Wall clock time and date at job start Mon Mar 30 2020 01:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47148 * 264.46309 * 3 2 1 5 5 C 1.36903 * 120.00376 * 83.23664 * 4 3 2 6 6 H 1.07993 * 120.00578 * 169.28959 * 5 4 3 7 7 C 1.39024 * 119.99552 * 349.28405 * 5 4 3 8 8 N 1.31384 * 120.00221 * 3.55300 * 7 5 4 9 9 Si 1.86800 * 120.00113 * 183.54919 * 7 5 4 10 10 H 1.48503 * 109.47209 * 60.00078 * 9 7 5 11 11 H 1.48492 * 109.47313 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46722 * 300.00485 * 9 7 5 13 13 C 1.34780 * 119.99894 * 263.23069 * 4 3 2 14 14 O 1.21621 * 120.00037 * 182.38660 * 13 4 3 15 15 C 1.47495 * 120.00108 * 2.39387 * 13 4 3 16 16 C 1.39815 * 120.09540 * 42.87936 * 15 13 4 17 17 C 1.37671 * 119.90381 * 179.97438 * 16 15 13 18 18 C 1.39027 * 120.09585 * 0.02562 * 17 16 15 19 19 O 1.35715 * 119.90464 * 179.97438 * 18 17 16 20 20 C 1.38986 * 120.18685 * 0.25645 * 18 17 16 21 21 C 1.50696 * 119.95156 * 179.69864 * 20 18 17 22 22 C 1.53003 * 109.47716 * 280.00167 * 21 20 18 23 23 C 1.37715 * 120.09438 * 359.44564 * 20 18 17 24 24 H 4.40637 * 5.51447 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47427 * 144.46297 * 3 2 1 26 26 H 1.09003 * 109.47367 * 24.46259 * 3 2 1 27 27 H 0.96998 * 120.00607 * 180.02562 * 8 7 5 28 28 H 1.08000 * 120.04842 * 359.95570 * 16 15 13 29 29 H 1.08000 * 119.94599 * 179.97438 * 17 16 15 30 30 H 0.96695 * 113.99887 * 90.00028 * 19 18 17 31 31 H 1.08997 * 109.47370 * 40.00349 * 21 20 18 32 32 H 1.09004 * 109.47277 * 159.99929 * 21 20 18 33 33 H 1.08990 * 109.47377 * 179.97438 * 22 21 20 34 34 H 1.09006 * 109.46634 * 300.00412 * 22 21 20 35 35 H 1.09004 * 109.46942 * 59.99557 * 22 21 20 36 36 H 1.07997 * 120.04225 * 180.27341 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1341 1.3748 5 6 3.2313 -0.9709 2.1771 6 1 3.7484 -0.9077 3.1231 7 6 2.6641 -2.1744 1.7741 8 7 2.0960 -2.2701 0.5933 9 14 2.7097 -3.6557 2.9113 10 1 2.0017 -3.3310 4.1756 11 1 2.0430 -4.8069 2.2516 12 1 4.1214 -4.0066 3.2105 13 6 3.4881 1.3449 1.8496 14 8 3.9343 1.4496 2.9762 15 6 3.3340 2.5429 1.0032 16 6 2.1766 2.7168 0.2384 17 6 2.0366 3.8368 -0.5499 18 6 3.0444 4.7939 -0.5865 19 8 2.9026 5.8962 -1.3654 20 6 4.1991 4.6221 0.1677 21 6 5.2910 5.6595 0.1188 22 6 6.1309 5.4570 -1.1440 23 6 4.3446 3.5077 0.9636 24 1 -1.0500 0.0002 0.0000 25 1 3.0090 0.8371 -0.5973 26 1 3.0098 -0.9346 -0.4256 27 1 1.6999 -3.1097 0.3121 28 1 1.3936 1.9734 0.2657 29 1 1.1431 3.9716 -1.1413 30 1 2.4807 6.6423 -0.9178 31 1 4.8463 6.6546 0.1036 32 1 5.9271 5.5593 0.9982 33 1 6.9203 6.2077 -1.1795 34 1 6.5756 4.4619 -1.1288 35 1 5.4947 5.5573 -2.0234 36 1 5.2403 3.3772 1.5527 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291688988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:59 Heat of formation + Delta-G solvation = 1.615151 kcal Electronic energy + Delta-G solvation = -20766.794669 eV Core-core repulsion = 17603.869323 eV Total energy + Delta-G solvation = -3162.925346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44117 -40.09302 -37.44111 -37.21420 -35.12256 -33.84921 -33.23258 -31.25219 -30.18576 -28.32230 -26.74095 -24.84835 -24.13518 -22.47943 -20.85982 -19.83034 -19.34118 -18.44185 -18.10473 -17.04025 -16.87883 -16.44182 -16.04285 -15.66972 -15.43209 -14.90484 -14.71082 -14.54353 -14.49116 -14.08527 -13.74238 -13.22956 -13.14141 -13.09668 -12.88738 -12.67112 -12.46747 -12.35649 -12.14152 -11.82632 -11.48052 -11.27347 -11.02505 -10.60224 -10.51285 -9.99719 -9.84830 -9.45266 -8.26636 -5.99137 -0.05506 0.34199 1.36852 1.39607 1.49572 1.86705 2.02262 2.27485 2.33545 2.64742 3.07413 3.11499 3.29332 3.77912 3.82416 3.89898 4.02641 4.23023 4.37912 4.50657 4.55448 4.60257 4.64804 4.85492 5.04789 5.07323 5.10648 5.17912 5.28046 5.39893 5.42015 5.42611 5.46561 5.52489 5.81093 5.97744 6.40180 6.88565 7.04478 7.07337 7.31728 7.87072 8.59122 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027413 B = 0.005343 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.150335 B = 5238.781837 C = 5857.876125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.136 4.136 3 C 0.223 3.777 4 N -0.438 5.438 5 C -0.344 4.344 6 H 0.080 0.920 7 C 0.003 3.997 8 N -0.876 5.876 9 Si 0.995 3.005 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.269 1.269 13 C 0.466 3.534 14 O -0.633 6.633 15 C -0.130 4.130 16 C -0.099 4.099 17 C -0.143 4.143 18 C 0.128 3.872 19 O -0.491 6.491 20 C -0.113 4.113 21 C -0.073 4.073 22 C -0.142 4.142 23 C -0.072 4.072 24 H 0.237 0.763 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.275 0.725 28 H 0.132 0.868 29 H 0.154 0.846 30 H 0.410 0.590 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 12.804 -7.205 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.138 4.138 3 C 0.101 3.899 4 N -0.154 5.154 5 C -0.471 4.471 6 H 0.098 0.902 7 C -0.199 4.199 8 N -0.514 5.514 9 Si 0.818 3.182 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.194 1.194 13 C 0.258 3.742 14 O -0.522 6.522 15 C -0.134 4.134 16 C -0.118 4.118 17 C -0.162 4.162 18 C 0.083 3.917 19 O -0.305 6.305 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.199 4.199 23 C -0.091 4.091 24 H 0.254 0.746 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.086 0.914 28 H 0.150 0.850 29 H 0.172 0.828 30 H 0.270 0.730 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.051 12.299 -7.227 14.265 hybrid contribution -0.466 -0.951 1.145 1.560 sum -0.517 11.348 -6.082 12.885 Atomic orbital electron populations 1.25188 0.96295 1.05583 1.00224 1.23194 0.94708 0.95880 1.00026 1.18881 0.85146 1.02984 0.82874 1.43848 1.53935 1.05773 1.11826 1.19725 1.35987 0.88448 1.02972 0.90173 1.26048 0.94587 1.01026 0.98265 1.70038 1.35688 1.27392 1.18301 0.84970 0.78774 0.76715 0.77713 1.20404 1.19083 1.19406 1.18631 0.84585 0.83772 0.87251 1.90554 1.53086 1.86441 1.22161 1.19985 0.97583 0.95938 0.99860 1.21739 0.96886 0.98423 0.94757 1.21492 1.00312 0.94169 1.00184 1.18341 0.92423 0.89399 0.91540 1.84705 1.83439 1.23022 1.39304 1.20323 0.97524 0.96965 0.96556 1.20453 0.94277 0.96778 0.99511 1.21700 0.99683 1.01583 0.96925 1.20984 0.97742 0.92553 0.97803 0.74615 0.90555 0.86207 0.91444 0.85014 0.82806 0.72975 0.88809 0.90888 0.90530 0.94021 0.92539 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.97 18.88 74.32 1.40 -8.57 16 2 C -0.14 -6.09 8.69 31.12 0.27 -5.82 16 3 C 0.22 10.51 4.76 84.57 0.40 10.91 16 4 N -0.44 -23.66 2.60 -649.08 -1.69 -25.34 16 5 C -0.34 -19.79 9.48 84.09 0.80 -18.99 16 6 H 0.08 4.92 7.20 -2.91 -0.02 4.90 16 7 C 0.00 0.14 5.38 84.95 0.46 0.60 16 8 N -0.88 -44.55 8.08 21.68 0.18 -44.37 16 9 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.47 24.91 7.23 86.68 0.63 25.53 16 14 O -0.63 -38.33 16.56 -4.10 -0.07 -38.39 16 15 C -0.13 -5.56 4.97 -20.08 -0.10 -5.66 16 16 C -0.10 -3.67 7.57 22.52 0.17 -3.50 16 17 C -0.14 -4.12 9.97 22.32 0.22 -3.90 16 18 C 0.13 3.33 6.68 22.64 0.15 3.48 16 19 O -0.49 -9.38 12.61 -90.36 -1.14 -10.52 16 20 C -0.11 -3.19 5.14 -19.81 -0.10 -3.30 16 21 C -0.07 -1.54 5.72 29.85 0.17 -1.37 16 22 C -0.14 -2.84 9.89 71.98 0.71 -2.13 16 23 C -0.07 -2.61 9.27 22.52 0.21 -2.40 16 24 H 0.24 7.01 7.80 -4.42 -0.03 6.97 16 25 H 0.08 3.26 5.65 -2.39 -0.01 3.25 16 26 H 0.12 6.02 5.96 -2.39 -0.01 6.01 16 27 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 28 H 0.13 5.19 4.00 -2.91 -0.01 5.18 16 29 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.41 3.71 9.06 -74.06 -0.67 3.04 16 31 H 0.09 1.53 7.85 -2.39 -0.02 1.51 16 32 H 0.07 1.51 7.99 -2.39 -0.02 1.49 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.06 1.18 8.04 -2.39 -0.02 1.16 16 36 H 0.12 4.49 8.03 -2.91 -0.02 4.47 16 Total: -1.00 -70.23 308.58 5.14 -65.09 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.44 Total: 24.21 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.39 Total: -15.10 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -1.51 Total: -69.72 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -1.21 Total: -48.92 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.23 5.14 -65.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291688988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.705 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds