Wall clock time and date at job start Mon Mar 30 2020 01:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86804 * 119.99824 * 2 1 4 4 H 1.48499 * 109.46983 * 239.99930 * 3 2 1 5 5 H 1.48503 * 109.46922 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46944 * 119.99942 * 3 2 1 7 7 C 1.40228 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99350 * 190.62387 * 7 2 1 9 9 C 1.41101 * 120.00180 * 10.62175 * 7 2 1 10 10 C 1.40894 * 120.10005 * 209.40716 * 9 7 2 11 11 C 1.36326 * 119.88625 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.10990 * 0.02562 * 11 10 9 13 13 C 1.47640 * 119.89348 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99874 * 227.13037 * 13 12 11 15 15 N 1.34781 * 120.00153 * 47.14120 * 13 12 11 16 16 C 1.46853 * 120.37687 * 355.45917 * 15 13 12 17 17 C 1.53891 * 108.50871 * 122.35053 * 16 15 13 18 18 C 1.51299 * 108.37313 * 49.64465 * 17 16 15 19 19 O 1.20753 * 120.80768 * 126.88753 * 18 17 16 20 20 C 1.51292 * 118.38245 * 306.90659 * 18 17 16 21 21 C 1.46857 * 120.38143 * 175.74127 * 15 13 12 22 22 C 1.40014 * 120.20768 * 359.97438 * 12 11 10 23 23 C 1.36310 * 120.10852 * 359.97438 * 22 12 11 24 24 H 0.97002 * 120.00582 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05387 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.94002 * 179.72096 * 11 10 9 27 27 H 1.08997 * 109.58924 * 242.16709 * 16 15 13 28 28 H 1.09000 * 109.59116 * 2.59850 * 16 15 13 29 29 H 1.08996 * 109.81414 * 289.85720 * 17 16 15 30 30 H 1.09000 * 109.61856 * 169.31411 * 17 16 15 31 31 H 1.08999 * 109.67814 * 293.22531 * 20 18 17 32 32 H 1.09002 * 109.67461 * 172.69246 * 20 18 17 33 33 H 1.08997 * 109.58697 * 357.40324 * 21 15 13 34 34 H 1.08999 * 109.58792 * 117.69204 * 21 15 13 35 35 H 1.08000 * 119.94196 * 180.02562 * 22 12 11 36 36 H 1.08003 * 120.05165 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6965 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0738 -1.2224 0.1719 9 6 1.3203 -2.4258 -0.2263 10 6 1.7923 -3.6234 0.3465 11 6 1.1252 -4.7915 0.1251 12 6 -0.0269 -4.8024 -0.6704 13 6 -0.7454 -6.0702 -0.9076 14 8 -1.0876 -6.3735 -2.0342 15 7 -1.0222 -6.8912 0.1248 16 6 -0.5273 -6.5825 1.4725 17 6 -1.7317 -6.4892 2.4258 18 6 -2.5930 -7.7172 2.2277 19 8 -2.9083 -8.4094 3.1656 20 6 -3.0493 -8.0570 0.8258 21 6 -1.8170 -8.1080 -0.0863 22 6 -0.4998 -3.6148 -1.2418 23 6 0.1599 -2.4418 -1.0252 24 1 -0.4851 0.8400 -0.0004 25 1 2.6816 -3.6161 0.9592 26 1 1.4888 -5.7107 0.5600 27 1 0.1450 -7.3734 1.8050 28 1 0.0039 -5.6308 1.4577 29 1 -2.3118 -5.5940 2.2017 30 1 -1.3803 -6.4499 3.4569 31 1 -3.7388 -7.2921 0.4687 32 1 -3.5456 -9.0275 0.8266 33 1 -2.1349 -8.1606 -1.1275 34 1 -1.2157 -8.9840 0.1570 35 1 -1.3891 -3.6280 -1.8543 36 1 -0.2058 -1.5261 -1.4660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272284455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:31 Heat of formation + Delta-G solvation = -66.713725 kcal Electronic energy + Delta-G solvation = -20498.623931 eV Core-core repulsion = 17332.735622 eV Total energy + Delta-G solvation = -3165.888309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55592 -40.28814 -38.94225 -37.25537 -35.65031 -33.06121 -32.12293 -31.73361 -31.12590 -27.81025 -25.47516 -24.87943 -23.19272 -22.80314 -21.30085 -19.76493 -19.33213 -18.23358 -17.36569 -17.13809 -16.52669 -16.29729 -16.18058 -15.89698 -15.69877 -15.40436 -15.08020 -14.52123 -14.18957 -14.07570 -13.76130 -13.48280 -13.31552 -13.12125 -12.97981 -12.79680 -12.65465 -12.40049 -12.36777 -12.21349 -11.74888 -11.35466 -11.11436 -10.79862 -10.49130 -9.80957 -9.49955 -9.25991 -8.67952 -6.44372 0.57015 0.82889 1.13624 1.41282 1.46712 1.52881 1.87486 2.07196 2.20053 2.73862 3.06629 3.65363 3.68224 3.80528 3.82438 4.09420 4.14752 4.30134 4.37124 4.41620 4.54083 4.70906 4.79465 4.80976 4.92864 4.96890 5.02189 5.07702 5.21814 5.30048 5.55259 5.63638 5.78792 5.98721 6.04922 6.25087 6.34249 6.43136 6.61356 6.84469 6.93196 7.25901 8.26559 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029538 B = 0.004356 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.688150 B = 6426.913960 C = 6790.239264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.483 4.483 8 H 0.086 0.914 9 C 0.099 3.901 10 C -0.235 4.235 11 C -0.049 4.049 12 C -0.272 4.272 13 C 0.582 3.418 14 O -0.592 6.592 15 N -0.613 5.613 16 C 0.099 3.901 17 C -0.182 4.182 18 C 0.371 3.629 19 O -0.490 6.490 20 C -0.176 4.176 21 C 0.117 3.883 22 C -0.058 4.058 23 C -0.189 4.189 24 H 0.291 0.709 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -8.069 4.321 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.096 3.904 10 C -0.254 4.254 11 C -0.067 4.067 12 C -0.277 4.277 13 C 0.375 3.625 14 O -0.474 6.474 15 N -0.345 5.345 16 C -0.024 4.024 17 C -0.220 4.220 18 C 0.249 3.751 19 O -0.366 6.366 20 C -0.215 4.215 21 C -0.005 4.005 22 C -0.077 4.077 23 C -0.208 4.208 24 H 0.102 0.898 25 H 0.133 0.867 26 H 0.152 0.848 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.148 -8.459 4.249 9.707 hybrid contribution 0.013 1.030 -0.203 1.050 sum -2.135 -7.429 4.046 8.724 Atomic orbital electron populations 1.69755 1.09110 1.31040 1.34190 1.26852 0.95547 1.04676 0.91087 0.85199 0.78715 0.75367 0.80211 1.18524 1.19443 1.18000 1.20024 0.96604 0.91431 1.43047 0.89547 1.18101 0.91277 0.93496 0.87497 1.20990 1.04094 0.93173 1.07177 1.20659 0.93395 0.97674 0.94983 1.19082 1.03085 0.92333 1.13170 1.18565 0.77222 0.83165 0.83569 1.90649 1.56596 1.75936 1.24187 1.48072 1.53655 1.24085 1.08735 1.22394 0.95462 1.05115 0.79387 1.22797 0.98161 0.98214 1.02854 1.25005 0.75842 0.84075 0.90149 1.90397 1.49882 1.50416 1.45876 1.22682 0.99464 1.05956 0.93364 1.21603 0.91123 0.86768 1.01051 1.20447 0.97973 0.92344 0.96929 1.20945 1.00097 0.96497 1.03271 0.89779 0.86683 0.84785 0.88485 0.86960 0.87920 0.86936 0.87656 0.86517 0.88849 0.89029 0.89016 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.90 10.86 21.87 0.24 -39.66 16 2 C 0.04 1.63 5.25 85.35 0.45 2.08 16 3 Si 0.98 35.23 29.57 68.60 2.03 37.26 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 6 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 7 C -0.48 -23.75 9.05 23.46 0.21 -23.54 16 8 H 0.09 4.01 7.87 -2.91 -0.02 3.99 16 9 C 0.10 4.92 5.55 -21.28 -0.12 4.80 16 10 C -0.24 -10.08 9.73 22.47 0.22 -9.86 16 11 C -0.05 -1.85 7.22 22.25 0.16 -1.69 16 12 C -0.27 -11.34 5.20 -19.94 -0.10 -11.44 16 13 C 0.58 22.11 7.25 86.73 0.63 22.74 16 14 O -0.59 -26.13 16.39 -3.99 -0.07 -26.20 16 15 N -0.61 -17.30 2.90 -821.13 -2.38 -19.68 16 16 C 0.10 2.30 5.41 86.61 0.47 2.77 16 17 C -0.18 -3.90 6.36 30.34 0.19 -3.70 16 18 C 0.37 8.42 6.68 29.48 0.20 8.61 16 19 O -0.49 -13.85 17.89 -1.43 -0.03 -13.88 16 20 C -0.18 -3.41 6.34 30.17 0.19 -3.22 16 21 C 0.12 2.62 6.44 86.45 0.56 3.17 16 22 C -0.06 -2.69 9.63 22.25 0.21 -2.48 16 23 C -0.19 -9.51 8.59 22.47 0.19 -9.32 16 24 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 25 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 26 H 0.13 4.04 6.64 -2.91 -0.02 4.02 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.11 3.04 4.00 -2.39 -0.01 3.03 16 29 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.35 6.97 -2.39 -0.02 2.33 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 4.20 8.06 -2.91 -0.02 4.17 16 36 H 0.10 5.50 6.25 -2.91 -0.02 5.48 16 Total: -1.00 -61.45 302.61 4.36 -57.09 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.10 Total: 26.15 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 3.46 Total: -21.08 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -2.14 Total: -59.35 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.09 Total: -40.07 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -61.45 4.36 -57.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272284455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.621 kcal (2) G-P(sol) polarization free energy of solvation -61.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds