Wall clock time and date at job start Mon Mar 30 2020 01:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86804 * 119.99824 * 2 1 4 4 H 1.48499 * 109.46983 * 239.99930 * 3 2 1 5 5 H 1.48503 * 109.46922 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46944 * 119.99942 * 3 2 1 7 7 C 1.40228 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99350 * 190.62387 * 7 2 1 9 9 C 1.41101 * 120.00180 * 10.62175 * 7 2 1 10 10 C 1.40894 * 120.10005 * 209.40716 * 9 7 2 11 11 C 1.36326 * 119.88625 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.10990 * 0.02562 * 11 10 9 13 13 C 1.47640 * 119.89348 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99874 * 227.13037 * 13 12 11 15 15 N 1.34781 * 120.00153 * 47.14120 * 13 12 11 16 16 C 1.46853 * 120.37687 * 355.45917 * 15 13 12 17 17 C 1.53891 * 108.50871 * 122.35053 * 16 15 13 18 18 C 1.51299 * 108.37313 * 49.64465 * 17 16 15 19 19 O 1.20753 * 120.80768 * 126.88753 * 18 17 16 20 20 C 1.51292 * 118.38245 * 306.90659 * 18 17 16 21 21 C 1.46857 * 120.38143 * 175.74127 * 15 13 12 22 22 C 1.40014 * 120.20768 * 359.97438 * 12 11 10 23 23 C 1.36310 * 120.10852 * 359.97438 * 22 12 11 24 24 H 0.97002 * 120.00582 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05387 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.94002 * 179.72096 * 11 10 9 27 27 H 1.08997 * 109.58924 * 242.16709 * 16 15 13 28 28 H 1.09000 * 109.59116 * 2.59850 * 16 15 13 29 29 H 1.08996 * 109.81414 * 289.85720 * 17 16 15 30 30 H 1.09000 * 109.61856 * 169.31411 * 17 16 15 31 31 H 1.08999 * 109.67814 * 293.22531 * 20 18 17 32 32 H 1.09002 * 109.67461 * 172.69246 * 20 18 17 33 33 H 1.08997 * 109.58697 * 357.40324 * 21 15 13 34 34 H 1.08999 * 109.58792 * 117.69204 * 21 15 13 35 35 H 1.08000 * 119.94196 * 180.02562 * 22 12 11 36 36 H 1.08003 * 120.05165 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6965 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0738 -1.2224 0.1719 9 6 1.3203 -2.4258 -0.2263 10 6 1.7923 -3.6234 0.3465 11 6 1.1252 -4.7915 0.1251 12 6 -0.0269 -4.8024 -0.6704 13 6 -0.7454 -6.0702 -0.9076 14 8 -1.0876 -6.3735 -2.0342 15 7 -1.0222 -6.8912 0.1248 16 6 -0.5273 -6.5825 1.4725 17 6 -1.7317 -6.4892 2.4258 18 6 -2.5930 -7.7172 2.2277 19 8 -2.9083 -8.4094 3.1656 20 6 -3.0493 -8.0570 0.8258 21 6 -1.8170 -8.1080 -0.0863 22 6 -0.4998 -3.6148 -1.2418 23 6 0.1599 -2.4418 -1.0252 24 1 -0.4851 0.8400 -0.0004 25 1 2.6816 -3.6161 0.9592 26 1 1.4888 -5.7107 0.5600 27 1 0.1450 -7.3734 1.8050 28 1 0.0039 -5.6308 1.4577 29 1 -2.3118 -5.5940 2.2017 30 1 -1.3803 -6.4499 3.4569 31 1 -3.7388 -7.2921 0.4687 32 1 -3.5456 -9.0275 0.8266 33 1 -2.1349 -8.1606 -1.1275 34 1 -1.2157 -8.9840 0.1570 35 1 -1.3891 -3.6280 -1.8543 36 1 -0.2058 -1.5261 -1.4660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272284455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:31 Heat of formation + Delta-G solvation = -51.698063 kcal Electronic energy + Delta-G solvation = -20497.972803 eV Core-core repulsion = 17332.735622 eV Total energy + Delta-G solvation = -3165.237181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28574 -38.97117 -37.28819 -35.92091 -33.94942 -31.86161 -30.93335 -30.04176 -29.51491 -26.15795 -24.18342 -23.77165 -21.63826 -21.12122 -19.98774 -18.51516 -17.60019 -16.81083 -16.01206 -15.50972 -15.48108 -15.06093 -15.00389 -14.68695 -14.26365 -13.92424 -13.55851 -13.00622 -12.74724 -12.54751 -12.30257 -12.08943 -12.01125 -11.84569 -11.53182 -11.43480 -11.30517 -11.19051 -11.01063 -10.62554 -10.10094 -9.63444 -9.54465 -9.40681 -9.08654 -8.52380 -7.76153 -7.52394 -6.97278 -4.63657 1.84846 2.26203 2.87297 2.94520 2.96080 2.98370 3.22386 3.55910 3.76241 4.04599 4.44937 4.74169 4.80210 4.84389 5.06914 5.27578 5.40537 5.47225 5.50583 5.66993 5.79276 5.85801 5.90728 5.97602 6.02553 6.16835 6.69399 6.78696 6.82159 6.95937 7.05350 7.37532 7.38778 7.50264 7.65490 7.81647 7.89866 8.03994 8.39396 8.62125 8.69857 8.76658 9.94963 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029538 B = 0.004356 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.688150 B = 6426.913960 C = 6790.239264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.126 3.874 10 C -0.227 4.227 11 C -0.063 4.063 12 C -0.272 4.272 13 C 0.582 3.418 14 O -0.558 6.558 15 N -0.623 5.623 16 C 0.101 3.899 17 C -0.185 4.185 18 C 0.364 3.636 19 O -0.465 6.465 20 C -0.184 4.184 21 C 0.119 3.881 22 C -0.047 4.047 23 C -0.168 4.168 24 H 0.286 0.714 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -6.844 3.153 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.100 0.900 9 C 0.123 3.877 10 C -0.247 4.247 11 C -0.082 4.082 12 C -0.276 4.276 13 C 0.376 3.624 14 O -0.437 6.437 15 N -0.357 5.357 16 C -0.022 4.022 17 C -0.224 4.224 18 C 0.240 3.760 19 O -0.339 6.339 20 C -0.223 4.223 21 C -0.005 4.005 22 C -0.066 4.066 23 C -0.187 4.187 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.661 -7.204 3.048 8.263 hybrid contribution 0.240 0.800 0.134 0.846 sum -2.420 -6.404 3.182 7.550 Atomic orbital electron populations 1.69690 1.07719 1.29934 1.33421 1.26037 0.94888 1.01669 0.92050 0.86243 0.80066 0.79613 0.80188 1.18608 1.20115 1.18774 1.19745 0.96198 0.90500 1.41353 0.89954 1.17764 0.90911 0.92106 0.86904 1.20755 1.03425 0.93342 1.07135 1.20373 0.94695 0.96823 0.96308 1.18823 1.02684 0.92092 1.14011 1.18838 0.77263 0.83145 0.83170 1.90662 1.55230 1.75174 1.22668 1.48105 1.54453 1.24185 1.08945 1.22271 0.94616 1.04906 0.80441 1.22821 0.98711 0.98542 1.02318 1.24847 0.76556 0.84591 0.89957 1.90389 1.48856 1.49615 1.44996 1.22719 1.00078 1.04595 0.94904 1.21397 0.90555 0.87426 1.01081 1.20357 0.97912 0.91787 0.96566 1.21046 0.99019 0.96655 1.01988 0.90306 0.88307 0.88524 0.91407 0.85429 0.87602 0.88424 0.87959 0.88616 0.87931 0.91491 0.88796 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.61 10.86 55.56 0.60 -18.01 16 2 C 0.07 1.68 5.25 -17.31 -0.09 1.59 16 3 Si 0.92 17.15 29.57 -169.99 -5.03 12.13 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 7 C -0.45 -10.85 9.05 -37.75 -0.34 -11.19 16 8 H 0.08 1.89 7.87 -52.48 -0.41 1.47 16 9 C 0.13 3.06 5.55 -106.80 -0.59 2.47 16 10 C -0.23 -4.94 9.73 -39.27 -0.38 -5.32 16 11 C -0.06 -1.25 7.22 -39.61 -0.29 -1.54 16 12 C -0.27 -5.73 5.20 -104.73 -0.54 -6.28 16 13 C 0.58 11.41 7.25 -12.42 -0.09 11.32 16 14 O -0.56 -12.47 16.39 5.29 0.09 -12.38 16 15 N -0.62 -9.57 2.90 -173.51 -0.50 -10.07 16 16 C 0.10 1.34 5.41 -3.39 -0.02 1.32 16 17 C -0.19 -2.24 6.36 -27.13 -0.17 -2.41 16 18 C 0.36 4.65 6.68 -28.45 -0.19 4.46 16 19 O -0.46 -7.17 17.89 6.00 0.11 -7.07 16 20 C -0.18 -2.06 6.34 -27.39 -0.17 -2.23 16 21 C 0.12 1.50 6.44 -3.64 -0.02 1.48 16 22 C -0.05 -1.07 9.63 -39.61 -0.38 -1.45 16 23 C -0.17 -4.07 8.59 -39.27 -0.34 -4.40 16 24 H 0.29 6.18 8.29 -40.82 -0.34 5.85 16 25 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 26 H 0.10 1.62 6.64 -52.49 -0.35 1.28 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.13 1.90 4.00 -51.93 -0.21 1.70 16 29 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.40 6.97 -51.93 -0.36 1.03 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.12 3.07 6.25 -52.48 -0.33 2.75 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -28.02 302.61 -7.97 -35.99 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.18 Total: 7.01 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.62 Total: -12.17 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.10 Total: -28.08 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.19 Total: -19.45 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.02 -7.97 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272284455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.706 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds