Wall clock time and date at job start Mon Mar 30 2020 01:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29454 * 118.17016 * 2 1 4 4 C 1.49975 * 124.61020 * 180.83068 * 3 2 1 5 5 C 1.53103 * 110.40181 * 341.00656 * 4 3 2 6 6 N 1.47337 * 107.88311 * 45.46067 * 5 4 3 7 7 S 1.65602 * 121.37405 * 118.19046 * 6 5 4 8 8 O 1.42101 * 104.27735 * 26.09401 * 7 6 5 9 9 O 1.42100 * 104.27553 * 153.94938 * 7 6 5 10 10 C 1.81401 * 104.45263 * 270.02128 * 7 6 5 11 11 C 1.52998 * 109.47334 * 180.02562 * 10 7 6 12 12 C 1.53000 * 109.46933 * 180.02562 * 11 10 7 13 13 C 1.50697 * 109.46990 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00129 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00196 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99463 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00156 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47363 * 89.99744 * 17 15 13 19 19 H 1.48497 * 109.47247 * 209.99670 * 17 15 13 20 20 H 1.48503 * 109.47189 * 329.99935 * 17 15 13 21 21 C 1.46998 * 117.25071 * 298.21079 * 6 5 4 22 22 H 1.09004 * 109.47312 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46531 * 119.99995 * 1 2 3 24 24 H 1.08995 * 109.46943 * 239.99886 * 1 2 3 25 25 H 1.08002 * 117.69643 * 0.54932 * 3 2 1 26 26 H 1.08993 * 109.31398 * 101.29419 * 4 3 2 27 27 H 1.09000 * 109.31232 * 220.72386 * 4 3 2 28 28 H 1.08996 * 109.78113 * 285.85980 * 5 4 3 29 29 H 1.09002 * 109.77610 * 165.05101 * 5 4 3 30 30 H 1.09008 * 109.46864 * 300.00079 * 10 7 6 31 31 H 1.09004 * 109.46724 * 59.99830 * 10 7 6 32 32 H 1.08996 * 109.47101 * 300.00128 * 11 10 7 33 33 H 1.09002 * 109.46708 * 60.00167 * 11 10 7 34 34 H 1.09000 * 109.46988 * 299.99524 * 12 11 10 35 35 H 1.08993 * 109.47499 * 59.99877 * 12 11 10 36 36 H 0.97008 * 119.99812 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.52832 * 283.03992 * 21 6 5 38 38 H 1.09010 * 109.52362 * 162.85631 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3095 -0.0179 5 6 4.2967 0.0179 0.4315 6 7 3.6464 -1.1068 -0.2633 7 16 4.4910 -2.0845 -1.2993 8 8 5.8349 -1.9974 -0.8461 9 8 3.7864 -3.3182 -1.2696 10 6 4.3128 -1.2885 -2.9196 11 6 5.0583 -2.1076 -3.9750 12 6 4.9085 -1.4358 -5.3414 13 6 5.6423 -2.2429 -6.3812 14 1 6.1638 -3.1446 -6.0958 15 6 5.6489 -1.8296 -7.6966 16 7 5.0143 -0.7314 -8.0439 17 14 6.5591 -2.8297 -8.9852 18 1 5.6404 -3.8410 -9.5669 19 1 7.0458 -1.9272 -10.0594 20 1 7.7148 -3.5160 -8.3539 21 6 2.2169 -1.3250 0.0006 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3632 -0.5138 -0.8900 24 1 -0.3633 -0.5138 0.8899 25 1 1.5122 2.0351 0.0092 26 1 3.9310 1.5570 -1.0291 27 1 3.8877 2.1200 0.6553 28 1 4.1882 -0.1021 1.5094 29 1 5.3539 0.0525 0.1681 30 1 3.2564 -1.2328 -3.1828 31 1 4.7304 -0.2825 -2.8780 32 1 6.1146 -2.1637 -3.7120 33 1 4.6402 -3.1134 -4.0164 34 1 3.8523 -1.3794 -5.6047 35 1 5.3267 -0.4302 -5.2998 36 1 5.0186 -0.4408 -8.9694 37 1 2.0946 -1.8033 0.9723 38 1 1.7964 -1.9638 -0.7762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280849392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:33 Heat of formation + Delta-G solvation = -96.929142 kcal Electronic energy + Delta-G solvation = -19382.321523 eV Core-core repulsion = 16350.566927 eV Total energy + Delta-G solvation = -3031.754596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67145 -38.30581 -37.11019 -36.49334 -34.59330 -34.18074 -32.62744 -29.68071 -27.90339 -26.05834 -25.52561 -23.71597 -22.33972 -20.17544 -18.86821 -18.68805 -18.40998 -17.42624 -17.14984 -16.48804 -16.21459 -15.58164 -15.54868 -15.49705 -14.67374 -14.50509 -14.11750 -13.83944 -13.70759 -13.56865 -13.25871 -13.20801 -13.17317 -13.01439 -12.82073 -12.77416 -12.76536 -12.64480 -12.21814 -12.09266 -11.78232 -11.61281 -11.38783 -11.06591 -10.58791 -10.01272 -9.64512 -8.23731 -6.35094 -0.82047 1.32054 1.39885 1.40711 1.52193 1.60985 2.39242 2.75351 3.07243 3.09920 3.55282 3.76747 3.83162 4.00688 4.06430 4.15453 4.35228 4.46309 4.53885 4.60278 4.62298 4.66014 4.83056 4.88882 4.92174 4.95057 5.03028 5.09292 5.18346 5.23263 5.43214 5.52343 5.60236 5.76119 5.77569 6.10405 6.17966 6.80267 7.34421 8.87866 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025262 B = 0.004283 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.099276 B = 6535.218221 C = 6933.512227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.155 4.155 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.111 3.889 6 N -1.002 6.002 7 S 2.627 3.373 8 O -0.983 6.983 9 O -0.985 6.985 10 C -0.608 4.608 11 C -0.106 4.106 12 C 0.032 3.968 13 C -0.553 4.553 14 H 0.060 0.940 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.154 3.846 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.001 0.999 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 4.878 19.142 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.156 4.156 3 C -0.167 4.167 4 C -0.150 4.150 5 C -0.013 4.013 6 N -0.840 5.840 7 S 2.724 3.276 8 O -0.973 6.973 9 O -0.975 6.975 10 C -0.738 4.738 11 C -0.145 4.145 12 C -0.006 4.006 13 C -0.591 4.591 14 H 0.079 0.921 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C 0.030 3.970 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.219 4.173 19.282 21.007 hybrid contribution 0.078 0.234 -1.410 1.431 sum -7.141 4.407 17.872 19.744 Atomic orbital electron populations 1.20919 0.90439 1.03292 1.02792 1.21277 0.97023 0.94501 1.02833 1.21992 0.96293 0.97507 1.00939 1.20886 0.93061 0.97956 1.03090 1.21741 0.97104 0.84290 0.98183 1.57798 1.20118 1.46960 1.59083 1.04394 0.73002 0.74110 0.76092 1.93519 1.36988 1.86980 1.79842 1.93521 1.74387 1.42565 1.87062 1.30558 1.10906 1.13274 1.19104 1.21318 0.99298 0.98502 0.95363 1.18949 0.95835 0.95145 0.90698 1.21735 1.33243 1.10150 0.94009 0.92139 1.25939 0.96311 0.96214 1.01006 1.70075 1.43994 1.24297 1.18628 0.85463 0.79016 0.78466 0.78240 1.19684 1.20477 1.18861 1.20290 0.77793 0.95725 1.03212 0.91007 0.91535 0.90570 0.86396 0.90569 0.87589 0.89085 0.88779 0.84272 0.84008 0.91495 0.91577 0.98038 0.97909 0.92605 0.89101 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 10.00 71.24 0.71 -0.82 16 2 C -0.15 -2.61 5.92 -15.03 -0.09 -2.70 16 3 C -0.15 -2.37 9.41 27.00 0.25 -2.12 16 4 C -0.11 -1.70 6.28 29.66 0.19 -1.52 16 5 C 0.11 2.04 6.46 86.25 0.56 2.59 16 6 N -1.00 -22.78 3.22 -517.10 -1.67 -24.45 16 7 S 2.63 78.87 5.44 -56.49 -0.31 78.56 16 8 O -0.98 -34.31 16.72 -127.65 -2.13 -36.44 16 9 O -0.98 -34.73 16.97 -127.65 -2.17 -36.90 16 10 C -0.61 -19.15 6.18 71.98 0.44 -18.70 16 11 C -0.11 -4.39 5.16 30.59 0.16 -4.24 16 12 C 0.03 1.68 4.97 29.85 0.15 1.82 16 13 C -0.55 -31.77 9.11 25.60 0.23 -31.53 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 15 C 0.00 0.21 5.46 84.66 0.46 0.67 16 16 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 17 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.15 3.04 6.14 85.42 0.52 3.57 16 22 H 0.07 0.81 7.56 -2.38 -0.02 0.79 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.12 1.55 7.56 -2.91 -0.02 1.53 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.79 7.03 -2.39 -0.02 1.78 16 30 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 31 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.27 14.96 8.31 -92.70 -0.77 14.18 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 1.86 7.47 -2.38 -0.02 1.84 16 Total: -1.00 -72.52 324.95 0.65 -71.87 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.02 Total: 9.75 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 3.59 Total: -52.98 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.38 Total: -80.21 kcal Atomic # 8 Polarization: -69.04 SS G_CDS: -4.30 Total: -73.34 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 78.87 SS G_CDS: -0.31 Total: 78.56 kcal Total: -72.52 0.65 -71.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280849392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.055 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds