Wall clock time and date at job start Mon Mar 30 2020 00:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48493 * 109.47137 * 240.00476 * 3 2 1 5 5 H 1.48496 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46736 * 120.00280 * 3 2 1 7 7 C 1.37876 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47522 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47573 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00369 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99911 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99978 * 179.97438 * 12 11 10 15 15 H 1.09003 * 110.06981 * 60.07712 * 14 12 11 16 16 C 1.53489 * 110.08759 * 298.54638 * 14 12 11 17 17 C 1.50955 * 105.33318 * 240.78747 * 16 14 12 18 18 O 1.21257 * 125.94143 * 180.02562 * 17 16 14 19 19 C 1.47221 * 108.10639 * 0.02562 * 17 16 14 20 20 C 1.40381 * 130.01677 * 180.02562 * 19 17 16 21 21 C 1.37695 * 120.06457 * 179.97438 * 20 19 17 22 22 C 1.38421 * 120.16603 * 0.27997 * 21 20 19 23 23 C 1.38279 * 120.19357 * 359.46355 * 22 21 20 24 24 C 1.38206 * 120.32989 * 0.51465 * 23 22 21 25 25 H 0.96993 * 120.00110 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46575 * 60.00213 * 9 7 2 27 27 H 1.08997 * 109.46971 * 300.00163 * 9 7 2 28 28 H 1.09001 * 109.47165 * 60.00032 * 10 9 7 29 29 H 1.09007 * 109.47086 * 300.00089 * 10 9 7 30 30 H 0.97002 * 119.99655 * 0.02562 * 11 10 9 31 31 H 1.08999 * 110.26883 * 121.82768 * 16 14 12 32 32 H 1.08996 * 110.35051 * 359.79242 * 16 14 12 33 33 H 1.07996 * 119.96758 * 0.02562 * 20 19 17 34 34 H 1.08002 * 119.91322 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.89958 * 179.69783 * 22 21 20 36 36 H 1.08004 * 119.83278 * 180.27599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5128 -4.9309 -0.0024 12 6 2.1866 -6.0980 -0.0031 13 8 3.3994 -6.0980 -0.0027 14 6 1.4331 -7.4031 -0.0031 15 1 0.8034 -7.4714 -0.8902 16 6 0.5735 -7.5156 1.2635 17 6 1.0841 -8.7392 1.9851 18 8 0.6634 -9.1728 3.0364 19 6 2.1817 -9.3145 1.1901 20 6 2.9748 -10.4470 1.4330 21 6 3.9589 -10.8046 0.5388 22 6 4.1737 -10.0463 -0.5991 23 6 3.3941 -8.9321 -0.8497 24 6 2.4021 -8.5604 0.0379 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6048 0.8877 29 1 2.8712 -3.6040 -0.8923 30 1 0.5428 -4.9308 -0.0024 31 1 -0.4757 -7.6443 0.9976 32 1 0.6988 -6.6300 1.8865 33 1 2.8124 -11.0388 2.3216 34 1 4.5680 -11.6761 0.7283 35 1 4.9500 -10.3279 -1.2951 36 1 3.5639 -8.3471 -1.7417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277307802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:05 Heat of formation + Delta-G solvation = -58.032275 kcal Electronic energy + Delta-G solvation = -19827.174242 eV Core-core repulsion = 16661.662390 eV Total energy + Delta-G solvation = -3165.511853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09979 -39.02109 -38.21537 -35.14150 -34.90067 -32.88854 -31.23786 -30.13708 -29.10199 -26.87337 -24.69165 -23.16234 -22.12629 -20.97323 -20.28924 -19.89789 -17.27017 -16.89296 -16.46783 -16.16019 -15.67503 -15.34382 -15.02455 -14.76562 -14.46691 -14.17246 -14.08038 -13.53822 -13.23748 -13.06956 -12.85096 -12.33176 -12.30444 -11.92304 -11.84411 -11.27343 -11.21900 -11.05091 -10.69461 -10.38313 -9.98620 -9.83179 -9.55421 -9.31135 -9.13314 -8.95706 -8.62792 -8.41900 -6.13078 -4.16298 0.43849 1.14885 2.22122 2.79301 3.28851 3.32227 3.33372 3.38687 3.66574 3.77803 4.11621 4.38679 4.40863 4.70547 4.80310 4.84147 4.86238 5.08358 5.16294 5.24082 5.30959 5.41373 5.54594 5.59101 5.79269 6.10183 6.19473 6.23949 6.25950 6.27312 6.65828 6.66279 6.79250 7.28138 7.45539 7.55679 7.83920 7.87800 8.22254 8.49614 8.89305 9.48875 10.98420 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.003457 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.869084 B = 8098.461746 C = 8646.755840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.719 5.719 12 C 0.513 3.487 13 O -0.537 6.537 14 C -0.076 4.076 15 H 0.123 0.877 16 C -0.167 4.167 17 C 0.412 3.588 18 O -0.443 6.443 19 C -0.190 4.190 20 C -0.055 4.055 21 C -0.135 4.135 22 C -0.084 4.084 23 C -0.094 4.094 24 C -0.020 4.020 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.399 0.601 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -20.410 -1.700 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.369 5.369 12 C 0.297 3.703 13 O -0.414 6.414 14 C -0.098 4.098 15 H 0.141 0.859 16 C -0.204 4.204 17 C 0.290 3.710 18 O -0.318 6.318 19 C -0.191 4.191 20 C -0.073 4.073 21 C -0.153 4.153 22 C -0.102 4.102 23 C -0.112 4.112 24 C -0.021 4.021 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.233 0.767 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.595 -20.466 -1.145 20.662 hybrid contribution 0.015 1.068 -0.130 1.076 sum 2.610 -19.398 -1.275 19.614 Atomic orbital electron populations 1.69935 1.06089 1.27061 1.50169 1.24988 0.94896 0.99415 0.94907 0.86568 0.79530 0.82626 0.78804 1.20091 1.21217 1.20092 1.21005 0.93210 0.90387 1.51657 0.92307 1.19322 0.94176 0.91065 0.97897 1.21768 0.96097 0.81308 1.00917 1.46334 1.10623 1.06402 1.73518 1.20083 0.88125 0.84817 0.77304 1.90712 1.13616 1.87455 1.49597 1.20638 0.96284 0.92145 1.00689 0.85882 1.22356 1.01706 0.99958 0.96425 1.22387 0.80601 0.84268 0.83738 1.90546 1.57869 1.63003 1.20399 1.21049 1.00987 0.98799 0.98232 1.21094 0.93217 0.94394 0.98600 1.21071 0.98627 1.00698 0.94923 1.21333 0.97943 0.93997 0.96920 1.20607 0.94334 0.96520 0.99714 1.20027 0.94764 0.93472 0.93811 0.92736 0.95889 0.95886 0.92461 0.92417 0.76727 0.86128 0.86495 0.85423 0.85268 0.85168 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.44 5.61 -4.05 -0.02 2.42 16 11 N -0.72 -11.38 5.41 -60.30 -0.33 -11.71 16 12 C 0.51 7.88 6.93 -10.99 -0.08 7.81 16 13 O -0.54 -10.32 15.62 5.56 0.09 -10.23 16 14 C -0.08 -0.85 3.34 -92.53 -0.31 -1.16 16 15 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.17 -1.71 6.41 -27.50 -0.18 -1.89 16 17 C 0.41 5.25 7.77 -30.54 -0.24 5.01 16 18 O -0.44 -6.76 18.02 5.58 0.10 -6.66 16 19 C -0.19 -2.34 6.11 -104.99 -0.64 -2.98 16 20 C -0.05 -0.59 10.11 -38.97 -0.39 -0.99 16 21 C -0.14 -1.24 10.02 -39.71 -0.40 -1.64 16 22 C -0.08 -0.79 10.04 -39.50 -0.40 -1.19 16 23 C -0.09 -1.06 9.43 -39.58 -0.37 -1.43 16 24 C -0.02 -0.24 5.03 -104.03 -0.52 -0.77 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.40 5.27 8.44 -40.82 -0.34 4.93 16 31 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 1.28 7.61 -51.93 -0.40 0.88 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -32.97 316.84 -8.26 -41.23 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.51 Total: 1.08 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.10 Total: -9.63 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.41 Total: -36.64 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.19 Total: -16.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.97 -8.26 -41.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277307802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.801 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds