Wall clock time and date at job start Mon Mar 30 2020 00:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47191 * 89.99978 * 3 2 1 5 5 H 1.48502 * 109.46961 * 209.99789 * 3 2 1 6 6 H 1.48499 * 109.47322 * 329.99493 * 3 2 1 7 7 C 1.39095 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00021 * 194.86738 * 7 2 1 9 9 N 1.36757 * 119.99902 * 14.86350 * 7 2 1 10 10 C 1.34773 * 119.99765 * 197.05476 * 9 7 2 11 11 O 1.21780 * 120.00212 * 4.98220 * 10 9 7 12 12 C 1.41800 * 119.99964 * 184.97607 * 10 9 7 13 13 C 1.35139 * 120.00030 * 174.29644 * 12 10 9 14 14 C 1.46948 * 119.99957 * 180.02562 * 13 12 10 15 15 C 1.40007 * 120.11324 * 359.72546 * 14 13 12 16 16 C 1.37661 * 119.87761 * 179.72060 * 15 14 13 17 17 C 1.39025 * 120.11435 * 0.55177 * 16 15 14 18 18 O 1.35746 * 119.87956 * 179.74272 * 17 16 15 19 19 C 1.39024 * 120.23868 * 359.72757 * 17 16 15 20 20 C 1.37656 * 120.11418 * 359.97438 * 19 17 16 21 21 C 1.46496 * 119.99829 * 17.05785 * 9 7 2 22 22 C 1.53000 * 117.49660 * 126.97105 * 21 9 7 23 23 C 1.52991 * 59.99921 * 252.50615 * 22 21 9 24 24 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00044 * 354.29157 * 12 10 9 26 26 H 1.07994 * 119.99960 * 0.02562 * 13 12 10 27 27 H 1.08002 * 120.06433 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.94007 * 180.25126 * 16 15 14 29 29 H 0.96704 * 114.00055 * 269.98046 * 18 17 16 30 30 H 1.07998 * 119.94627 * 179.97438 * 19 17 16 31 31 H 1.08008 * 120.05888 * 180.02562 * 20 19 17 32 32 H 1.09005 * 115.54956 * 272.67381 * 21 9 7 33 33 H 1.09001 * 117.50188 * 0.02562 * 22 21 9 34 34 H 1.08997 * 117.49822 * 145.01883 * 22 21 9 35 35 H 1.08998 * 117.50534 * 252.51030 * 23 22 21 36 36 H 1.09006 * 117.51657 * 107.47910 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 1.4001 5 1 3.5451 1.4401 -0.7000 6 1 1.4450 2.6526 -0.7001 7 6 2.0089 -1.2046 0.0005 8 1 3.0617 -1.2202 0.2405 9 7 1.3594 -2.3693 -0.3027 10 6 1.9135 -3.5541 0.0221 11 8 2.9471 -3.5871 0.6652 12 6 1.2929 -4.7624 -0.3850 13 6 1.9058 -5.9457 -0.1606 14 6 1.2629 -7.1978 -0.5829 15 6 0.0129 -7.1679 -1.2128 16 6 -0.5823 -8.3434 -1.6116 17 6 0.0504 -9.5594 -1.3796 18 8 -0.5433 -10.7160 -1.7702 19 6 1.2890 -9.5951 -0.7493 20 6 1.8957 -8.4251 -0.3519 21 6 0.0614 -2.3289 -0.9808 22 6 -0.0935 -3.1542 -2.2597 23 6 -0.0044 -1.6290 -2.3396 24 1 -0.4849 0.8401 -0.0004 25 1 0.3304 -4.7369 -0.8743 26 1 2.8679 -5.9712 0.3291 27 1 -0.4817 -6.2242 -1.3892 28 1 -1.5447 -8.3212 -2.1012 29 1 -1.1163 -11.1103 -1.0984 30 1 1.7761 -10.5424 -0.5710 31 1 2.8582 -8.4538 0.1373 32 1 -0.8075 -2.2436 -0.3281 33 1 0.7702 -3.7275 -2.5965 34 1 -1.0644 -3.6122 -2.4486 35 1 -0.9166 -1.0834 -2.5811 36 1 0.9181 -1.1981 -2.7290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274127119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:27 Heat of formation + Delta-G solvation = -12.548991 kcal Electronic energy + Delta-G solvation = -20130.697289 eV Core-core repulsion = 16967.157740 eV Total energy + Delta-G solvation = -3163.539550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99431 -40.45212 -38.11093 -37.73998 -35.21017 -34.07116 -33.10490 -32.00908 -29.95204 -27.28093 -24.95747 -23.76355 -23.24845 -23.11632 -21.84521 -19.73381 -19.32969 -18.93927 -18.08315 -17.06951 -16.71855 -16.52578 -16.13690 -15.92733 -15.70429 -15.20295 -14.92429 -14.56481 -14.33219 -14.08183 -13.58062 -13.40636 -13.07972 -12.96118 -12.72334 -12.48825 -12.41310 -12.26258 -12.13011 -11.70846 -11.31598 -11.09816 -10.98949 -10.68677 -10.32347 -9.97437 -9.78240 -8.98047 -8.35438 -5.90139 -0.41962 0.43962 1.00501 1.39661 1.40666 1.51423 2.25152 2.47816 2.85476 2.96957 3.11488 3.24305 3.34106 3.79566 3.85872 4.05188 4.18532 4.23481 4.34946 4.41526 4.43160 4.53641 4.70453 4.81274 4.91270 5.06954 5.10887 5.21028 5.27059 5.37167 5.39852 5.45395 5.45673 5.57536 5.75892 5.87629 6.07102 6.51014 6.90148 7.16038 7.44497 8.05173 8.64904 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.004016 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.086747 B = 6970.981844 C = 7562.668059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.013 3.987 3 Si 0.981 3.019 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.349 4.349 8 H 0.070 0.930 9 N -0.416 5.416 10 C 0.448 3.552 11 O -0.654 6.654 12 C -0.187 4.187 13 C -0.054 4.054 14 C -0.083 4.083 15 C -0.095 4.095 16 C -0.148 4.148 17 C 0.107 3.893 18 O -0.507 6.507 19 C -0.149 4.149 20 C -0.091 4.091 21 C 0.102 3.898 22 C -0.182 4.182 23 C -0.149 4.149 24 H 0.276 0.724 25 H 0.151 0.849 26 H 0.113 0.887 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.412 0.588 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.582 -15.107 -5.146 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.088 0.912 9 N -0.131 5.131 10 C 0.243 3.757 11 O -0.546 6.546 12 C -0.207 4.207 13 C -0.075 4.075 14 C -0.083 4.083 15 C -0.113 4.113 16 C -0.166 4.166 17 C 0.062 3.938 18 O -0.321 6.321 19 C -0.167 4.167 20 C -0.109 4.109 21 C -0.003 4.003 22 C -0.220 4.220 23 C -0.187 4.187 24 H 0.086 0.914 25 H 0.169 0.831 26 H 0.131 0.869 27 H 0.156 0.844 28 H 0.167 0.833 29 H 0.272 0.728 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.120 0.880 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.013 -14.802 -5.371 16.856 hybrid contribution 0.428 1.201 0.777 1.493 sum -5.584 -13.602 -4.594 15.404 Atomic orbital electron populations 1.69966 1.06541 1.28711 1.45003 1.25918 0.96296 1.01699 0.95267 0.85128 0.78377 0.77483 0.78544 1.20188 1.19951 1.18664 1.19602 0.94425 0.85036 1.48577 0.91197 1.43362 1.17341 1.04843 1.47516 1.17573 0.87444 0.85340 0.85295 1.90585 1.28843 1.88145 1.47040 1.22340 1.02470 0.91867 1.04045 1.22227 0.98536 0.91098 0.95662 1.19111 0.95671 0.92510 1.01039 1.21492 0.94002 0.99226 0.96571 1.21541 1.01726 0.91402 1.01917 1.18753 0.92741 0.86039 0.96268 1.84720 1.65770 1.36525 1.45076 1.21533 0.96180 0.99336 0.99682 1.21430 1.00179 0.90844 0.98446 1.21202 0.86287 1.04961 0.87836 1.23707 1.04114 0.94089 1.00075 1.22746 1.01856 0.94280 0.99810 0.91363 0.83131 0.86894 0.84376 0.83269 0.72849 0.83251 0.84187 0.88013 0.89360 0.84813 0.88038 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.20 10.35 21.69 0.22 -43.98 16 2 C 0.01 0.70 4.88 84.97 0.41 1.12 16 3 Si 0.98 42.19 29.58 68.60 2.03 44.22 16 4 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.35 -20.22 9.20 84.13 0.77 -19.45 16 8 H 0.07 4.40 7.37 -2.91 -0.02 4.38 16 9 N -0.42 -22.16 2.93 -622.93 -1.82 -23.98 16 10 C 0.45 23.65 7.33 85.12 0.62 24.27 16 11 O -0.65 -39.79 15.79 -4.60 -0.07 -39.86 16 12 C -0.19 -7.52 7.47 22.44 0.17 -7.36 16 13 C -0.05 -1.91 9.41 23.84 0.22 -1.69 16 14 C -0.08 -2.32 5.87 -20.14 -0.12 -2.44 16 15 C -0.09 -2.29 9.40 22.56 0.21 -2.08 16 16 C -0.15 -2.98 9.97 22.32 0.22 -2.75 16 17 C 0.11 2.08 6.71 22.65 0.15 2.23 16 18 O -0.51 -7.98 13.49 -90.71 -1.22 -9.20 16 19 C -0.15 -2.93 9.97 22.32 0.22 -2.71 16 20 C -0.09 -2.12 9.79 22.56 0.22 -1.90 16 21 C 0.10 4.46 3.57 44.99 0.16 4.62 16 22 C -0.18 -6.01 7.86 30.59 0.24 -5.77 16 23 C -0.15 -5.83 8.89 30.59 0.27 -5.56 16 24 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 25 H 0.15 5.11 3.23 -2.91 -0.01 5.10 16 26 H 0.11 4.37 7.46 -2.91 -0.02 4.35 16 27 H 0.14 3.11 6.16 -2.91 -0.02 3.09 16 28 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.41 2.31 9.06 -74.05 -0.67 1.64 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.10 4.67 7.74 -2.38 -0.02 4.65 16 33 H 0.09 2.99 7.20 -2.39 -0.02 2.97 16 34 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 Total: -1.00 -72.19 308.91 3.37 -68.83 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.44 Total: 23.43 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.79 Total: -19.45 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -1.60 Total: -67.96 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -1.30 Total: -49.07 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -72.19 3.37 -68.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274127119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.278 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds