Wall clock time and date at job start Mon Mar 30 2020 01:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47468 * 240.00190 * 3 2 1 5 5 H 1.48506 * 109.46888 * 120.00409 * 3 2 1 6 6 H 1.48502 * 109.47122 * 0.02562 * 3 2 1 7 7 C 1.37877 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99912 * 175.30755 * 7 2 1 9 9 C 1.50705 * 119.99775 * 355.30479 * 7 2 1 10 10 H 1.08994 * 109.50292 * 35.41386 * 9 7 2 11 11 C 1.53119 * 109.50281 * 275.33122 * 9 7 2 12 12 C 1.53117 * 109.15777 * 182.40555 * 11 9 7 13 13 C 1.53035 * 109.27878 * 57.65586 * 12 11 9 14 14 N 1.46844 * 109.52595 * 300.81687 * 13 12 11 15 15 C 1.46897 * 111.00542 * 185.84018 * 14 13 12 16 16 H 1.09007 * 110.01110 * 302.35264 * 15 14 13 17 17 C 1.53872 * 110.03127 * 180.91990 * 15 14 13 18 18 C 1.54158 * 108.70566 * 193.52504 * 17 15 14 19 19 S 1.82919 * 105.08665 * 27.91297 * 18 17 15 20 20 O 1.42097 * 109.35183 * 244.47485 * 19 18 17 21 21 O 1.42104 * 109.47677 * 111.30659 * 19 18 17 22 22 C 1.55040 * 110.02759 * 63.72791 * 15 14 13 23 23 C 1.46856 * 111.22855 * 61.72205 * 14 13 12 24 24 H 0.97006 * 120.00063 * 185.35597 * 1 2 3 25 25 H 1.09004 * 109.52231 * 302.30979 * 11 9 7 26 26 H 1.08994 * 109.52259 * 62.43532 * 11 9 7 27 27 H 1.09005 * 109.50065 * 177.59490 * 12 11 9 28 28 H 1.09001 * 109.50445 * 297.71104 * 12 11 9 29 29 H 1.09000 * 109.46675 * 60.83791 * 13 12 11 30 30 H 1.09008 * 109.46363 * 180.81657 * 13 12 11 31 31 H 1.08995 * 109.64698 * 313.38718 * 17 15 14 32 32 H 1.09001 * 109.64463 * 73.67636 * 17 15 14 33 33 H 1.08998 * 110.32675 * 269.00780 * 18 17 15 34 34 H 1.09002 * 110.31868 * 146.80957 * 18 17 15 35 35 H 1.09003 * 110.79261 * 279.99967 * 22 15 14 36 36 H 1.09002 * 110.79470 * 43.26534 * 22 15 14 37 37 H 1.09002 * 109.49236 * 178.28116 * 23 14 13 38 38 H 1.08997 * 109.43001 * 58.31699 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 3.1029 1.6963 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0818 -1.1955 -0.0771 9 6 1.2547 -2.4970 0.1057 10 1 0.3076 -2.4164 -0.4275 11 6 0.9863 -2.8137 1.5796 12 6 0.2779 -4.1672 1.6818 13 6 1.1449 -5.2423 1.0226 14 7 1.3723 -4.8940 -0.3857 15 6 2.0841 -5.9712 -1.0863 16 1 3.0326 -6.1762 -0.5897 17 6 2.3307 -5.5737 -2.5522 18 6 2.7604 -6.8278 -3.3389 19 16 1.9847 -8.2311 -2.4586 20 8 2.9991 -9.0627 -1.9120 21 8 0.9677 -8.7978 -3.2734 22 6 1.2120 -7.2528 -1.1150 23 6 2.0930 -3.6203 -0.5087 24 1 -0.4850 -0.8364 0.0784 25 1 1.9314 -2.8553 2.1212 26 1 0.3539 -2.0371 2.0097 27 1 0.1223 -4.4182 2.7311 28 1 -0.6847 -4.1136 1.1733 29 1 2.1020 -5.3051 1.5403 30 1 0.6367 -6.2049 1.0808 31 1 1.4144 -5.1680 -2.9810 32 1 3.1192 -4.8227 -2.6005 33 1 3.8457 -6.9279 -3.3286 34 1 2.3941 -6.7754 -4.3642 35 1 1.2734 -7.7839 -0.1651 36 1 0.1766 -7.0110 -1.3548 37 1 2.2732 -3.4046 -1.5619 38 1 3.0460 -3.6908 0.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259096969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:28 Heat of formation + Delta-G solvation = -103.842265 kcal Electronic energy + Delta-G solvation = -19948.060244 eV Core-core repulsion = 16916.005872 eV Total energy + Delta-G solvation = -3032.054372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38394 -38.09499 -37.32769 -37.00567 -35.02638 -32.69561 -31.76377 -30.14794 -26.74177 -25.84484 -24.61539 -23.06903 -21.58338 -20.67351 -19.76991 -18.84726 -17.88932 -17.70349 -16.70085 -16.36383 -16.01447 -15.63354 -15.57933 -15.21025 -15.10554 -14.49752 -14.29354 -14.23440 -13.62463 -13.49197 -13.26244 -13.17251 -13.02711 -12.96064 -12.65964 -12.48059 -12.08941 -12.00207 -11.97564 -11.89012 -11.63400 -11.41509 -11.20140 -10.99996 -10.44355 -10.35852 -9.28226 -8.55817 -6.27410 -0.90480 1.54379 1.57360 1.61300 1.80143 2.58232 2.62818 2.83945 3.11733 3.24586 3.42488 3.66739 3.77113 3.97307 4.01079 4.06565 4.16107 4.30467 4.46582 4.49373 4.64895 4.70837 4.75020 4.80843 4.85212 4.93937 4.98709 5.03480 5.09945 5.22346 5.24078 5.57608 5.76849 5.94887 6.18382 6.25865 6.31272 6.71491 7.53255 8.83432 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032322 B = 0.004553 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.069671 B = 6148.755805 C = 6610.957466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.028 4.028 3 Si 1.108 2.892 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.605 4.605 8 H 0.044 0.956 9 C 0.030 3.970 10 H 0.007 0.993 11 C -0.104 4.104 12 C -0.113 4.113 13 C 0.059 3.941 14 N -0.532 5.532 15 C 0.077 3.923 16 H 0.073 0.927 17 C -0.117 4.117 18 C -0.566 4.566 19 S 2.410 3.590 20 O -0.974 6.974 21 O -0.976 6.976 22 C -0.573 4.573 23 C 0.080 3.920 24 H 0.259 0.741 25 H 0.039 0.961 26 H 0.020 0.980 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.070 0.930 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -14.132 -3.023 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.226 4.226 3 Si 0.931 3.069 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.644 4.644 8 H 0.062 0.938 9 C 0.011 3.989 10 H 0.026 0.974 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.069 4.069 14 N -0.258 5.258 15 C -0.033 4.033 16 H 0.090 0.910 17 C -0.156 4.156 18 C -0.698 4.698 19 S 2.597 3.403 20 O -0.971 6.971 21 O -0.973 6.973 22 C -0.704 4.704 23 C -0.047 4.047 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.174 0.826 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.089 0.911 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.446 -13.470 -3.513 14.613 hybrid contribution 0.690 -0.551 0.808 1.197 sum 5.136 -14.021 -2.705 15.176 Atomic orbital electron populations 1.70898 1.07866 1.30475 1.48491 1.27078 0.96536 1.06059 0.92942 0.83040 0.74199 0.71905 0.77757 1.19567 1.19935 1.21370 1.22287 0.94410 0.93243 1.54438 0.93799 1.18837 0.95131 0.92760 0.92179 0.97432 1.21621 0.98074 0.95528 0.99047 1.21601 0.98751 0.94497 1.00186 1.22143 0.98685 0.98989 0.87064 1.62004 1.48079 1.01820 1.13847 1.22343 0.95150 0.90091 0.95738 0.90964 1.22033 1.04566 0.97102 0.91880 1.30316 1.14330 1.12551 1.12607 1.08250 0.75765 0.78136 0.78128 1.93566 1.58615 1.65854 1.79034 1.93564 1.58855 1.77222 1.67650 1.30745 1.12107 1.08797 1.18743 1.22025 0.94204 0.88159 1.00310 0.93055 0.94257 0.96122 0.90596 0.92713 0.94867 0.88358 0.88940 0.88782 0.82624 0.82304 0.83080 0.82904 0.91119 0.96310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 13.62 21.45 0.29 -56.07 16 2 C -0.03 -1.54 5.45 84.66 0.46 -1.08 16 3 Si 1.11 49.00 29.91 68.60 2.05 51.05 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.61 -32.49 8.32 25.60 0.21 -32.27 16 8 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 9 C 0.03 1.43 1.98 -11.49 -0.02 1.40 16 10 H 0.01 0.40 6.69 -2.39 -0.02 0.39 16 11 C -0.10 -4.51 5.27 30.67 0.16 -4.35 16 12 C -0.11 -3.75 6.09 30.65 0.19 -3.56 16 13 C 0.06 1.64 5.32 86.33 0.46 2.10 16 14 N -0.53 -15.95 4.54 -865.30 -3.93 -19.88 16 15 C 0.08 1.67 2.34 45.91 0.11 1.78 16 16 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 17 C -0.12 -2.24 4.81 31.28 0.15 -2.08 16 18 C -0.57 -7.58 7.26 72.37 0.53 -7.06 16 19 S 2.41 43.15 6.10 -56.49 -0.34 42.81 16 20 O -0.97 -23.72 18.15 -127.47 -2.31 -26.04 16 21 O -0.98 -24.50 18.15 -127.47 -2.31 -26.82 16 22 C -0.57 -9.82 5.89 72.68 0.43 -9.40 16 23 C 0.08 3.03 4.41 86.32 0.38 3.41 16 24 H 0.26 15.72 6.67 -92.70 -0.62 15.10 16 25 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 2.15 6.69 -2.38 -0.02 2.14 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.86 7.12 -2.39 -0.02 1.84 16 33 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.15 2.07 7.56 -2.39 -0.02 2.05 16 36 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.07 2.61 6.25 -2.39 -0.01 2.60 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -73.35 307.27 -2.32 -75.67 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.18 Total: 10.39 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 3.05 Total: -51.11 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -3.63 Total: -75.95 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -4.63 Total: -52.85 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.05 kcal Atomic # 16 Polarization: 43.15 SS G_CDS: -0.34 Total: 42.81 kcal Total: -73.35 -2.32 -75.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.174 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds