Wall clock time and date at job start Mon Mar 30 2020 01:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47120 * 2 1 4 4 C 1.37777 * 119.95498 * 265.02524 * 3 2 1 5 5 C 1.39717 * 119.90343 * 179.97438 * 4 3 2 6 6 C 1.43200 * 120.09084 * 180.02562 * 5 4 3 7 7 N 5.95658 * 108.65292 * 322.94851 * 2 1 3 8 8 C 1.39759 * 119.81438 * 359.97438 * 5 4 3 9 9 C 1.37729 * 119.89782 * 359.74347 * 8 5 4 10 10 C 1.38920 * 119.95220 * 84.99693 * 3 2 1 11 11 O 1.35809 * 119.90699 * 0.02562 * 10 3 2 12 12 C 1.34295 * 116.99981 * 83.51537 * 11 10 3 13 13 O 1.20831 * 119.99854 * 5.71504 * 12 11 10 14 14 C 1.50694 * 119.99987 * 185.72043 * 12 11 10 15 15 C 1.53002 * 109.47209 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47195 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99647 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00030 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99935 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47021 * 89.99898 * 20 18 16 22 22 H 1.48502 * 109.47192 * 209.99812 * 20 18 16 23 23 H 1.48499 * 109.47435 * 329.99972 * 20 18 16 24 24 H 1.08997 * 109.46797 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47306 * 299.99500 * 1 2 3 26 26 H 1.08996 * 109.47389 * 59.99931 * 1 2 3 27 27 H 1.08994 * 109.47281 * 240.00037 * 2 1 3 28 28 H 1.08997 * 109.47508 * 119.99530 * 2 1 3 29 29 H 1.08002 * 120.04619 * 359.95050 * 4 3 2 30 30 H 1.08001 * 120.04473 * 180.02562 * 8 5 4 31 31 H 1.08010 * 119.94855 * 180.25426 * 9 8 5 32 32 H 1.09005 * 109.47222 * 300.00206 * 14 12 11 33 33 H 1.09007 * 109.46923 * 59.99845 * 14 12 11 34 34 H 1.09001 * 109.47070 * 300.00261 * 15 14 12 35 35 H 1.09002 * 109.46541 * 60.00408 * 15 14 12 36 36 H 0.97000 * 120.00300 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3592 2.0349 -1.1892 5 6 2.8243 3.3524 -1.1880 6 6 3.1648 3.9947 -2.4218 7 7 3.4351 4.5042 -3.4005 8 6 2.9554 4.0419 0.0205 9 6 2.6208 3.4223 1.2042 10 6 2.1646 2.1097 1.1991 11 8 1.8412 1.5008 2.3691 12 6 2.7795 0.7209 2.9302 13 8 3.8871 0.6679 2.4503 14 6 2.4509 -0.0884 4.1582 15 6 3.6849 -0.8829 4.5907 16 6 3.3565 -1.6917 5.8192 17 1 2.3667 -1.6434 6.2488 18 6 4.3198 -2.4923 6.3953 19 7 5.5255 -2.5498 5.8731 20 14 3.9129 -3.4942 7.9184 21 1 3.4020 -4.8279 7.5116 22 1 5.1374 -3.6632 8.7415 23 1 2.8760 -2.7881 8.7130 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 2.2565 1.4985 -2.1210 30 1 3.3142 5.0606 0.0258 31 1 2.7179 3.9558 2.1383 32 1 2.1482 0.5805 4.9639 33 1 1.6366 -0.7770 3.9324 34 1 3.9871 -1.5518 3.7849 35 1 4.4994 -0.1945 4.8164 36 1 6.2031 -3.1133 6.2782 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292425120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:58 Heat of formation + Delta-G solvation = -43.487908 kcal Electronic energy + Delta-G solvation = -19829.567901 eV Core-core repulsion = 16664.686739 eV Total energy + Delta-G solvation = -3164.881162 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34429 -39.19345 -37.06415 -36.24514 -34.35210 -33.69274 -31.46462 -30.84867 -29.64479 -26.42552 -24.48194 -24.02863 -22.24675 -21.80044 -20.19496 -18.52618 -18.03754 -17.06777 -16.98001 -15.84278 -15.13915 -14.83945 -14.60285 -14.37123 -14.31186 -14.04004 -13.83169 -13.34073 -13.26630 -13.11395 -12.74422 -12.40494 -12.30819 -12.11117 -11.83349 -11.50627 -11.34751 -11.10430 -11.01874 -10.71215 -10.63687 -10.19412 -10.16119 -9.75580 -9.27431 -9.21047 -8.82838 -8.44540 -6.08151 -4.13703 0.36054 1.00436 2.40842 2.44422 2.55701 3.10748 3.27495 3.34401 3.36747 3.60309 3.62641 4.37930 4.40343 4.49101 4.77147 4.88105 4.98257 5.17841 5.25112 5.27600 5.37351 5.54112 5.67937 5.73499 5.79481 5.90896 5.95857 5.97547 6.04837 6.11710 6.20892 6.30402 6.63760 6.78436 7.22089 7.57484 7.62106 7.89393 8.11625 8.27972 8.93051 9.51039 11.02682 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032048 B = 0.003529 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.478578 B = 7933.257779 C = 8246.563676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.088 4.088 4 C -0.055 4.055 5 C -0.035 4.035 6 C 0.261 3.739 7 N -0.421 5.421 8 C -0.060 4.060 9 C -0.121 4.121 10 C 0.129 3.871 11 O -0.305 6.305 12 C 0.456 3.544 13 O -0.482 6.482 14 C -0.101 4.101 15 C 0.033 3.967 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.888 5.888 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 9.247 -10.674 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.075 4.075 5 C -0.039 4.039 6 C -0.055 4.055 7 N -0.097 5.097 8 C -0.080 4.080 9 C -0.139 4.139 10 C 0.087 3.913 11 O -0.222 6.222 12 C 0.300 3.700 13 O -0.365 6.365 14 C -0.138 4.138 15 C -0.004 4.004 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.526 5.526 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.108 9.947 -12.320 18.267 hybrid contribution -0.088 -0.679 1.158 1.345 sum -9.195 9.269 -11.161 17.177 Atomic orbital electron populations 1.21737 0.93836 1.02282 1.02382 1.20532 0.96795 0.91285 1.03798 1.20026 0.99718 0.97309 0.91796 1.20896 0.96174 0.92440 0.98014 1.15991 1.06391 0.94225 0.87256 1.25632 0.93500 0.93476 0.92843 1.81255 1.09084 1.08530 1.10801 1.20979 0.97148 0.99919 0.89997 1.21186 0.98975 0.94492 0.99248 1.18693 0.96516 0.91467 0.84673 1.84702 1.45048 1.58575 1.33860 1.25325 0.82486 0.76515 0.85696 1.90697 1.22605 1.60901 1.62286 1.21866 1.04682 0.97463 0.89805 1.19050 0.90180 0.94538 0.96642 1.21116 0.97920 1.26381 1.11434 0.92223 1.25013 0.94945 0.96810 0.97483 1.69984 1.03115 1.39097 1.40439 0.86538 0.77882 0.80468 0.82777 1.20567 1.21164 1.19753 0.91915 0.91865 0.92602 0.90298 0.90571 0.84372 0.84286 0.83986 0.88520 0.88526 0.95497 0.95475 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.16 0.37 -0.98 16 2 C -0.09 -0.97 5.77 -27.88 -0.16 -1.13 16 3 C -0.09 -1.04 5.13 -104.54 -0.54 -1.57 16 4 C -0.05 -0.55 9.38 -39.20 -0.37 -0.91 16 5 C -0.04 -0.35 5.74 -106.85 -0.61 -0.97 16 6 C 0.26 2.87 15.33 -22.47 -0.34 2.53 16 7 N -0.42 -5.49 18.54 41.84 0.78 -4.72 16 8 C -0.06 -0.56 9.75 -39.20 -0.38 -0.95 16 9 C -0.12 -1.33 9.97 -39.50 -0.39 -1.73 16 10 C 0.13 1.70 4.92 -39.06 -0.19 1.51 16 11 O -0.30 -4.48 9.46 -23.34 -0.22 -4.71 16 12 C 0.46 8.07 6.58 36.00 0.24 8.31 16 13 O -0.48 -10.10 15.73 -18.75 -0.29 -10.40 16 14 C -0.10 -1.86 5.75 -27.88 -0.16 -2.02 16 15 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 16 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 28 H 0.08 1.02 6.58 -51.93 -0.34 0.68 16 29 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -31.37 326.68 -6.70 -38.07 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.52 Total: -3.42 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -3.08 Total: -10.08 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 1.51 Total: -30.10 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.52 Total: -15.10 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.37 -6.70 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292425120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.418 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds