Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46533 * 191.64387 * 3 2 1 5 5 C 1.36747 * 119.99980 * 263.80796 * 4 3 2 6 6 H 1.07997 * 119.99904 * 199.94733 * 5 4 3 7 7 C 1.39073 * 119.99822 * 19.94992 * 5 4 3 8 8 N 1.31358 * 119.99954 * 21.80831 * 7 5 4 9 9 Si 1.86799 * 119.99881 * 201.81213 * 7 5 4 10 10 H 1.48506 * 109.47251 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47000 * 119.99916 * 9 7 5 12 12 H 1.48500 * 109.47074 * 240.00018 * 9 7 5 13 13 C 1.34771 * 119.99988 * 83.81449 * 4 3 2 14 14 O 1.21850 * 119.99703 * 179.97438 * 13 4 3 15 15 C 1.41333 * 120.00096 * 359.97438 * 13 4 3 16 16 C 1.35789 * 119.99885 * 180.02562 * 15 13 4 17 17 C 1.41520 * 119.99877 * 180.02562 * 16 15 13 18 18 C 1.38033 * 126.10900 * 179.43712 * 17 16 15 19 19 C 1.40295 * 106.52773 * 179.85089 * 18 17 16 20 20 C 1.35186 * 107.20893 * 0.40857 * 19 18 17 21 21 C 1.50691 * 125.47654 * 179.71941 * 20 19 18 22 22 C 1.52998 * 109.47341 * 90.00373 * 21 20 19 23 23 O 1.34045 * 109.04027 * 359.74625 * 20 19 18 24 24 H 4.40631 * 5.51426 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.46870 * 71.64627 * 3 2 1 26 26 H 1.08999 * 109.47628 * 311.64286 * 3 2 1 27 27 H 0.97010 * 119.99770 * 179.97438 * 8 7 5 28 28 H 1.07997 * 120.00017 * 0.02562 * 15 13 4 29 29 H 1.08002 * 120.00287 * 359.72092 * 16 15 13 30 30 H 1.08002 * 126.73853 * 359.96467 * 18 17 16 31 31 H 1.07989 * 126.39716 * 180.15905 * 19 18 17 32 32 H 1.09001 * 109.47115 * 210.00410 * 21 20 19 33 33 H 1.09002 * 109.47389 * 330.00280 * 21 20 19 34 34 H 1.08997 * 109.47432 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.47046 * 300.00079 * 22 21 20 36 36 H 1.09002 * 109.46955 * 59.99641 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3537 0.2788 5 6 3.4815 2.1812 -0.7528 6 1 4.1268 3.0281 -0.5717 7 6 3.0043 1.9322 -2.0352 8 7 1.9213 1.2082 -2.2039 9 14 3.9036 2.6272 -3.5177 10 1 5.0854 3.4020 -3.0613 11 1 4.3493 1.5135 -4.3931 12 1 2.9908 3.5189 -4.2770 13 6 3.2394 1.7829 1.5519 14 8 3.6454 2.9081 1.7838 15 6 2.8794 0.9278 2.6182 16 6 2.9855 1.3605 3.9009 17 6 2.6256 0.5041 4.9685 18 6 2.6934 0.8078 6.3133 19 6 2.2381 -0.3264 7.0021 20 6 1.9265 -1.2593 6.0747 21 6 1.4013 -2.6413 6.3664 22 6 -0.1275 -2.6065 6.4134 23 8 2.1604 -0.7574 4.8539 24 1 -1.0502 -0.0005 0.0001 25 1 3.0094 -0.3228 -0.9754 26 1 3.0097 -0.6820 0.7679 27 1 1.5883 1.0349 -3.0984 28 1 2.5200 -0.0696 2.4127 29 1 3.3493 2.3564 4.1066 30 1 3.0290 1.7370 6.7496 31 1 2.1561 -0.4356 8.0734 32 1 1.7252 -3.3260 5.5825 33 1 1.7868 -2.9811 7.3277 34 1 -0.5075 -3.6061 6.6240 35 1 -0.4514 -1.9217 7.1973 36 1 -0.5130 -2.2667 5.4521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281018685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = 59.646439 kcal Electronic energy + Delta-G solvation = -20004.977290 eV Core-core repulsion = 16844.568369 eV Total energy + Delta-G solvation = -3160.408921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.33131 -38.85890 -35.41274 -34.46851 -33.29081 -32.45373 -31.97694 -31.29208 -28.18265 -26.54130 -25.35800 -23.88837 -22.02690 -21.49731 -20.01454 -18.39782 -17.91970 -16.95034 -16.58632 -16.08589 -15.74530 -14.89301 -14.58586 -14.49184 -14.10368 -13.95251 -13.15847 -13.12931 -12.78587 -12.55628 -12.47832 -12.37728 -12.09452 -11.70644 -11.68566 -11.34795 -11.15099 -11.05775 -10.60210 -10.42458 -10.11247 -9.56787 -9.40925 -9.33927 -8.98117 -8.46565 -7.97056 -7.47541 -6.50560 -3.91583 0.94680 2.35389 3.02714 3.06208 3.17681 3.18928 3.25992 3.72419 3.99871 4.10256 4.37970 4.67050 4.86755 4.95708 5.01742 5.06775 5.12037 5.31976 5.38895 5.46420 5.62302 5.66041 5.70964 5.90891 5.95667 5.99469 6.06459 6.24565 6.44574 6.54601 6.61142 6.75210 6.88227 6.96927 7.38988 7.40148 7.98403 8.32246 8.78141 9.03635 9.21496 9.86885 10.48148 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027834 B = 0.004292 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.708899 B = 6521.676429 C = 7280.834241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.119 4.119 3 C 0.227 3.773 4 N -0.418 5.418 5 C -0.303 4.303 6 H 0.110 0.890 7 C 0.030 3.970 8 N -0.844 5.844 9 Si 0.925 3.075 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.457 3.543 14 O -0.595 6.595 15 C -0.142 4.142 16 C -0.071 4.071 17 C 0.034 3.966 18 C -0.200 4.200 19 C -0.206 4.206 20 C -0.019 4.019 21 C -0.042 4.042 22 C -0.151 4.151 23 O -0.165 6.165 24 H 0.200 0.800 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.272 0.728 28 H 0.118 0.882 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -9.178 12.215 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.120 4.120 3 C 0.104 3.896 4 N -0.134 5.134 5 C -0.431 4.431 6 H 0.128 0.872 7 C -0.176 4.176 8 N -0.479 5.479 9 Si 0.750 3.250 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.251 3.749 14 O -0.483 6.483 15 C -0.163 4.163 16 C -0.092 4.092 17 C -0.016 4.016 18 C -0.219 4.219 19 C -0.226 4.226 20 C -0.070 4.070 21 C -0.079 4.079 22 C -0.208 4.208 23 O -0.062 6.062 24 H 0.217 0.783 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.947 -8.860 11.796 14.881 hybrid contribution -0.111 0.353 -0.801 0.882 sum -2.058 -8.508 10.995 14.054 Atomic orbital electron populations 1.24268 0.95359 1.02021 1.05374 1.23036 0.94246 0.98425 0.96320 1.18324 0.84568 0.84766 1.01912 1.43812 1.52927 1.11277 1.05354 1.19859 1.27069 1.10546 0.85602 0.87237 1.25468 0.95015 0.97521 0.99636 1.70095 1.17227 1.37057 1.23571 0.85889 0.79846 0.78792 0.80436 1.18878 1.20356 1.20620 1.16651 0.87121 0.87939 0.83170 1.90671 1.52766 1.20975 1.83931 1.22442 0.99828 1.00083 0.93961 1.20385 1.01070 0.98183 0.89592 1.20040 1.03085 0.83304 0.95163 1.22137 1.07280 1.00597 0.91900 1.21365 1.07232 0.94055 0.99907 1.22512 1.05010 0.97519 0.82002 1.20058 0.96147 0.88951 1.02793 1.21799 0.94077 1.02080 1.02841 1.84056 1.64484 1.26473 1.31166 0.78294 0.87500 0.91390 0.91721 0.86445 0.82809 0.83225 0.83735 0.90127 0.89122 0.91799 0.92243 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.31 19.25 29.55 0.57 -4.74 16 2 C -0.12 -2.70 11.06 -37.12 -0.41 -3.11 16 3 C 0.23 5.08 4.79 -6.83 -0.03 5.05 16 4 N -0.42 -10.74 2.59 -121.28 -0.31 -11.05 16 5 C -0.30 -8.26 9.27 -15.05 -0.14 -8.40 16 6 H 0.11 3.13 7.42 -52.49 -0.39 2.74 16 7 C 0.03 0.77 4.83 -17.44 -0.08 0.69 16 8 N -0.84 -21.70 9.59 55.50 0.53 -21.17 16 9 Si 0.92 19.84 29.61 -169.99 -5.03 14.81 16 10 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.46 11.62 7.33 -15.09 -0.11 11.51 16 14 O -0.60 -16.94 15.77 5.05 0.08 -16.86 16 15 C -0.14 -3.00 8.52 -39.28 -0.33 -3.33 16 16 C -0.07 -1.34 9.39 -39.21 -0.37 -1.71 16 17 C 0.03 0.57 6.84 -38.41 -0.26 0.31 16 18 C -0.20 -2.90 10.90 -38.88 -0.42 -3.32 16 19 C -0.21 -2.65 10.76 -39.90 -0.43 -3.08 16 20 C -0.02 -0.26 6.56 -35.40 -0.23 -0.49 16 21 C -0.04 -0.40 6.46 -27.89 -0.18 -0.58 16 22 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 23 O -0.17 -2.75 10.18 4.62 0.05 -2.70 16 24 H 0.20 3.43 7.80 -54.08 -0.42 3.01 16 25 H 0.11 2.44 6.61 -51.93 -0.34 2.10 16 26 H 0.07 1.30 6.45 -51.93 -0.33 0.96 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.12 2.32 5.72 -52.49 -0.30 2.02 16 29 H 0.15 2.91 7.46 -52.49 -0.39 2.52 16 30 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -31.54 321.49 -6.19 -37.73 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.28 Total: 6.51 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.07 Total: -12.13 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.22 Total: -32.22 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.13 Total: -19.56 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.54 -6.19 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281018685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.377 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds