Wall clock time and date at job start Mon Mar 30 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46962 * 2 1 4 4 C 1.47193 * 109.47354 * 240.00131 * 2 1 3 5 5 N 2.60798 * 109.47598 * 239.99963 * 2 1 3 6 6 C 1.50696 * 109.46994 * 119.99743 * 2 1 3 7 7 O 1.20823 * 120.00135 * 120.00383 * 6 2 1 8 8 O 1.34235 * 119.99963 * 300.00217 * 6 2 1 9 9 C 1.45200 * 116.99794 * 179.97438 * 8 6 2 10 10 C 1.50701 * 109.47044 * 180.02562 * 9 8 6 11 11 C 1.38633 * 119.74785 * 269.73062 * 10 9 8 12 12 C 1.37616 * 120.24971 * 179.72226 * 11 10 9 13 13 C 1.40726 * 119.74353 * 0.56653 * 12 11 10 14 14 C 1.41392 * 120.24573 * 179.68153 * 13 12 11 15 15 H 1.07998 * 120.00120 * 204.40682 * 14 13 12 16 16 C 1.39945 * 119.99829 * 24.40979 * 14 13 12 17 17 N 1.30824 * 120.00405 * 17.84574 * 16 14 13 18 18 Si 1.86797 * 119.99936 * 197.84402 * 16 14 13 19 19 H 1.48498 * 109.47062 * 59.99965 * 18 16 14 20 20 H 1.48505 * 109.47337 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47130 * 299.99991 * 18 16 14 22 22 C 1.40715 * 119.50640 * 359.70704 * 13 12 11 23 23 C 1.37616 * 119.75074 * 359.97438 * 22 13 12 24 24 H 1.08994 * 109.47544 * 300.00384 * 1 2 3 25 25 H 1.09009 * 109.47124 * 60.00619 * 1 2 3 26 26 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47178 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46971 * 299.99965 * 3 2 1 29 29 H 1.09004 * 109.46874 * 59.99201 * 3 2 1 30 30 H 1.09004 * 109.47012 * 300.00047 * 9 8 6 31 31 H 1.09003 * 109.47353 * 60.00225 * 9 8 6 32 32 H 1.07996 * 119.87768 * 359.97438 * 11 10 9 33 33 H 1.08002 * 120.13552 * 180.27593 * 12 11 10 34 34 H 0.97002 * 120.00394 * 180.02562 * 17 16 14 35 35 H 1.08003 * 120.12445 * 179.97438 * 22 13 12 36 36 H 1.07993 * 119.88115 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6938 -1.2018 5 7 2.3995 -1.2294 -2.1293 6 6 2.0323 -0.7103 1.2305 7 8 2.7270 -1.6927 1.1197 8 8 1.7079 -0.2517 2.4496 9 6 2.2266 -0.9862 3.5897 10 6 1.7616 -0.3296 4.8640 11 6 2.5350 0.6610 5.4492 12 6 2.1175 1.2714 6.6098 13 6 0.9064 0.8781 7.2089 14 6 0.4706 1.4935 8.4050 15 1 -0.2026 0.9698 9.0675 16 6 0.9116 2.7812 8.7303 17 7 1.4263 3.5496 7.8050 18 14 0.7655 3.4028 10.4857 19 1 1.5427 2.5181 11.3904 20 1 1.3000 4.7859 10.5673 21 1 -0.6620 3.3984 10.8952 22 6 0.1325 -0.1325 6.6090 23 6 0.5663 -0.7245 5.4449 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.8624 -2.0131 3.5566 31 1 3.3162 -0.9859 3.5570 32 1 3.4665 0.9577 4.9905 33 1 2.7192 2.0461 7.0617 34 1 1.7323 4.4420 8.0306 35 1 -0.7984 -0.4424 7.0604 36 1 -0.0257 -1.5006 4.9829 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271807994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:07 Heat of formation + Delta-G solvation = -65.776130 kcal Electronic energy + Delta-G solvation = -19770.156213 eV Core-core repulsion = 16604.308562 eV Total energy + Delta-G solvation = -3165.847652 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88606 -39.54002 -38.47710 -37.41075 -35.80356 -35.51709 -32.51204 -31.17476 -28.97583 -28.39419 -26.07489 -25.15717 -23.01168 -22.86555 -21.77424 -19.25194 -19.19691 -18.44715 -17.51620 -17.17837 -16.84511 -16.02140 -15.65491 -15.60953 -15.11209 -14.72891 -14.62702 -14.13155 -14.00181 -13.97313 -13.80306 -13.49655 -13.32357 -13.26524 -12.98883 -12.82704 -12.72591 -12.62682 -12.54937 -12.28952 -12.08321 -11.70397 -11.58891 -11.37183 -11.23610 -10.99944 -9.38652 -9.28295 -8.65384 -6.35744 0.67878 0.99356 1.15568 1.20240 1.41696 1.51656 1.52872 1.55169 2.07055 2.22060 2.52298 2.75147 3.53802 3.64722 3.74328 3.81754 4.11691 4.15579 4.50846 4.54226 4.60993 4.68886 4.73099 4.77857 4.84121 5.06512 5.15700 5.20405 5.25201 5.35039 5.39635 5.44922 5.69972 5.93228 6.10180 6.19465 6.25956 6.37071 6.58941 6.69106 6.92837 7.01814 8.30652 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036258 B = 0.003483 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.062224 B = 8037.166396 C = 8279.703160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 C -0.142 4.142 4 C 0.242 3.758 5 N -0.449 5.449 6 C 0.473 3.527 7 O -0.540 6.540 8 O -0.337 6.337 9 C 0.139 3.861 10 C -0.228 4.228 11 C -0.078 4.078 12 C -0.194 4.194 13 C 0.089 3.911 14 C -0.494 4.494 15 H 0.078 0.922 16 C 0.038 3.962 17 N -0.815 5.815 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.245 4.245 23 C -0.062 4.062 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.290 0.710 35 H 0.101 0.899 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 0.264 -8.927 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.049 3.951 3 C -0.200 4.200 4 C -0.077 4.077 5 N -0.124 5.124 6 C 0.315 3.685 7 O -0.431 6.431 8 O -0.253 6.253 9 C 0.067 3.933 10 C -0.229 4.229 11 C -0.096 4.096 12 C -0.214 4.214 13 C 0.086 3.914 14 C -0.523 4.523 15 H 0.096 0.904 16 C -0.179 4.179 17 N -0.440 5.440 18 Si 0.801 3.199 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.265 4.265 23 C -0.080 4.080 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.159 -0.605 -10.369 10.451 hybrid contribution 0.134 0.221 1.215 1.242 sum -1.025 -0.384 -9.154 9.219 Atomic orbital electron populations 1.22047 0.86006 1.04752 1.07097 1.18108 1.00651 0.96128 0.80191 1.22046 1.02288 0.88575 1.07069 1.28481 0.92563 0.92704 0.93918 1.81186 1.09040 1.08762 1.13385 1.23479 0.76958 0.82136 0.85912 1.90695 1.37094 1.27385 1.87903 1.86653 1.68951 1.55599 1.14066 1.21665 0.97941 0.93873 0.79801 1.18926 1.00054 1.05866 0.98095 1.20776 0.98499 0.94892 0.95437 1.21262 0.97734 1.03505 0.98861 1.18027 0.90654 0.90599 0.92074 1.19906 1.26462 1.00412 1.05524 0.90367 1.26749 0.91972 0.96261 1.02900 1.69854 1.29716 1.08587 1.35832 0.85271 0.79908 0.77761 0.76934 1.18654 1.19155 1.18328 1.21166 1.01067 1.04736 0.99499 1.20712 0.94571 0.97950 0.94798 0.87826 0.87264 0.91411 0.91602 0.87209 0.87933 0.90662 0.91179 0.87405 0.87901 0.89874 0.88086 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.36 71.98 0.60 -1.32 16 2 C 0.05 1.04 0.89 -54.73 -0.05 0.99 16 3 C -0.14 -2.02 8.36 71.98 0.60 -1.42 16 4 C 0.24 5.86 13.10 89.44 1.17 7.04 16 5 N -0.45 -13.07 18.54 20.00 0.37 -12.70 16 6 C 0.47 12.90 6.54 71.23 0.47 13.36 16 7 O -0.54 -18.31 15.78 21.97 0.35 -17.97 16 8 O -0.34 -10.03 10.01 -51.47 -0.52 -10.55 16 9 C 0.14 4.55 5.58 71.24 0.40 4.95 16 10 C -0.23 -9.00 5.54 -19.67 -0.11 -9.11 16 11 C -0.08 -3.36 9.67 22.22 0.21 -3.14 16 12 C -0.19 -9.67 8.70 22.73 0.20 -9.48 16 13 C 0.09 4.56 5.58 -21.29 -0.12 4.45 16 14 C -0.49 -25.38 9.05 23.46 0.21 -25.17 16 15 H 0.08 3.86 7.91 -2.91 -0.02 3.84 16 16 C 0.04 1.80 5.14 85.26 0.44 2.24 16 17 N -0.81 -40.34 10.95 21.83 0.24 -40.10 16 18 Si 0.98 36.14 29.59 68.60 2.03 38.17 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 20 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 22 C -0.25 -11.29 9.80 22.73 0.22 -11.07 16 23 C -0.06 -2.51 9.67 22.22 0.21 -2.29 16 24 H 0.10 1.36 8.11 -2.39 -0.02 1.34 16 25 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.45 8.11 -2.38 -0.02 1.43 16 30 H 0.08 2.31 8.07 -2.38 -0.02 2.29 16 31 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 32 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.10 5.38 6.16 -2.91 -0.02 5.36 16 34 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 35 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -62.18 323.63 8.02 -54.16 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.09 Total: 18.96 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 4.46 Total: -29.97 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.61 Total: -52.80 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.17 Total: -28.52 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Total: -62.18 8.02 -54.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271807994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.612 kcal (2) G-P(sol) polarization free energy of solvation -62.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds