Wall clock time and date at job start Mon Mar 30 2020 00:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47191 * 89.99978 * 3 2 1 5 5 H 1.48502 * 109.46961 * 209.99789 * 3 2 1 6 6 H 1.48499 * 109.47322 * 329.99493 * 3 2 1 7 7 C 1.39095 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00021 * 194.86738 * 7 2 1 9 9 N 1.36757 * 119.99902 * 14.86350 * 7 2 1 10 10 C 1.34773 * 119.99765 * 197.05476 * 9 7 2 11 11 O 1.21780 * 120.00212 * 4.98220 * 10 9 7 12 12 C 1.41800 * 119.99964 * 184.97607 * 10 9 7 13 13 C 1.35139 * 120.00030 * 174.29644 * 12 10 9 14 14 C 1.46948 * 119.99957 * 180.02562 * 13 12 10 15 15 C 1.40007 * 120.11324 * 359.72546 * 14 13 12 16 16 C 1.37661 * 119.87761 * 179.72060 * 15 14 13 17 17 C 1.39025 * 120.11435 * 0.55177 * 16 15 14 18 18 O 1.35746 * 119.87956 * 179.74272 * 17 16 15 19 19 C 1.39024 * 120.23868 * 359.72757 * 17 16 15 20 20 C 1.37656 * 120.11418 * 359.97438 * 19 17 16 21 21 C 1.46496 * 119.99829 * 17.05785 * 9 7 2 22 22 C 1.53000 * 117.49660 * 126.97105 * 21 9 7 23 23 C 1.52991 * 59.99921 * 252.50615 * 22 21 9 24 24 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00044 * 354.29157 * 12 10 9 26 26 H 1.07994 * 119.99960 * 0.02562 * 13 12 10 27 27 H 1.08002 * 120.06433 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.94007 * 180.25126 * 16 15 14 29 29 H 0.96704 * 114.00055 * 269.98046 * 18 17 16 30 30 H 1.07998 * 119.94627 * 179.97438 * 19 17 16 31 31 H 1.08008 * 120.05888 * 180.02562 * 20 19 17 32 32 H 1.09005 * 115.54956 * 272.67381 * 21 9 7 33 33 H 1.09001 * 117.50188 * 0.02562 * 22 21 9 34 34 H 1.08997 * 117.49822 * 145.01883 * 22 21 9 35 35 H 1.08998 * 117.50534 * 252.51030 * 23 22 21 36 36 H 1.09006 * 117.51657 * 107.47910 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 1.4001 5 1 3.5451 1.4401 -0.7000 6 1 1.4450 2.6526 -0.7001 7 6 2.0089 -1.2046 0.0005 8 1 3.0617 -1.2202 0.2405 9 7 1.3594 -2.3693 -0.3027 10 6 1.9135 -3.5541 0.0221 11 8 2.9471 -3.5871 0.6652 12 6 1.2929 -4.7624 -0.3850 13 6 1.9058 -5.9457 -0.1606 14 6 1.2629 -7.1978 -0.5829 15 6 0.0129 -7.1679 -1.2128 16 6 -0.5823 -8.3434 -1.6116 17 6 0.0504 -9.5594 -1.3796 18 8 -0.5433 -10.7160 -1.7702 19 6 1.2890 -9.5951 -0.7493 20 6 1.8957 -8.4251 -0.3519 21 6 0.0614 -2.3289 -0.9808 22 6 -0.0935 -3.1542 -2.2597 23 6 -0.0044 -1.6290 -2.3396 24 1 -0.4849 0.8401 -0.0004 25 1 0.3304 -4.7369 -0.8743 26 1 2.8679 -5.9712 0.3291 27 1 -0.4817 -6.2242 -1.3892 28 1 -1.5447 -8.3212 -2.1012 29 1 -1.1163 -11.1103 -1.0984 30 1 1.7761 -10.5424 -0.5710 31 1 2.8582 -8.4538 0.1373 32 1 -0.8075 -2.2436 -0.3281 33 1 0.7702 -3.7275 -2.5965 34 1 -1.0644 -3.6122 -2.4486 35 1 -0.9166 -1.0834 -2.5811 36 1 0.9181 -1.1981 -2.7290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274127119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:28 Heat of formation + Delta-G solvation = 7.620971 kcal Electronic energy + Delta-G solvation = -20129.822654 eV Core-core repulsion = 16967.157740 eV Total energy + Delta-G solvation = -3162.664914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70345 -39.00343 -36.97605 -36.13533 -33.52190 -32.58764 -31.21475 -31.03526 -28.67911 -25.52189 -23.56193 -22.69381 -21.83648 -21.52214 -20.42641 -18.52087 -18.07436 -17.13031 -16.54885 -15.66643 -15.33993 -15.16633 -15.04150 -14.31106 -14.08633 -13.80549 -13.43943 -13.30680 -12.90899 -12.54162 -12.46323 -12.01634 -11.64919 -11.48559 -11.17208 -11.02243 -10.82665 -10.50416 -10.43094 -10.39987 -9.95380 -9.70151 -9.45131 -9.01933 -8.94586 -8.40070 -7.89644 -7.72381 -6.45932 -3.87164 0.76764 1.39643 2.32725 3.13115 3.19087 3.24711 3.76418 4.03091 4.18248 4.43567 4.60023 4.71945 4.87362 4.94137 5.07903 5.18486 5.36042 5.50972 5.60790 5.72667 5.83671 5.85545 5.96952 6.07014 6.18284 6.24803 6.33917 6.42212 6.48214 6.64901 6.80690 6.84757 6.94700 7.07277 7.15187 7.43514 7.56975 8.01703 8.40571 9.10693 9.31784 9.95171 10.56544 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.004016 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.086747 B = 6970.981844 C = 7562.668059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.037 3.963 3 Si 0.924 3.076 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.105 0.895 9 N -0.402 5.402 10 C 0.457 3.543 11 O -0.601 6.601 12 C -0.152 4.152 13 C -0.096 4.096 14 C -0.047 4.047 15 C -0.101 4.101 16 C -0.141 4.141 17 C 0.088 3.912 18 O -0.502 6.502 19 C -0.143 4.143 20 C -0.097 4.097 21 C 0.130 3.870 22 C -0.226 4.226 23 C -0.147 4.147 24 H 0.270 0.730 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.386 0.614 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 -12.708 -3.715 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.169 4.169 3 Si 0.750 3.250 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.427 4.427 8 H 0.123 0.877 9 N -0.118 5.118 10 C 0.251 3.749 11 O -0.490 6.490 12 C -0.173 4.173 13 C -0.118 4.118 14 C -0.047 4.047 15 C -0.119 4.119 16 C -0.159 4.159 17 C 0.044 3.956 18 O -0.311 6.311 19 C -0.162 4.162 20 C -0.116 4.116 21 C 0.025 3.975 22 C -0.264 4.264 23 C -0.185 4.185 24 H 0.081 0.919 25 H 0.143 0.857 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.241 0.759 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.017 -12.380 -3.932 13.597 hybrid contribution -0.141 0.854 0.326 0.925 sum -4.159 -11.526 -3.606 12.773 Atomic orbital electron populations 1.69903 1.06078 1.27851 1.45535 1.25327 0.95434 0.99806 0.96378 0.85953 0.79558 0.80731 0.78713 1.20145 1.19282 1.20639 1.19769 0.95207 0.82963 1.44794 0.87726 1.43262 1.16200 1.05423 1.46869 1.16709 0.88059 0.83752 0.86378 1.90651 1.26486 1.87093 1.44737 1.22617 1.00825 0.93760 1.00127 1.22070 0.99989 0.90038 0.99707 1.19220 0.94186 0.93447 0.97830 1.21365 0.94785 0.98175 0.97573 1.21309 1.00790 0.91959 1.01869 1.18580 0.92996 0.85439 0.98593 1.84786 1.65262 1.37277 1.43815 1.21284 0.96053 0.98903 0.99958 1.21232 0.99887 0.91082 0.99360 1.21223 0.88357 1.00856 0.87074 1.23661 1.02065 0.95650 1.05028 1.22788 1.02269 0.92157 1.01274 0.91909 0.85661 0.85239 0.84998 0.85525 0.75864 0.85620 0.85273 0.86692 0.89227 0.89126 0.89475 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.50 10.35 55.50 0.57 -20.92 16 2 C 0.04 0.93 4.88 -17.44 -0.09 0.84 16 3 Si 0.92 20.02 29.58 -169.99 -5.03 14.99 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.17 9.20 -15.04 -0.14 -8.30 16 8 H 0.11 3.01 7.37 -52.49 -0.39 2.62 16 9 N -0.40 -10.19 2.93 -110.89 -0.32 -10.51 16 10 C 0.46 11.43 7.33 -14.90 -0.11 11.32 16 11 O -0.60 -17.09 15.79 5.12 0.08 -17.01 16 12 C -0.15 -3.02 7.47 -39.32 -0.29 -3.31 16 13 C -0.10 -1.71 9.41 -37.16 -0.35 -2.06 16 14 C -0.05 -0.69 5.87 -105.05 -0.62 -1.31 16 15 C -0.10 -1.37 9.40 -39.13 -0.37 -1.74 16 16 C -0.14 -1.71 9.97 -39.50 -0.39 -2.10 16 17 C 0.09 1.05 6.71 -39.00 -0.26 0.79 16 18 O -0.50 -5.14 13.49 -18.95 -0.26 -5.40 16 19 C -0.14 -1.68 9.97 -39.50 -0.39 -2.08 16 20 C -0.10 -1.26 9.79 -39.13 -0.38 -1.64 16 21 C 0.13 2.82 3.57 -67.94 -0.24 2.58 16 22 C -0.23 -3.92 7.86 -26.74 -0.21 -4.13 16 23 C -0.15 -2.90 8.89 -26.74 -0.24 -3.13 16 24 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 25 H 0.13 2.18 3.23 -52.49 -0.17 2.01 16 26 H 0.13 2.42 7.46 -52.49 -0.39 2.03 16 27 H 0.13 1.69 6.16 -52.49 -0.32 1.37 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.39 2.04 9.06 45.56 0.41 2.45 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.12 2.59 7.74 -51.93 -0.40 2.19 16 33 H 0.09 1.59 7.20 -51.93 -0.37 1.21 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -31.19 308.91 -7.69 -38.88 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.31 Total: 9.60 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -4.08 Total: -14.29 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.25 Total: -31.43 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.17 Total: -22.41 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.19 -7.69 -38.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274127119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.501 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds