Wall clock time and date at job start Mon Mar 30 2020 01:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29454 * 118.17016 * 2 1 4 4 C 1.49975 * 124.61020 * 180.83068 * 3 2 1 5 5 C 1.53103 * 110.40181 * 341.00656 * 4 3 2 6 6 N 1.47337 * 107.88311 * 45.46067 * 5 4 3 7 7 S 1.65602 * 121.37405 * 118.19046 * 6 5 4 8 8 O 1.42101 * 104.27735 * 26.09401 * 7 6 5 9 9 O 1.42100 * 104.27553 * 153.94938 * 7 6 5 10 10 C 1.81401 * 104.45263 * 270.02128 * 7 6 5 11 11 C 1.52998 * 109.47334 * 180.02562 * 10 7 6 12 12 C 1.53000 * 109.46933 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.46990 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00129 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00196 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99463 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00156 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47363 * 89.99744 * 17 15 13 19 19 H 1.48497 * 109.47247 * 209.99670 * 17 15 13 20 20 H 1.48503 * 109.47189 * 329.99935 * 17 15 13 21 21 C 1.46998 * 117.25071 * 298.21079 * 6 5 4 22 22 H 1.09004 * 109.47312 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46531 * 119.99995 * 1 2 3 24 24 H 1.08995 * 109.46943 * 239.99886 * 1 2 3 25 25 H 1.08002 * 117.69643 * 0.54932 * 3 2 1 26 26 H 1.08993 * 109.31398 * 101.29419 * 4 3 2 27 27 H 1.09000 * 109.31232 * 220.72386 * 4 3 2 28 28 H 1.08996 * 109.78113 * 285.85980 * 5 4 3 29 29 H 1.09002 * 109.77610 * 165.05101 * 5 4 3 30 30 H 1.09008 * 109.46864 * 300.00079 * 10 7 6 31 31 H 1.09004 * 109.46724 * 59.99830 * 10 7 6 32 32 H 1.08996 * 109.47101 * 300.00128 * 11 10 7 33 33 H 1.09002 * 109.46708 * 60.00167 * 11 10 7 34 34 H 1.09000 * 109.46988 * 299.99524 * 12 11 10 35 35 H 1.08993 * 109.47499 * 59.99877 * 12 11 10 36 36 H 0.97008 * 119.99812 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.52832 * 283.03992 * 21 6 5 38 38 H 1.09010 * 109.52362 * 162.85631 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3095 -0.0179 5 6 4.2967 0.0179 0.4315 6 7 3.6464 -1.1068 -0.2633 7 16 4.4910 -2.0845 -1.2993 8 8 5.8349 -1.9974 -0.8461 9 8 3.7864 -3.3182 -1.2696 10 6 4.3128 -1.2885 -2.9196 11 6 5.0583 -2.1076 -3.9750 12 6 4.9085 -1.4358 -5.3414 13 6 5.6423 -2.2429 -6.3812 14 1 6.1638 -3.1446 -6.0958 15 6 5.6489 -1.8296 -7.6966 16 7 5.0143 -0.7314 -8.0439 17 14 6.5591 -2.8297 -8.9852 18 1 5.6404 -3.8410 -9.5669 19 1 7.0458 -1.9272 -10.0594 20 1 7.7148 -3.5160 -8.3539 21 6 2.2169 -1.3250 0.0006 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3632 -0.5138 -0.8900 24 1 -0.3633 -0.5138 0.8899 25 1 1.5122 2.0351 0.0092 26 1 3.9310 1.5570 -1.0291 27 1 3.8877 2.1200 0.6553 28 1 4.1882 -0.1021 1.5094 29 1 5.3539 0.0525 0.1681 30 1 3.2564 -1.2328 -3.1828 31 1 4.7304 -0.2825 -2.8780 32 1 6.1146 -2.1637 -3.7120 33 1 4.6402 -3.1134 -4.0164 34 1 3.8523 -1.3794 -5.6047 35 1 5.3267 -0.4302 -5.2998 36 1 5.0186 -0.4408 -8.9694 37 1 2.0946 -1.8033 0.9723 38 1 1.7964 -1.9638 -0.7762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280849392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:34 Heat of formation + Delta-G solvation = -74.385329 kcal Electronic energy + Delta-G solvation = -19381.343950 eV Core-core repulsion = 16350.566927 eV Total energy + Delta-G solvation = -3030.777023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.88799 -36.97197 -35.76486 -34.66490 -33.80532 -32.18440 -31.86457 -27.80457 -27.22030 -25.13347 -23.71638 -22.90924 -20.57652 -19.03296 -17.83034 -17.60536 -16.60533 -16.26143 -15.71279 -15.04052 -14.77879 -14.75869 -14.47185 -14.14534 -13.96437 -13.09915 -12.88666 -12.60615 -12.34028 -12.30672 -12.20049 -12.11182 -11.93685 -11.77532 -11.74031 -11.37864 -11.22776 -10.92058 -10.84536 -10.80920 -10.40010 -9.94961 -9.50846 -9.23688 -9.01303 -8.89659 -8.40701 -6.05618 -4.08658 0.42841 2.01078 2.70999 3.30590 3.36657 3.40830 4.00389 4.24508 4.37993 4.43124 4.69873 4.80645 4.87101 5.14352 5.18321 5.19296 5.25334 5.30894 5.32978 5.40192 5.51369 5.53191 5.58846 5.77898 5.79915 5.91443 5.91617 6.24867 6.40140 6.45310 6.46522 6.79263 6.87518 7.57170 7.67082 7.92421 8.32986 8.97572 9.56036 11.05627 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025262 B = 0.004283 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.099276 B = 6535.218221 C = 6933.512227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.145 4.145 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.120 3.880 6 N -1.007 6.007 7 S 2.601 3.399 8 O -0.959 6.959 9 O -0.959 6.959 10 C -0.607 4.607 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.163 3.837 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.261 0.739 37 H 0.079 0.921 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 4.629 18.302 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.147 4.147 3 C -0.163 4.163 4 C -0.149 4.149 5 C -0.005 4.005 6 N -0.843 5.843 7 S 2.698 3.302 8 O -0.949 6.949 9 O -0.950 6.950 10 C -0.739 4.739 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.038 3.962 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.122 0.878 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.993 3.928 18.444 20.112 hybrid contribution 0.046 0.255 -1.218 1.245 sum -6.947 4.183 17.226 19.039 Atomic orbital electron populations 1.20900 0.91700 1.02558 1.02388 1.21191 0.96094 0.95131 1.02277 1.21790 0.95992 0.97058 1.01448 1.20838 0.93277 0.98068 1.02746 1.21477 0.97195 0.84464 0.97413 1.58073 1.19385 1.46665 1.60186 1.05405 0.73694 0.74546 0.76524 1.93555 1.35253 1.86581 1.79556 1.93560 1.73946 1.40732 1.86747 1.30592 1.10657 1.13091 1.19573 1.21505 0.98337 0.98170 0.96510 1.19056 0.97603 0.95857 0.88211 1.21258 1.32786 1.09639 0.92775 0.92371 1.25018 0.95538 0.95119 0.98678 1.69961 1.42806 1.22766 1.17915 0.86551 0.80131 0.79942 0.81164 1.20562 1.21170 1.19726 1.20066 0.78838 0.94629 1.02632 0.91897 0.91302 0.91598 0.87752 0.90127 0.89940 0.90762 0.88473 0.85529 0.85542 0.91616 0.91620 0.96157 0.96137 0.92908 0.90331 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.00 36.01 0.36 -0.53 16 2 C -0.15 -1.37 5.92 -100.82 -0.60 -1.97 16 3 C -0.14 -1.32 9.41 -35.95 -0.34 -1.66 16 4 C -0.11 -0.97 6.28 -28.18 -0.18 -1.15 16 5 C 0.12 1.21 6.46 -3.53 -0.02 1.19 16 6 N -1.01 -12.17 3.22 -114.80 -0.37 -12.54 16 7 S 2.60 39.89 5.44 -107.50 -0.59 39.30 16 8 O -0.96 -17.02 16.72 -57.54 -0.96 -17.98 16 9 O -0.96 -17.13 16.97 -57.54 -0.98 -18.11 16 10 C -0.61 -9.68 6.18 37.16 0.23 -9.45 16 11 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 12 C 0.03 0.79 4.97 -27.88 -0.14 0.66 16 13 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.16 1.74 6.14 -5.11 -0.03 1.71 16 22 H 0.06 0.43 7.56 -51.93 -0.39 0.03 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.10 0.83 7.56 -52.49 -0.40 0.43 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.99 7.03 -51.93 -0.37 0.63 16 30 H 0.13 1.85 8.14 -51.92 -0.42 1.42 16 31 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.01 7.47 -51.92 -0.39 0.62 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -34.15 324.95 -9.70 -43.85 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.16 Total: -2.90 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -1.26 Total: -27.20 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.37 Total: -38.48 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.94 Total: -36.09 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 39.89 SS G_CDS: -0.59 Total: 39.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.15 -9.70 -43.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280849392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.533 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds