Wall clock time and date at job start Mon Mar 30 2020 01:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31321 * 1 3 3 Si 1.86796 * 119.99850 * 2 1 4 4 H 1.48505 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47354 * 300.00033 * 3 2 1 6 6 H 1.48501 * 109.47089 * 60.00498 * 3 2 1 7 7 C 1.39121 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00291 * 191.52802 * 7 2 1 9 9 N 1.36716 * 120.00230 * 11.52443 * 7 2 1 10 10 C 1.34768 * 120.00425 * 196.39533 * 9 7 2 11 11 O 1.21768 * 120.00095 * 4.49870 * 10 9 7 12 12 C 1.46235 * 120.00439 * 184.49596 * 10 9 7 13 13 C 1.34975 * 120.00154 * 174.40935 * 12 10 9 14 14 C 1.47155 * 119.99750 * 180.02562 * 13 12 10 15 15 C 1.39903 * 120.14706 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.93759 * 179.72131 * 15 14 13 17 17 C 1.38347 * 120.23413 * 359.97438 * 16 15 14 18 18 C 1.38872 * 120.29300 * 359.97438 * 17 16 15 19 19 O 1.35909 * 119.96720 * 180.02562 * 18 17 16 20 20 C 1.38405 * 120.06195 * 0.05778 * 18 17 16 21 21 C 1.46501 * 119.99727 * 16.39995 * 9 7 2 22 22 C 1.53001 * 117.50007 * 128.76568 * 21 9 7 23 23 C 1.53004 * 117.50002 * 60.10814 * 21 9 7 24 24 H 0.96993 * 120.00429 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99754 * 354.41379 * 12 10 9 26 26 H 1.07994 * 120.00080 * 359.97438 * 13 12 10 27 27 H 1.08006 * 120.03571 * 359.70320 * 15 14 13 28 28 H 1.08001 * 119.88762 * 179.97438 * 16 15 14 29 29 H 1.07991 * 119.85531 * 180.02562 * 17 16 15 30 30 H 0.96703 * 113.99469 * 90.00601 * 19 18 17 31 31 H 1.08008 * 120.11568 * 179.97438 * 20 18 17 32 32 H 1.08998 * 115.54931 * 274.43602 * 21 9 7 33 33 H 1.09003 * 117.49822 * 0.02562 * 22 21 9 34 34 H 1.09004 * 117.50082 * 145.02044 * 22 21 9 35 35 H 1.08998 * 117.49609 * 214.98524 * 23 21 9 36 36 H 1.09003 * 117.49557 * 359.97021 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.7072 1.3464 -0.0006 5 1 1.8884 2.3965 -1.2125 6 1 1.8885 2.3964 1.2126 7 6 2.0088 -1.2048 -0.0005 8 1 3.0726 -1.2143 0.1864 9 7 1.3460 -2.3768 -0.2376 10 6 1.9222 -3.5530 0.0799 11 8 2.9968 -3.5697 0.6523 12 6 1.2568 -4.8093 -0.2629 13 6 1.8832 -5.9854 -0.0476 14 6 1.2138 -7.2495 -0.3931 15 6 -0.0715 -7.2359 -0.9453 16 6 -0.6924 -8.4227 -1.2727 17 6 -0.0486 -9.6282 -1.0577 18 6 1.2278 -9.6529 -0.5111 19 8 1.8544 -10.8409 -0.3032 20 6 1.8621 -8.4689 -0.1773 21 6 0.0094 -2.3541 -0.8369 22 6 -0.2315 -3.2409 -2.0602 23 6 -0.1327 -1.7220 -2.2231 24 1 -0.4850 0.8399 0.0004 25 1 0.2643 -4.7961 -0.6883 26 1 2.8759 -5.9986 0.3774 27 1 -0.5772 -6.2967 -1.1147 28 1 -1.6849 -8.4112 -1.6986 29 1 -0.5404 -10.5540 -1.3168 30 1 2.3838 -11.1430 -1.0539 31 1 2.8547 -8.4872 0.2482 32 1 -0.8171 -2.2253 -0.1380 33 1 0.6043 -3.8415 -2.4189 34 1 -1.2166 -3.6953 -2.1663 35 1 -1.0527 -1.1778 -2.4361 36 1 0.7683 -1.3227 -2.6888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275496642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:39 Heat of formation + Delta-G solvation = 5.701073 kcal Electronic energy + Delta-G solvation = -20118.203487 eV Core-core repulsion = 16955.455320 eV Total energy + Delta-G solvation = -3162.748168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68909 -38.88110 -36.92077 -36.08664 -33.62184 -32.83654 -31.19614 -30.33556 -28.89809 -25.61554 -23.63680 -22.55657 -21.85645 -21.51276 -20.44153 -18.61549 -17.51292 -17.06934 -16.61994 -16.06376 -15.34479 -15.15264 -15.10664 -14.33071 -14.06965 -13.88792 -13.44486 -13.12034 -12.80587 -12.57582 -12.39798 -12.02331 -11.75704 -11.33906 -11.21391 -10.99759 -10.81032 -10.51528 -10.47822 -10.36856 -9.96522 -9.88371 -9.43858 -8.94198 -8.74637 -8.42529 -7.96004 -7.82919 -6.42803 -3.88593 0.83654 1.30532 2.39575 3.12249 3.19939 3.26594 3.75176 4.01961 4.14788 4.38752 4.61690 4.68618 4.88903 4.95498 5.12653 5.18199 5.29927 5.47511 5.57196 5.73368 5.78845 5.86451 5.96054 6.04798 6.17892 6.22639 6.36720 6.40088 6.45254 6.67712 6.80052 6.86288 6.94518 7.03439 7.17263 7.44641 7.57373 8.00495 8.40419 9.10276 9.31917 9.93530 10.58633 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.004032 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.499914 B = 6943.578064 C = 7559.403016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.036 3.964 3 Si 0.926 3.074 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.403 5.403 10 C 0.458 3.542 11 O -0.597 6.597 12 C -0.144 4.144 13 C -0.104 4.104 14 C -0.022 4.022 15 C -0.125 4.125 16 C -0.101 4.101 17 C -0.156 4.156 18 C 0.102 3.898 19 O -0.501 6.501 20 C -0.138 4.138 21 C 0.134 3.866 22 C -0.229 4.229 23 C -0.145 4.145 24 H 0.269 0.731 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.388 0.612 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -12.752 -5.992 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.428 4.428 8 H 0.123 0.877 9 N -0.119 5.119 10 C 0.250 3.750 11 O -0.485 6.485 12 C -0.165 4.165 13 C -0.125 4.125 14 C -0.022 4.022 15 C -0.143 4.143 16 C -0.119 4.119 17 C -0.175 4.175 18 C 0.058 3.942 19 O -0.311 6.311 20 C -0.157 4.157 21 C 0.029 3.971 22 C -0.267 4.267 23 C -0.182 4.182 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.243 0.757 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.634 -12.489 -5.159 13.993 hybrid contribution 0.374 0.886 -0.524 1.095 sum -3.260 -11.604 -5.683 13.326 Atomic orbital electron populations 1.69889 1.05998 1.27623 1.46330 1.25329 0.95510 0.99759 0.96390 0.85855 0.80007 0.81022 0.77888 1.19102 1.20507 1.20576 1.19824 0.94260 0.82472 1.46282 0.87680 1.43166 1.13624 1.05295 1.49796 1.17802 0.87718 0.83624 0.85813 1.90648 1.23705 1.87016 1.47092 1.23613 1.00489 0.93413 0.99025 1.22036 1.00152 0.89911 1.00405 1.19023 0.93622 0.92855 0.96703 1.21507 0.94702 0.98671 0.99457 1.20934 0.99758 0.91775 0.99459 1.21407 0.95612 0.98614 1.01866 1.18344 0.92116 0.84730 0.99042 1.84829 1.67049 1.35637 1.43614 1.21604 1.00845 0.91057 1.02205 1.21218 0.87207 1.00193 0.88480 1.23711 1.01909 0.95138 1.05958 1.22780 1.02176 0.92379 1.00911 0.91998 0.85384 0.85281 0.85157 0.85605 0.85828 0.75709 0.85182 0.86638 0.89277 0.89135 0.89491 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.57 10.08 55.50 0.56 -21.01 16 2 C 0.04 0.90 5.01 -17.44 -0.09 0.82 16 3 Si 0.93 20.09 29.57 -169.99 -5.03 15.06 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.20 9.25 -15.05 -0.14 -8.34 16 8 H 0.11 3.03 7.34 -52.48 -0.39 2.65 16 9 N -0.40 -10.21 2.93 -109.36 -0.32 -10.53 16 10 C 0.46 11.45 7.47 -13.05 -0.10 11.35 16 11 O -0.60 -16.97 15.91 5.13 0.08 -16.89 16 12 C -0.14 -2.84 7.54 -37.53 -0.28 -3.12 16 13 C -0.10 -1.85 9.46 -37.12 -0.35 -2.20 16 14 C -0.02 -0.33 5.87 -105.08 -0.62 -0.94 16 15 C -0.13 -1.67 9.41 -39.09 -0.37 -2.04 16 16 C -0.10 -1.15 10.02 -39.67 -0.40 -1.55 16 17 C -0.16 -1.77 9.98 -39.31 -0.39 -2.16 16 18 C 0.10 1.26 6.69 -39.28 -0.26 0.99 16 19 O -0.50 -5.39 13.50 -19.45 -0.26 -5.65 16 20 C -0.14 -1.89 9.73 -38.94 -0.38 -2.27 16 21 C 0.13 2.91 3.61 -67.93 -0.25 2.66 16 22 C -0.23 -3.95 7.79 -26.69 -0.21 -4.16 16 23 C -0.14 -2.85 8.89 -26.69 -0.24 -3.08 16 24 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 25 H 0.13 2.20 3.25 -52.49 -0.17 2.03 16 26 H 0.13 2.43 7.53 -52.49 -0.40 2.04 16 27 H 0.13 1.63 6.16 -52.48 -0.32 1.31 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.39 2.21 9.06 45.56 0.41 2.63 16 31 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.12 2.61 7.68 -51.93 -0.40 2.21 16 33 H 0.09 1.55 7.04 -51.93 -0.37 1.19 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -31.19 309.01 -7.67 -38.86 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.30 Total: 9.54 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -4.07 Total: -14.04 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.24 Total: -31.54 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.18 Total: -22.54 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.19 -7.67 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275496642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.561 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds