.3089 -2.9740 22 6 3.0507 -6.0851 -1.5337 23 6 2.2450 -3.6629 0.0020 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3630 -1.7800 1.2365 26 1 0.9990 -2.4843 2.1427 27 1 -0.9946 -4.0166 0.4099 28 1 -0.9334 -4.0177 2.1895 29 1 0.1921 -6.0226 1.2442 30 1 1.3437 -4.9839 2.1175 31 1 1.3894 -7.5471 1.0840 32 1 0.7467 -7.3593 -0.5660 33 1 3.1276 -8.9557 0.3887 34 1 1.9466 -9.3354 -0.9014 35 1 2.2937 -5.8773 -2.2898 36 1 3.8726 -5.3721 -1.6013 37 1 2.8825 -3.5958 0.8837 38 1 2.8609 -3.6148 -0.8959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259096966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:27 Heat of formation + Delta-G solvation = -73.413096 kcal Electronic energy + Delta-G solvation = -19929.463587 eV Core-core repulsion = 16898.728723 eV Total energy + Delta-G solvation = -3030.734864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98858 -37.10055 -36.13748 -35.74988 -33.02468 -31.47321 -30.02374 -29.09210 -25.50940 -24.60048 -22.97118 -21.50471 -20.32379 -18.85729 -18.80100 -17.05646 -16.82036 -16.23814 -15.73436 -15.00970 -14.66555 -14.65349 -14.19904 -14.02834 -13.51275 -12.98739 -12.79987 -12.66588 -12.26047 -12.21099 -12.15222 -12.04054 -11.83854 -11.60699 -11.16437 -11.00608 -10.85780 -10.71321 -10.69083 -10.32626 -10.15753 -9.90680 -9.53864 -9.12997 -8.77904 -8.36061 -7.90370 -6.02769 -4.09182 -0.03155 2.43005 3.27932 3.35003 3.37646 3.50217 3.85697 4.10743 4.37390 4.41443 4.51760 4.68402 4.77695 4.90788 5.27674 5.36605 5.42138 5.49882 5.59036 5.66379 5.81559 5.89594 5.93817 6.13845 6.29582 6.39691 6.59554 6.65398 6.85625 7.11220 7.27810 7.47310 7.61525 7.71102 8.00224 8.10329 8.40977 8.94669 9.55693 11.03257 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.004752 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.973691 B = 5891.226739 C = 6558.292788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.117 4.117 13 C 0.055 3.945 14 N -0.521 5.521 15 C 0.083 3.917 16 H 0.061 0.939 17 C -0.112 4.112 18 C -0.591 4.591 19 S 2.387 3.613 20 O -0.942 6.942 21 O -0.942 6.942 22 C -0.573 4.573 23 C 0.064 3.936 24 H 0.260 0.740 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.023 0.977 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -14.903 1.405 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.072 4.072 14 N -0.247 5.247 15 C -0.028 4.028 16 H 0.079 0.921 17 C -0.151 4.151 18 C -0.721 4.721 19 S 2.571 3.429 20 O -0.939 6.939 21 O -0.939 6.939 22 C -0.704 4.704 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.041 0.959 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.029 -15.196 0.433 15.337 hybrid contribution 0.418 1.304 1.256 1.858 sum 2.447 -13.892 1.689 14.206 Atomic orbital electron populations 1.69885 1.05855 1.26414 1.50507 1.24925 0.94825 0.98980 0.95021 0.86623 0.79844 0.83561 0.78124 1.20669 1.21254 1.20010 1.21128 0.92831 0.90614 1.50965 0.92828 1.18665 0.92584 0.90190 0.94926 0.94651 1.21671 1.00089 0.94766 0.98505 1.21681 0.97117 0.96359 1.00373 1.22179 0.95776 0.99297 0.89986 1.62129 1.23059 1.01392 1.38081 1.22181 0.94954 0.92611 0.93041 0.92141 1.22050 0.99093 0.89540 1.04401 1.30452 1.14995 1.09000 1.17614 1.09048 0.76886 0.80110 0.76884 1.93609 1.32311 1.85882 1.82136 1.93605 1.85448 1.78096 1.36789 1.30739 1.12376 1.21491 1.05767 1.22420 0.96680 0.88003 0.99200 0.93006 0.89025 0.95099 0.91953 0.93358 0.91719 0.95539 0.89140 0.88583 0.84829 0.84466 0.83259 0.84423 0.95915 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 11.36 55.43 0.63 -24.07 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.70 8.56 -34.44 -0.29 -13.99 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.06 1.31 2.26 -91.70 -0.21 1.10 16 10 H 0.04 0.94 8.14 -51.92 -0.42 0.51 16 11 C -0.11 -2.52 5.03 -26.62 -0.13 -2.65 16 12 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 13 C 0.06 0.85 5.06 -3.83 -0.02 0.83 16 14 N -0.52 -8.38 4.54 -224.85 -1.02 -9.40 16 15 C 0.08 1.02 2.35 -66.18 -0.16 0.86 16 16 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 17 C -0.11 -1.04 4.62 -25.66 -0.12 -1.15 16 18 C -0.59 -4.47 7.26 37.76 0.27 -4.20 16 19 S 2.39 25.13 6.11 -107.50 -0.66 24.47 16 20 O -0.94 -13.07 18.14 -57.71 -1.05 -14.12 16 21 O -0.94 -12.97 18.15 -57.71 -1.05 -14.02 16 22 C -0.57 -6.48 6.06 38.24 0.23 -6.25 16 23 C 0.06 1.24 4.56 -3.84 -0.02 1.23 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.09 2.33 6.16 -51.93 -0.32 2.01 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.80 6.19 -51.93 -0.32 0.48 16 30 H 0.03 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.09 0.75 7.14 -51.93 -0.37 0.38 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.15 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.14 1.53 7.59 -51.93 -0.39 1.13 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -32.64 305.86 -10.20 -42.84 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.95 Total: -1.29 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -0.70 Total: -24.85 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: -0.39 Total: -33.46 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -2.09 Total: -28.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 25.13 SS G_CDS: -0.66 Total: 24.47 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.64 -10.20 -42.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.573 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds