Wall clock time and date at job start Mon Mar 30 2020 01:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46924 * 343.00709 * 3 2 1 5 5 C 1.37096 * 119.99605 * 264.38684 * 4 3 2 6 6 H 1.08007 * 119.99620 * 196.17546 * 5 4 3 7 7 C 1.38943 * 120.00089 * 16.17887 * 5 4 3 8 8 N 1.31415 * 120.00162 * 20.85402 * 7 5 4 9 9 Si 1.86803 * 119.99902 * 200.84595 * 7 5 4 10 10 H 1.48504 * 109.46606 * 84.94575 * 9 7 5 11 11 H 1.48493 * 109.47333 * 204.94278 * 9 7 5 12 12 H 1.48496 * 109.47363 * 324.94923 * 9 7 5 13 13 C 1.34774 * 120.00085 * 84.39363 * 4 3 2 14 14 O 1.21289 * 120.00085 * 180.02562 * 13 4 3 15 15 C 1.50708 * 120.00216 * 359.97438 * 13 4 3 16 16 O 1.42890 * 109.47253 * 180.02562 * 15 13 4 17 17 C 1.35905 * 117.00044 * 180.02562 * 16 15 13 18 18 C 1.38733 * 120.05425 * 359.72289 * 17 16 15 19 19 C 1.38141 * 119.94370 * 179.76653 * 18 17 16 20 20 C 1.38267 * 120.05660 * 0.50988 * 19 18 17 21 21 C 1.50702 * 119.94744 * 179.76284 * 20 19 18 22 22 C 1.38273 * 120.11012 * 359.74502 * 20 19 18 23 23 C 1.38146 * 120.05195 * 0.02562 * 22 20 19 24 24 H 4.40641 * 5.51359 * 179.97438 * 4 1 2 25 25 H 1.08990 * 109.47307 * 223.00694 * 3 2 1 26 26 H 1.08999 * 109.46989 * 103.00128 * 3 2 1 27 27 H 0.96997 * 119.99526 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.46573 * 59.99847 * 15 13 4 29 29 H 1.08999 * 109.47177 * 300.01123 * 15 13 4 30 30 H 1.07996 * 120.02701 * 0.02562 * 18 17 16 31 31 H 1.07997 * 119.97356 * 180.25624 * 19 18 17 32 32 H 1.08995 * 109.47189 * 269.98038 * 21 20 19 33 33 H 1.09004 * 109.46754 * 29.98182 * 21 20 19 34 34 H 1.09000 * 109.46821 * 149.97621 * 21 20 19 35 35 H 1.08001 * 119.97197 * 179.97438 * 22 20 19 36 36 H 1.08002 * 120.02464 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3201 0.4037 5 6 3.4729 -1.5556 1.7113 6 1 4.0688 -2.4191 1.9679 7 6 3.0489 -0.6835 2.7064 8 7 2.0206 0.1065 2.4933 9 14 3.9405 -0.6342 4.3472 10 1 5.1115 0.2736 4.2470 11 1 3.0167 -0.1362 5.3977 12 1 4.4022 -2.0005 4.7010 13 6 3.2524 -2.3035 -0.5104 14 8 3.6568 -3.3971 -0.1761 15 6 2.8804 -2.0447 -1.9477 16 8 3.0900 -3.2318 -2.7151 17 6 2.8011 -3.1679 -4.0416 18 6 2.3203 -1.9887 -4.5920 19 6 2.0321 -1.9250 -5.9415 20 6 2.2123 -3.0382 -6.7415 21 6 1.8920 -2.9675 -8.2124 22 6 2.6864 -4.2163 -6.1943 23 6 2.9806 -4.2837 -4.8462 24 1 -1.0498 -0.0003 0.0003 25 1 3.0090 0.7522 0.7009 26 1 3.0092 0.2320 -1.0013 27 1 1.7249 0.7155 3.1879 28 1 3.5006 -1.2409 -2.3444 29 1 1.8310 -1.7558 -2.0051 30 1 2.1756 -1.1201 -3.9668 31 1 1.6617 -1.0061 -6.3713 32 1 0.8506 -3.2475 -8.3713 33 1 2.0536 -1.9509 -8.5709 34 1 2.5400 -3.6528 -8.7587 35 1 2.8259 -5.0846 -6.8211 36 1 3.3504 -5.2042 -4.4192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281621492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:52 Heat of formation + Delta-G solvation = 22.045348 kcal Electronic energy + Delta-G solvation = -20083.997134 eV Core-core repulsion = 16921.957708 eV Total energy + Delta-G solvation = -3162.039427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.06163 -38.67937 -37.22839 -35.18111 -32.29180 -31.92618 -31.33035 -30.97019 -28.42426 -26.53574 -26.00644 -24.39223 -22.65283 -21.17685 -19.32081 -18.13279 -17.93463 -16.72761 -16.15597 -15.74280 -15.57058 -15.25229 -14.58875 -14.24861 -14.10014 -13.95358 -13.64331 -13.41773 -13.13884 -12.63081 -12.43524 -12.24791 -11.89202 -11.80981 -11.62847 -11.48469 -11.06188 -10.72137 -10.64597 -10.51994 -10.36499 -9.46147 -9.37683 -8.99297 -8.94892 -8.50189 -7.97848 -7.90485 -6.41211 -3.94054 1.39956 1.50092 3.11017 3.16449 3.23337 3.33780 3.60550 3.81035 3.83263 3.93997 4.14672 4.77708 4.87086 4.91223 4.96724 5.02006 5.22710 5.32674 5.36549 5.42716 5.50790 5.53178 5.62015 5.72280 5.76051 5.86178 6.09128 6.16693 6.35310 6.47525 6.63100 6.66485 6.86439 6.93359 7.49622 7.60537 7.95103 8.33686 8.70110 9.03480 9.23558 9.77102 10.59600 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.004043 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.605482 B = 6924.489582 C = 7529.985945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.120 4.120 3 C 0.228 3.772 4 N -0.435 5.435 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.863 5.863 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.450 3.550 14 O -0.561 6.561 15 C 0.051 3.949 16 O -0.286 6.286 17 C 0.134 3.866 18 C -0.209 4.209 19 C -0.079 4.079 20 C -0.138 4.138 21 C -0.106 4.106 22 C -0.082 4.082 23 C -0.151 4.151 24 H 0.201 0.799 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.270 0.730 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 1.086 -15.488 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.122 4.122 3 C 0.105 3.895 4 N -0.155 5.155 5 C -0.442 4.442 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.501 5.501 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.238 3.762 14 O -0.443 6.443 15 C -0.028 4.028 16 O -0.198 6.198 17 C 0.087 3.913 18 C -0.228 4.228 19 C -0.097 4.097 20 C -0.138 4.138 21 C -0.162 4.162 22 C -0.100 4.100 23 C -0.170 4.170 24 H 0.218 0.782 25 H 0.135 0.865 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.143 0.857 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.072 0.515 -15.061 15.108 hybrid contribution -0.209 0.541 0.977 1.136 sum -1.281 1.055 -14.084 14.182 Atomic orbital electron populations 1.24323 0.95416 1.01669 1.05880 1.23167 0.94350 0.98855 0.95786 1.18363 0.84359 0.88245 0.98582 1.43624 1.56142 1.07755 1.07970 1.19715 1.31243 1.12402 0.80798 0.87498 1.25307 0.95166 0.97090 0.99683 1.70080 1.20803 1.24116 1.35077 0.85943 0.79055 0.79000 0.80767 1.20158 1.21046 1.19359 1.19478 0.85668 0.85269 0.85818 1.90568 1.49850 1.23265 1.80651 1.22613 1.01655 0.86437 0.92096 1.86194 1.81072 1.36311 1.16185 1.19209 0.94214 0.94149 0.83691 1.21326 1.06708 0.98025 0.96710 1.20787 0.98254 0.97946 0.92756 1.19769 1.03652 0.94129 0.96283 1.20676 1.01496 1.02258 0.91798 1.20792 0.97959 0.97316 0.93896 1.20451 1.05654 0.97814 0.93033 0.78239 0.86502 0.92200 0.91966 0.90600 0.90165 0.85316 0.86029 0.91701 0.91934 0.91913 0.85665 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.10 19.25 29.55 0.57 -4.53 16 2 C -0.12 -2.60 10.95 -37.12 -0.41 -3.01 16 3 C 0.23 4.86 4.91 -6.83 -0.03 4.83 16 4 N -0.43 -10.85 2.60 -117.93 -0.31 -11.16 16 5 C -0.31 -8.55 9.35 -14.94 -0.14 -8.69 16 6 H 0.11 3.07 7.36 -52.48 -0.39 2.68 16 7 C 0.03 0.81 4.90 -17.47 -0.09 0.73 16 8 N -0.86 -22.06 9.39 55.50 0.52 -21.54 16 9 Si 0.93 20.13 29.60 -169.99 -5.03 15.10 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.45 11.18 7.64 -10.98 -0.08 11.10 16 14 O -0.56 -16.17 16.14 -14.36 -0.23 -16.41 16 15 C 0.05 0.99 3.82 36.01 0.14 1.13 16 16 O -0.29 -5.78 9.67 -39.35 -0.38 -6.16 16 17 C 0.13 2.23 6.69 -39.22 -0.26 1.96 16 18 C -0.21 -2.99 9.04 -39.43 -0.36 -3.35 16 19 C -0.08 -0.97 9.69 -39.61 -0.38 -1.35 16 20 C -0.14 -1.58 5.88 -104.60 -0.62 -2.20 16 21 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 22 C -0.08 -0.98 9.69 -39.60 -0.38 -1.36 16 23 C -0.15 -2.20 9.99 -39.43 -0.39 -2.60 16 24 H 0.20 3.25 7.80 -54.10 -0.42 2.83 16 25 H 0.12 2.62 6.34 -51.93 -0.33 2.29 16 26 H 0.06 1.03 6.67 -51.93 -0.35 0.69 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 29 H 0.08 1.47 7.03 -51.93 -0.37 1.11 16 30 H 0.13 1.71 6.30 -52.49 -0.33 1.38 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -31.88 315.78 -6.95 -38.83 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.21 Total: 4.42 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.08 Total: -7.85 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.21 Total: -32.70 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.61 Total: -22.56 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.88 -6.95 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281621492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.880 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds