Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46967 * 168.28241 * 3 2 1 5 5 C 1.52998 * 109.47062 * 48.27877 * 3 2 1 6 6 N 1.46499 * 109.47201 * 288.28045 * 3 2 1 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 3 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 3 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 3 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 4.44648 * 5.63368 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47286 * 179.97438 * 4 3 2 26 26 H 1.08994 * 109.46975 * 299.99911 * 4 3 2 27 27 H 1.09003 * 109.46921 * 60.00003 * 4 3 2 28 28 H 1.08991 * 109.47344 * 299.99819 * 5 3 2 29 29 H 1.09004 * 109.46805 * 60.00774 * 5 3 2 30 30 H 1.09000 * 109.46843 * 179.97438 * 5 3 2 31 31 H 0.97003 * 120.00039 * 0.02562 * 6 3 2 32 32 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 33 33 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 34 34 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 35 35 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 36 36 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4133 -0.2930 5 6 3.1564 -0.9591 -1.0767 6 7 3.1345 -0.4324 1.3115 7 6 4.4596 -0.5086 1.5456 8 8 5.2496 -0.2174 0.6683 9 6 4.9516 -0.9441 2.8665 10 6 4.0478 -1.2789 3.8773 11 6 4.5137 -1.6857 5.1091 12 6 5.8759 -1.7638 5.3508 13 6 6.7809 -1.4350 4.3619 14 6 6.3298 -1.0237 3.1150 15 8 7.2167 -0.7009 2.1424 16 6 8.5210 -0.6880 2.4834 17 1 8.8246 -1.0069 3.4695 18 6 9.4730 -0.2649 1.5676 19 7 9.1034 0.1230 0.3666 20 14 11.2802 -0.2477 2.0398 21 1 11.7119 -1.6230 2.3966 22 1 12.0867 0.2431 0.8934 23 1 11.4789 0.6514 3.2049 24 1 -1.0502 -0.0004 0.0003 25 1 4.2453 1.4140 -0.2925 26 1 2.7918 1.7355 -1.2687 27 1 2.7916 2.0970 0.4742 28 1 2.7936 -1.9654 -0.8679 29 1 2.7930 -0.6368 -2.0525 30 1 4.2464 -0.9582 -1.0769 31 1 2.5043 -0.6643 2.0115 32 1 2.9852 -1.2239 3.6924 33 1 3.8137 -1.9439 5.8898 34 1 6.2316 -2.0831 6.3193 35 1 7.8410 -1.4981 4.5582 36 1 9.7691 0.4192 -0.2737 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297620610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = 25.238767 kcal Electronic energy + Delta-G solvation = -20644.270458 eV Core-core repulsion = 17482.369509 eV Total energy + Delta-G solvation = -3161.900950 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.83909 -38.55703 -36.40473 -35.85934 -32.46404 -32.30472 -31.26767 -29.60066 -28.89890 -27.01038 -25.39350 -23.71207 -22.35452 -21.32725 -19.52100 -18.59945 -17.93965 -17.22145 -16.18341 -15.53387 -14.73415 -14.43018 -14.39863 -14.27533 -13.83237 -13.65036 -13.63046 -13.07663 -12.87863 -12.49972 -11.91605 -11.74392 -11.70917 -11.65201 -11.35204 -11.09937 -11.06650 -10.87029 -10.79398 -10.55516 -10.47609 -10.36481 -9.54198 -8.87296 -8.72115 -8.56762 -8.27013 -7.30821 -6.44409 -4.04080 1.71533 2.32372 2.55687 2.78458 3.12118 3.14075 3.16397 3.74211 3.86386 3.93863 4.23940 4.64008 5.06905 5.15742 5.17921 5.39526 5.46178 5.52037 5.68524 5.76499 5.90588 5.90922 6.08117 6.12906 6.14084 6.16339 6.55333 6.59667 6.64516 6.69226 6.92517 6.99399 7.06736 7.24123 7.29403 7.50805 7.69644 7.92410 8.14273 8.95339 9.09183 9.67362 10.69269 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.005915 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.436535 B = 4732.205585 C = 6079.337704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.289 3.711 4 C -0.160 4.160 5 C -0.160 4.160 6 N -0.737 5.737 7 C 0.560 3.440 8 O -0.495 6.495 9 C -0.227 4.227 10 C -0.038 4.038 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.123 6.123 16 C -0.404 4.404 17 H 0.093 0.907 18 C 0.046 3.954 19 N -0.832 5.832 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.219 0.781 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.393 0.607 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 -1.210 2.970 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.179 4.179 3 C 0.203 3.797 4 C -0.218 4.218 5 C -0.218 4.218 6 N -0.393 5.393 7 C 0.350 3.650 8 O -0.369 6.369 9 C -0.232 4.232 10 C -0.057 4.057 11 C -0.250 4.250 12 C -0.069 4.069 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.021 6.021 16 C -0.480 4.480 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.464 5.464 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.236 0.764 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.228 0.772 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.141 -0.824 1.789 11.314 hybrid contribution 0.208 -0.178 0.785 0.832 sum -10.933 -1.001 2.574 11.276 Atomic orbital electron populations 1.24887 0.95710 1.01453 0.99240 1.23101 0.93997 0.99758 1.01042 1.17017 0.81886 0.95868 0.84905 1.22234 1.04868 0.93595 1.01124 1.22230 1.04816 0.98026 0.96723 1.46073 1.07479 1.72076 1.13635 1.18161 0.81026 0.77729 0.88072 1.90880 1.54333 1.46668 1.45026 1.18824 0.91261 1.17907 0.95200 1.20776 0.97219 0.95162 0.92558 1.20461 0.95260 1.11764 0.97501 1.20897 0.93106 0.95343 0.97574 1.21155 1.00605 1.09873 0.94087 1.19258 0.89075 0.90692 0.87949 1.84169 1.15846 1.70910 1.31148 1.21443 0.79278 1.46228 1.01044 0.88971 1.25362 1.00150 0.95800 0.94900 1.70106 1.34864 1.37118 1.04269 0.85810 0.80281 0.79098 0.78410 1.19389 1.20166 1.19393 0.76392 0.88595 0.92039 0.92628 0.92627 0.92033 0.88644 0.77228 0.87113 0.87301 0.87197 0.85075 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 19.25 29.55 0.57 -1.55 16 2 C -0.18 -2.41 11.89 -37.12 -0.44 -2.85 16 3 C 0.29 4.56 0.97 -134.61 -0.13 4.43 16 4 C -0.16 -2.59 8.36 37.16 0.31 -2.28 16 5 C -0.16 -2.57 8.36 37.16 0.31 -2.25 16 6 N -0.74 -12.43 5.04 -51.26 -0.26 -12.69 16 7 C 0.56 12.07 7.18 -12.47 -0.09 11.98 16 8 O -0.49 -12.76 11.37 -16.57 -0.19 -12.94 16 9 C -0.23 -4.90 5.89 -104.81 -0.62 -5.52 16 10 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 11 C -0.23 -3.80 10.03 -39.61 -0.40 -4.20 16 12 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 13 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 14 C 0.19 4.67 6.66 -38.60 -0.26 4.41 16 15 O -0.12 -3.56 7.84 -21.08 -0.17 -3.72 16 16 C -0.40 -11.30 9.49 30.90 0.29 -11.01 16 17 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 18 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 19 N -0.83 -24.70 13.67 55.48 0.76 -23.94 16 20 Si 0.94 20.34 29.55 -169.99 -5.02 15.31 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H 0.22 1.47 7.80 -54.08 -0.42 1.05 16 25 H 0.10 1.88 6.16 -51.93 -0.32 1.56 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.85 6.17 -51.93 -0.32 1.53 16 31 H 0.39 5.61 6.48 -40.82 -0.26 5.34 16 32 H 0.11 1.51 6.40 -52.49 -0.34 1.18 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -32.74 311.91 -5.76 -38.50 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.90 Total: 10.23 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.68 Total: -15.45 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.50 Total: -36.63 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.35 Total: -16.67 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.74 -5.76 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297620610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.735 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds