Wall clock time and date at job start Mon Mar 30 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46886 * 249.51836 * 3 2 1 5 5 C 1.36899 * 119.99902 * 96.77604 * 4 3 2 6 6 H 1.08006 * 120.00101 * 157.47314 * 5 4 3 7 7 C 1.39020 * 120.00109 * 337.48056 * 5 4 3 8 8 N 1.31382 * 119.99760 * 355.40955 * 7 5 4 9 9 Si 1.86800 * 120.00208 * 175.41631 * 7 5 4 10 10 H 1.48506 * 109.47041 * 59.99722 * 9 7 5 11 11 H 1.48500 * 109.47323 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47307 * 299.99555 * 9 7 5 13 13 C 1.34773 * 120.00129 * 276.76975 * 4 3 2 14 14 O 1.21623 * 120.00366 * 184.19867 * 13 4 3 15 15 C 1.47498 * 120.00163 * 4.20884 * 13 4 3 16 16 C 1.39817 * 120.08740 * 304.88594 * 15 13 4 17 17 C 1.37668 * 119.90310 * 179.97438 * 16 15 13 18 18 C 1.39034 * 120.09502 * 0.02562 * 17 16 15 19 19 O 1.35708 * 119.90838 * 179.97438 * 18 17 16 20 20 C 1.42897 * 117.00079 * 359.97438 * 19 18 17 21 21 C 1.38989 * 120.18688 * 0.27430 * 18 17 16 22 22 C 1.37716 * 120.09151 * 359.44296 * 21 18 17 23 23 C 1.50706 * 120.04407 * 180.25427 * 22 21 18 24 24 H 4.40637 * 5.51393 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.46882 * 129.51792 * 3 2 1 26 26 H 1.09001 * 109.47231 * 9.52433 * 3 2 1 27 27 H 0.97008 * 119.99636 * 180.02562 * 8 7 5 28 28 H 1.07997 * 120.05397 * 0.02562 * 16 15 13 29 29 H 1.07993 * 119.95495 * 179.97438 * 17 16 15 30 30 H 1.08999 * 109.47214 * 300.00036 * 20 19 18 31 31 H 1.09003 * 109.47035 * 60.00034 * 20 19 18 32 32 H 1.08997 * 109.47487 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.95363 * 179.73011 * 21 18 17 34 34 H 1.08998 * 109.47251 * 273.78403 * 23 22 21 35 35 H 1.08998 * 109.47128 * 33.78394 * 23 22 21 36 36 H 1.08997 * 109.46847 * 153.78672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4842 1.2939 5 6 3.4945 -0.4091 2.2667 6 1 4.1732 -0.1084 3.0512 7 6 2.9870 -1.7031 2.2447 8 7 2.0927 -2.0428 1.3441 9 14 3.5764 -2.9590 3.4957 10 1 3.2676 -2.4757 4.8655 11 1 2.8869 -4.2530 3.2607 12 1 5.0429 -3.1464 3.3558 13 6 3.2284 1.8083 1.5265 14 8 3.7048 2.2099 2.5710 15 6 2.7536 2.7706 0.5144 16 6 3.2450 2.7121 -0.7932 17 6 2.7989 3.6118 -1.7349 18 6 1.8614 4.5778 -1.3871 19 8 1.4246 5.4631 -2.3183 20 6 1.9709 5.3439 -3.6333 21 6 1.3750 4.6434 -0.0867 22 6 1.8116 3.7436 0.8600 23 6 1.2791 3.8120 2.2682 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.6548 -0.7928 26 1 3.0098 -1.0127 -0.1700 27 1 1.7384 -2.9457 1.3290 28 1 3.9729 1.9618 -1.0644 29 1 3.1782 3.5677 -2.7451 30 1 3.0523 5.4734 -3.5906 31 1 1.7386 4.3577 -4.0352 32 1 1.5381 6.1094 -4.2773 33 1 0.6501 5.3981 0.1804 34 1 1.8722 4.5201 2.8469 35 1 0.2398 4.1397 2.2481 36 1 1.3403 2.8257 2.7281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281563836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:49 Heat of formation + Delta-G solvation = 29.186902 kcal Electronic energy + Delta-G solvation = -20985.340270 eV Core-core repulsion = 17823.610524 eV Total energy + Delta-G solvation = -3161.729746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11135 -38.77190 -36.77335 -35.15785 -32.35625 -31.96669 -31.17632 -30.20460 -27.66820 -26.38268 -26.33676 -24.73126 -22.61256 -21.23968 -19.31522 -17.84666 -17.56606 -16.78674 -16.44896 -15.97753 -15.66542 -14.95376 -14.29596 -14.14624 -14.05548 -13.57975 -13.25642 -13.10552 -12.93986 -12.35169 -12.16875 -12.02975 -11.85437 -11.66995 -11.39838 -11.38217 -11.05195 -10.67728 -10.56500 -10.47072 -10.36427 -9.40403 -9.27302 -8.79776 -8.51188 -8.42919 -7.88847 -7.73453 -6.31553 -3.93762 1.58148 1.65727 3.16937 3.22991 3.25962 3.36066 3.66123 3.82256 4.12584 4.18204 4.26200 4.92697 4.94334 5.06600 5.09460 5.12086 5.19159 5.39523 5.46738 5.54970 5.64584 5.72428 5.86192 6.07537 6.17482 6.24772 6.36177 6.46402 6.60801 6.68877 6.89832 6.99375 7.02696 7.13061 7.50735 7.56499 8.05200 8.41818 8.88761 9.09398 9.31446 9.88183 10.66099 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.005605 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.503534 B = 4994.081088 C = 5319.825491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.101 4.101 3 C 0.219 3.781 4 N -0.432 5.432 5 C -0.307 4.307 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.872 5.872 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.577 6.577 15 C -0.124 4.124 16 C -0.061 4.061 17 C -0.216 4.216 18 C 0.127 3.873 19 O -0.320 6.320 20 C 0.028 3.972 21 C -0.157 4.157 22 C -0.007 4.007 23 C -0.111 4.111 24 H 0.197 0.803 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.270 0.730 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 8.255 -9.250 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.102 4.102 3 C 0.097 3.903 4 N -0.149 5.149 5 C -0.435 4.435 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.511 5.511 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.282 3.718 14 O -0.462 6.462 15 C -0.128 4.128 16 C -0.079 4.079 17 C -0.235 4.235 18 C 0.082 3.918 19 O -0.234 6.234 20 C -0.067 4.067 21 C -0.176 4.176 22 C -0.008 4.008 23 C -0.168 4.168 24 H 0.214 0.786 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.559 8.374 -8.746 12.208 hybrid contribution -0.020 -1.001 0.202 1.022 sum -1.579 7.373 -8.543 11.395 Atomic orbital electron populations 1.24224 0.95360 1.06315 1.03272 1.23164 0.94306 0.95423 0.97342 1.18750 0.84436 1.01890 0.85253 1.43589 1.55036 1.03762 1.12517 1.19673 1.25848 0.91024 1.06910 0.87885 1.25408 0.95320 0.98684 0.97935 1.69944 1.26992 1.20238 1.33905 0.85927 0.78733 0.78990 0.80635 1.19815 1.20942 1.19823 1.17892 0.84679 0.82401 0.86825 1.90627 1.49422 1.78337 1.27770 1.20057 0.99744 0.98505 0.94464 1.21098 0.98178 0.96945 0.91718 1.21020 1.02650 0.99288 1.00557 1.19040 0.94081 0.89595 0.89122 1.85983 1.64805 1.52944 1.19636 1.23007 0.99056 1.02664 0.81958 1.20092 1.04781 1.02400 0.90295 1.19624 0.93380 0.92076 0.95725 1.20791 0.99612 1.04179 0.92209 0.78587 0.91755 0.85989 0.91940 0.85147 0.85609 0.92757 0.92660 0.88634 0.85346 0.90646 0.92040 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.89 19.25 29.55 0.57 -5.32 16 2 C -0.10 -2.33 11.29 -37.12 -0.42 -2.75 16 3 C 0.22 4.98 4.86 -6.83 -0.03 4.94 16 4 N -0.43 -10.98 2.60 -119.13 -0.31 -11.29 16 5 C -0.31 -8.35 9.33 -15.00 -0.14 -8.49 16 6 H 0.10 2.91 7.35 -52.48 -0.39 2.53 16 7 C 0.03 0.77 5.22 -17.45 -0.09 0.68 16 8 N -0.87 -22.58 8.88 55.50 0.49 -22.09 16 9 Si 0.93 20.42 29.56 -169.99 -5.02 15.40 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.49 12.28 5.93 -12.49 -0.07 12.20 16 14 O -0.58 -16.02 15.73 5.26 0.08 -15.94 16 15 C -0.12 -2.59 4.82 -104.96 -0.51 -3.09 16 16 C -0.06 -1.08 7.81 -39.20 -0.31 -1.38 16 17 C -0.22 -3.30 9.01 -39.49 -0.36 -3.65 16 18 C 0.13 1.99 6.70 -39.01 -0.26 1.73 16 19 O -0.32 -4.41 10.48 -18.83 -0.20 -4.61 16 20 C 0.03 0.27 9.81 101.05 0.99 1.26 16 21 C -0.16 -2.61 9.64 -39.49 -0.38 -2.99 16 22 C -0.01 -0.13 5.91 -104.24 -0.62 -0.75 16 23 C -0.11 -2.03 9.24 36.01 0.33 -1.70 16 24 H 0.20 3.50 7.80 -54.09 -0.42 3.07 16 25 H 0.06 1.26 4.16 -51.93 -0.22 1.05 16 26 H 0.12 2.91 6.20 -51.93 -0.32 2.59 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.13 2.13 6.65 -52.49 -0.35 1.79 16 29 H 0.13 1.51 6.28 -52.49 -0.33 1.18 16 30 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 31 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.08 1.68 6.67 -51.93 -0.35 1.33 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -31.37 308.53 -5.59 -36.96 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.99 Total: 6.23 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.29 Total: -9.31 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.18 Total: -33.38 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.11 Total: -20.54 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.37 -5.59 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281563836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.147 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds