Wall clock time and date at job start Mon Mar 30 2020 01:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46886 * 249.51836 * 3 2 1 5 5 C 1.36899 * 119.99902 * 96.77604 * 4 3 2 6 6 H 1.08006 * 120.00101 * 157.47314 * 5 4 3 7 7 C 1.39020 * 120.00109 * 337.48056 * 5 4 3 8 8 N 1.31382 * 119.99760 * 355.40955 * 7 5 4 9 9 Si 1.86800 * 120.00208 * 175.41631 * 7 5 4 10 10 H 1.48506 * 109.47041 * 59.99722 * 9 7 5 11 11 H 1.48500 * 109.47323 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47307 * 299.99555 * 9 7 5 13 13 C 1.34773 * 120.00129 * 276.76975 * 4 3 2 14 14 O 1.21623 * 120.00366 * 184.19867 * 13 4 3 15 15 C 1.47498 * 120.00163 * 4.20884 * 13 4 3 16 16 C 1.39817 * 120.08740 * 304.88594 * 15 13 4 17 17 C 1.37668 * 119.90310 * 179.97438 * 16 15 13 18 18 C 1.39034 * 120.09502 * 0.02562 * 17 16 15 19 19 O 1.35708 * 119.90838 * 179.97438 * 18 17 16 20 20 C 1.42897 * 117.00079 * 359.97438 * 19 18 17 21 21 C 1.38989 * 120.18688 * 0.27430 * 18 17 16 22 22 C 1.37716 * 120.09151 * 359.44296 * 21 18 17 23 23 C 1.50706 * 120.04407 * 180.25427 * 22 21 18 24 24 H 4.40637 * 5.51393 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.46882 * 129.51792 * 3 2 1 26 26 H 1.09001 * 109.47231 * 9.52433 * 3 2 1 27 27 H 0.97008 * 119.99636 * 180.02562 * 8 7 5 28 28 H 1.07997 * 120.05397 * 0.02562 * 16 15 13 29 29 H 1.07993 * 119.95495 * 179.97438 * 17 16 15 30 30 H 1.08999 * 109.47214 * 300.00036 * 20 19 18 31 31 H 1.09003 * 109.47035 * 60.00034 * 20 19 18 32 32 H 1.08997 * 109.47487 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.95363 * 179.73011 * 21 18 17 34 34 H 1.08998 * 109.47251 * 273.78403 * 23 22 21 35 35 H 1.08998 * 109.47128 * 33.78394 * 23 22 21 36 36 H 1.08997 * 109.46847 * 153.78672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4842 1.2939 5 6 3.4945 -0.4091 2.2667 6 1 4.1732 -0.1084 3.0512 7 6 2.9870 -1.7031 2.2447 8 7 2.0927 -2.0428 1.3441 9 14 3.5764 -2.9590 3.4957 10 1 3.2676 -2.4757 4.8655 11 1 2.8869 -4.2530 3.2607 12 1 5.0429 -3.1464 3.3558 13 6 3.2284 1.8083 1.5265 14 8 3.7048 2.2099 2.5710 15 6 2.7536 2.7706 0.5144 16 6 3.2450 2.7121 -0.7932 17 6 2.7989 3.6118 -1.7349 18 6 1.8614 4.5778 -1.3871 19 8 1.4246 5.4631 -2.3183 20 6 1.9709 5.3439 -3.6333 21 6 1.3750 4.6434 -0.0867 22 6 1.8116 3.7436 0.8600 23 6 1.2791 3.8120 2.2682 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.6548 -0.7928 26 1 3.0098 -1.0127 -0.1700 27 1 1.7384 -2.9457 1.3290 28 1 3.9729 1.9618 -1.0644 29 1 3.1782 3.5677 -2.7451 30 1 3.0523 5.4734 -3.5906 31 1 1.7386 4.3577 -4.0352 32 1 1.5381 6.1094 -4.2773 33 1 0.6501 5.3981 0.1804 34 1 1.8722 4.5201 2.8469 35 1 0.2398 4.1397 2.2481 36 1 1.3403 2.8257 2.7281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281563836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:48 Heat of formation + Delta-G solvation = 10.530650 kcal Electronic energy + Delta-G solvation = -20986.149266 eV Core-core repulsion = 17823.610524 eV Total energy + Delta-G solvation = -3162.538741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.49600 -40.29386 -38.17174 -37.07607 -34.09616 -33.48416 -32.99365 -31.55659 -28.88149 -28.16007 -27.48251 -26.55814 -24.06576 -22.65521 -20.91034 -19.67846 -18.81260 -18.46808 -18.11623 -17.30655 -16.83144 -16.61576 -16.06930 -15.64125 -15.51126 -15.20227 -14.65854 -14.55642 -14.26116 -14.01855 -13.90745 -13.41760 -13.28572 -13.02745 -12.92904 -12.82628 -12.68796 -12.53095 -12.16888 -11.80898 -11.72464 -11.28828 -11.07041 -10.61011 -10.37463 -9.85553 -9.74180 -9.10204 -8.28019 -5.99364 0.19437 0.34390 1.39904 1.41295 1.51268 1.89684 2.12797 2.32020 2.35742 2.44011 2.72936 3.07164 3.23821 3.73985 3.85368 3.92478 4.04901 4.17543 4.34100 4.42746 4.47336 4.54723 4.65882 4.71748 4.74212 4.79508 4.93683 5.05900 5.10361 5.27222 5.29974 5.42338 5.45170 5.60865 5.68483 6.07403 6.44021 6.46221 7.10660 7.15767 7.38126 7.95410 8.66911 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.005605 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.503534 B = 4994.081088 C = 5319.825491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.139 4.139 3 C 0.224 3.776 4 N -0.443 5.443 5 C -0.345 4.345 6 H 0.077 0.923 7 C 0.001 3.999 8 N -0.880 5.880 9 Si 0.991 3.009 10 H -0.281 1.281 11 H -0.271 1.271 12 H -0.265 1.265 13 C 0.489 3.511 14 O -0.622 6.622 15 C -0.159 4.159 16 C -0.064 4.064 17 C -0.206 4.206 18 C 0.139 3.861 19 O -0.326 6.326 20 C 0.015 3.985 21 C -0.159 4.159 22 C -0.022 4.022 23 C -0.106 4.106 24 H 0.231 0.769 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.273 0.727 28 H 0.138 0.862 29 H 0.164 0.836 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 9.081 -11.622 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.140 4.140 3 C 0.103 3.897 4 N -0.160 5.160 5 C -0.473 4.473 6 H 0.095 0.905 7 C -0.202 4.202 8 N -0.518 5.518 9 Si 0.815 3.185 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.190 1.190 13 C 0.280 3.720 14 O -0.510 6.510 15 C -0.162 4.162 16 C -0.083 4.083 17 C -0.224 4.224 18 C 0.092 3.908 19 O -0.239 6.239 20 C -0.079 4.079 21 C -0.177 4.177 22 C -0.023 4.023 23 C -0.162 4.162 24 H 0.247 0.753 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.155 0.845 29 H 0.182 0.818 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.630 9.199 -11.170 14.707 hybrid contribution 0.252 -1.130 0.800 1.407 sum -2.379 8.069 -10.370 13.353 Atomic orbital electron populations 1.25074 0.96334 1.04822 1.01679 1.23455 0.94963 0.96819 0.98811 1.18734 0.84756 1.01453 0.84796 1.43749 1.55144 1.03964 1.13130 1.19619 1.27322 0.92549 1.07790 0.90488 1.26085 0.95099 0.99522 0.99446 1.70063 1.26855 1.20542 1.34343 0.85030 0.78739 0.76931 0.77816 1.20625 1.19541 1.19011 1.18569 0.83417 0.82829 0.87207 1.90562 1.51271 1.79154 1.30025 1.19839 1.02322 0.99175 0.94881 1.21189 0.98269 0.97889 0.90908 1.21332 1.01690 0.97823 1.01568 1.19144 0.92995 0.89301 0.89310 1.85999 1.64878 1.52030 1.21028 1.23415 1.00117 1.04418 0.79984 1.20256 1.04978 1.02097 0.90383 1.19739 0.93615 0.92524 0.96406 1.20722 1.01662 1.01758 0.92088 0.75286 0.88975 0.87673 0.91715 0.84473 0.81848 0.91486 0.91637 0.85893 0.83098 0.90435 0.88930 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.93 19.25 74.32 1.43 -9.50 16 2 C -0.14 -6.43 11.29 31.13 0.35 -6.08 16 3 C 0.22 10.39 4.86 84.58 0.41 10.80 16 4 N -0.44 -23.55 2.60 -649.07 -1.69 -25.24 16 5 C -0.35 -19.72 9.33 84.09 0.78 -18.94 16 6 H 0.08 4.67 7.35 -2.91 -0.02 4.65 16 7 C 0.00 0.05 5.22 84.95 0.44 0.49 16 8 N -0.88 -46.05 8.88 21.68 0.19 -45.86 16 9 Si 0.99 42.59 29.56 68.60 2.03 44.62 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 C 0.49 25.58 5.93 86.69 0.51 26.09 16 14 O -0.62 -36.87 15.73 -4.10 -0.06 -36.93 16 15 C -0.16 -6.71 4.82 -20.08 -0.10 -6.81 16 16 C -0.06 -2.20 7.81 22.52 0.18 -2.02 16 17 C -0.21 -5.62 9.01 22.33 0.20 -5.41 16 18 C 0.14 3.90 6.70 22.64 0.15 4.05 16 19 O -0.33 -7.63 10.48 -90.28 -0.95 -8.57 16 20 C 0.01 0.21 9.81 113.37 1.11 1.32 16 21 C -0.16 -4.92 9.64 22.33 0.22 -4.71 16 22 C -0.02 -0.82 5.91 -19.62 -0.12 -0.94 16 23 C -0.11 -3.94 9.24 71.24 0.66 -3.28 16 24 H 0.23 7.58 7.80 -4.41 -0.03 7.54 16 25 H 0.09 3.63 4.16 -2.39 -0.01 3.62 16 26 H 0.11 5.15 6.20 -2.39 -0.01 5.14 16 27 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 28 H 0.14 4.39 6.65 -2.91 -0.02 4.37 16 29 H 0.16 3.16 6.28 -2.91 -0.02 3.14 16 30 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 31 H 0.06 0.82 7.65 -2.39 -0.02 0.80 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 36 H 0.03 1.58 6.67 -2.39 -0.02 1.56 16 Total: -1.00 -71.19 308.53 6.86 -64.34 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 1.10 Total: 22.58 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 6.24 Total: -14.93 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -1.50 Total: -71.10 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.01 Total: -45.50 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.19 6.86 -64.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281563836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.870 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds