Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46533 * 191.64387 * 3 2 1 5 5 C 1.36747 * 119.99980 * 263.80796 * 4 3 2 6 6 H 1.07997 * 119.99904 * 199.94733 * 5 4 3 7 7 C 1.39073 * 119.99822 * 19.94992 * 5 4 3 8 8 N 1.31358 * 119.99954 * 21.80831 * 7 5 4 9 9 Si 1.86799 * 119.99881 * 201.81213 * 7 5 4 10 10 H 1.48506 * 109.47251 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47000 * 119.99916 * 9 7 5 12 12 H 1.48500 * 109.47074 * 240.00018 * 9 7 5 13 13 C 1.34771 * 119.99988 * 83.81449 * 4 3 2 14 14 O 1.21850 * 119.99703 * 179.97438 * 13 4 3 15 15 C 1.41333 * 120.00096 * 359.97438 * 13 4 3 16 16 C 1.35789 * 119.99885 * 180.02562 * 15 13 4 17 17 C 1.41520 * 119.99877 * 180.02562 * 16 15 13 18 18 C 1.38033 * 126.10900 * 179.43712 * 17 16 15 19 19 C 1.40295 * 106.52773 * 179.85089 * 18 17 16 20 20 C 1.35186 * 107.20893 * 0.40857 * 19 18 17 21 21 C 1.50691 * 125.47654 * 179.71941 * 20 19 18 22 22 C 1.52998 * 109.47341 * 90.00373 * 21 20 19 23 23 O 1.34045 * 109.04027 * 359.74625 * 20 19 18 24 24 H 4.40631 * 5.51426 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.46870 * 71.64627 * 3 2 1 26 26 H 1.08999 * 109.47628 * 311.64286 * 3 2 1 27 27 H 0.97010 * 119.99770 * 179.97438 * 8 7 5 28 28 H 1.07997 * 120.00017 * 0.02562 * 15 13 4 29 29 H 1.08002 * 120.00287 * 359.72092 * 16 15 13 30 30 H 1.08002 * 126.73853 * 359.96467 * 18 17 16 31 31 H 1.07989 * 126.39716 * 180.15905 * 19 18 17 32 32 H 1.09001 * 109.47115 * 210.00410 * 21 20 19 33 33 H 1.09002 * 109.47389 * 330.00280 * 21 20 19 34 34 H 1.08997 * 109.47432 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.47046 * 300.00079 * 22 21 20 36 36 H 1.09002 * 109.46955 * 59.99641 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3537 0.2788 5 6 3.4815 2.1812 -0.7528 6 1 4.1268 3.0281 -0.5717 7 6 3.0043 1.9322 -2.0352 8 7 1.9213 1.2082 -2.2039 9 14 3.9036 2.6272 -3.5177 10 1 5.0854 3.4020 -3.0613 11 1 4.3493 1.5135 -4.3931 12 1 2.9908 3.5189 -4.2770 13 6 3.2394 1.7829 1.5519 14 8 3.6454 2.9081 1.7838 15 6 2.8794 0.9278 2.6182 16 6 2.9855 1.3605 3.9009 17 6 2.6256 0.5041 4.9685 18 6 2.6934 0.8078 6.3133 19 6 2.2381 -0.3264 7.0021 20 6 1.9265 -1.2593 6.0747 21 6 1.4013 -2.6413 6.3664 22 6 -0.1275 -2.6065 6.4134 23 8 2.1604 -0.7574 4.8539 24 1 -1.0502 -0.0005 0.0001 25 1 3.0094 -0.3228 -0.9754 26 1 3.0097 -0.6820 0.7679 27 1 1.5883 1.0349 -3.0984 28 1 2.5200 -0.0696 2.4127 29 1 3.3493 2.3564 4.1066 30 1 3.0290 1.7370 6.7496 31 1 2.1561 -0.4356 8.0734 32 1 1.7252 -3.3260 5.5825 33 1 1.7868 -2.9811 7.3277 34 1 -0.5075 -3.6061 6.6240 35 1 -0.4514 -1.9217 7.1973 36 1 -0.5130 -2.2667 5.4521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281018685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = 41.950032 kcal Electronic energy + Delta-G solvation = -20005.744664 eV Core-core repulsion = 16844.568369 eV Total energy + Delta-G solvation = -3161.176295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.51657 -40.73767 -37.27595 -35.58546 -34.62780 -34.10691 -33.32499 -33.10385 -29.52234 -28.27882 -26.98009 -25.18099 -23.28610 -22.67393 -21.28211 -20.03012 -19.71496 -18.64267 -18.35309 -17.30562 -17.00971 -16.73053 -16.14536 -15.86206 -15.55300 -15.21224 -14.86126 -14.35031 -14.16691 -13.98332 -13.85552 -13.64679 -13.38383 -13.26283 -13.06175 -12.76214 -12.54921 -12.36489 -12.14120 -11.88264 -11.55323 -11.23539 -11.16255 -10.75952 -10.70462 -10.43352 -9.90551 -8.79829 -8.41053 -5.95774 -0.47695 1.14972 1.39459 1.41697 1.55909 1.77799 1.93974 2.00152 2.27589 2.34768 2.54407 3.09122 3.21526 3.71359 3.81717 3.92790 4.02221 4.12667 4.23827 4.37464 4.43131 4.57546 4.62753 4.74246 4.83094 4.88782 4.99012 5.02788 5.13537 5.25889 5.30245 5.34690 5.37017 5.40400 5.63436 6.01956 6.19655 6.39454 7.06904 7.09256 7.30899 7.93672 8.56857 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027834 B = 0.004292 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.708899 B = 6521.676429 C = 7280.834241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.158 4.158 3 C 0.232 3.768 4 N -0.434 5.434 5 C -0.351 4.351 6 H 0.080 0.920 7 C 0.004 3.996 8 N -0.861 5.861 9 Si 0.990 3.010 10 H -0.272 1.272 11 H -0.261 1.261 12 H -0.277 1.277 13 C 0.456 3.544 14 O -0.641 6.641 15 C -0.187 4.187 16 C -0.019 4.019 17 C -0.026 4.026 18 C -0.166 4.166 19 C -0.214 4.214 20 C -0.005 4.005 21 C -0.045 4.045 22 C -0.149 4.149 23 O -0.185 6.185 24 H 0.235 0.765 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.277 0.723 28 H 0.128 0.872 29 H 0.150 0.850 30 H 0.173 0.827 31 H 0.182 0.818 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -10.945 14.671 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.159 4.159 3 C 0.110 3.890 4 N -0.148 5.148 5 C -0.478 4.478 6 H 0.098 0.902 7 C -0.201 4.201 8 N -0.496 5.496 9 Si 0.813 3.187 10 H -0.197 1.197 11 H -0.186 1.186 12 H -0.203 1.203 13 C 0.251 3.749 14 O -0.533 6.533 15 C -0.208 4.208 16 C -0.041 4.041 17 C -0.075 4.075 18 C -0.185 4.185 19 C -0.233 4.233 20 C -0.057 4.057 21 C -0.082 4.082 22 C -0.206 4.206 23 O -0.082 6.082 24 H 0.251 0.749 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.168 0.832 30 H 0.190 0.810 31 H 0.200 0.800 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.936 -10.661 14.250 18.038 hybrid contribution 0.094 0.789 -1.098 1.355 sum -2.843 -9.873 13.153 16.690 Atomic orbital electron populations 1.25143 0.96340 1.00378 1.03883 1.23350 0.94924 0.99924 0.97739 1.18334 0.84902 0.83700 1.02076 1.43892 1.53607 1.12252 1.05084 1.19714 1.29171 1.11593 0.87360 0.90249 1.26158 0.95225 0.97546 1.01192 1.70169 1.17656 1.37565 1.24239 0.84941 0.78273 0.78414 0.77056 1.19650 1.18591 1.20295 1.17287 0.85658 0.87836 0.84113 1.90605 1.54799 1.23055 1.84828 1.22065 1.04866 1.00509 0.93371 1.20497 0.96108 0.97843 0.89634 1.19852 1.07866 0.84281 0.95471 1.22647 1.03263 1.01667 0.90906 1.21829 1.06838 0.92900 1.01684 1.23560 1.02042 0.98966 0.81114 1.20362 0.96644 0.86618 1.04595 1.21794 0.93309 1.03641 1.01871 1.84052 1.64763 1.26373 1.33042 0.74892 0.88690 0.88841 0.91321 0.85459 0.83215 0.80971 0.80036 0.89780 0.85848 0.89400 0.91790 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.99 19.25 74.32 1.43 -8.56 16 2 C -0.16 -7.33 11.06 31.13 0.34 -6.98 16 3 C 0.23 10.82 4.79 84.57 0.40 11.23 16 4 N -0.43 -23.54 2.59 -655.78 -1.70 -25.23 16 5 C -0.35 -20.32 9.27 84.13 0.78 -19.54 16 6 H 0.08 4.93 7.42 -2.91 -0.02 4.90 16 7 C 0.00 0.21 4.83 84.96 0.41 0.62 16 8 N -0.86 -45.25 9.59 21.69 0.21 -45.05 16 9 Si 0.99 41.91 29.61 68.60 2.03 43.94 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.46 24.54 7.33 85.00 0.62 25.16 16 14 O -0.64 -38.81 15.77 -4.83 -0.08 -38.88 16 15 C -0.19 -8.22 8.52 22.46 0.19 -8.03 16 16 C -0.02 -0.74 9.39 22.51 0.21 -0.53 16 17 C -0.03 -0.86 6.84 23.03 0.16 -0.70 16 18 C -0.17 -4.27 10.90 22.72 0.25 -4.02 16 19 C -0.21 -4.54 10.76 22.07 0.24 -4.30 16 20 C -0.01 -0.13 6.56 24.98 0.16 0.04 16 21 C -0.05 -0.67 6.46 29.84 0.19 -0.48 16 22 C -0.15 -2.05 9.89 71.98 0.71 -1.34 16 23 O -0.19 -5.86 10.18 -6.40 -0.07 -5.93 16 24 H 0.23 7.59 7.80 -4.41 -0.03 7.56 16 25 H 0.10 4.55 6.61 -2.39 -0.02 4.54 16 26 H 0.09 3.72 6.45 -2.39 -0.02 3.70 16 27 H 0.28 13.56 8.31 -92.70 -0.77 12.79 16 28 H 0.13 5.21 5.72 -2.91 -0.02 5.19 16 29 H 0.15 5.79 7.46 -2.91 -0.02 5.77 16 30 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.18 2.50 8.06 -2.92 -0.02 2.48 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -72.48 321.49 7.59 -64.90 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 1.08 Total: 23.69 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 6.11 Total: -17.43 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.49 Total: -70.28 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.14 Total: -44.81 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -72.48 7.59 -64.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281018685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.846 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds