Wall clock time and date at job start Mon Mar 30 2020 01:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37860 * 119.65756 * 2 1 4 4 C 1.38883 * 119.96108 * 179.97438 * 3 2 1 5 5 O 1.34834 * 133.42350 * 179.97438 * 4 3 2 6 6 C 1.34441 * 110.89714 * 179.97438 * 5 4 3 7 7 C 1.33989 * 110.16321 * 0.02562 * 6 5 4 8 8 C 1.50704 * 126.91139 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47122 * 265.00170 * 8 7 6 10 10 O 1.21290 * 120.00228 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99500 * 180.02562 * 9 8 7 12 12 C 1.37104 * 119.99372 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00567 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99542 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99950 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00097 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46787 * 90.00271 * 16 14 12 18 18 H 1.48497 * 109.47495 * 210.00189 * 16 14 12 19 19 H 1.48499 * 109.47259 * 330.00347 * 16 14 12 20 20 C 1.40508 * 119.31960 * 0.02562 * 4 3 2 21 21 C 1.39385 * 120.15378 * 359.97438 * 20 4 3 22 22 C 1.37758 * 119.60224 * 0.02562 * 21 20 4 23 23 C 1.50705 * 119.86291 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47575 * 270.02201 * 1 2 3 25 25 H 1.09000 * 109.46944 * 30.02446 * 1 2 3 26 26 H 1.08998 * 109.46992 * 150.02086 * 1 2 3 27 27 H 1.08004 * 120.01729 * 0.02562 * 3 2 1 28 28 H 1.08004 * 124.92309 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.46797 * 25.00519 * 8 7 6 30 30 H 1.09002 * 109.46997 * 144.99634 * 8 7 6 31 31 H 0.96995 * 120.00031 * 359.97438 * 11 9 8 32 32 H 0.96997 * 120.00107 * 179.97438 * 15 14 12 33 33 H 1.08005 * 120.19720 * 179.97438 * 21 20 4 34 34 H 1.08996 * 109.46954 * 90.00045 * 23 22 21 35 35 H 1.08999 * 109.46530 * 209.99917 * 23 22 21 36 36 H 1.09003 * 109.47098 * 329.99864 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1891 1.1980 0.0000 4 6 3.5779 1.2054 0.0005 5 8 4.4995 2.1895 0.0002 6 6 5.7441 1.6811 0.0016 7 6 5.6959 0.3421 0.0023 8 6 6.8676 -0.6058 0.0034 9 6 7.1809 -1.0187 -1.4116 10 8 6.5183 -0.5856 -2.3306 11 7 8.1974 -1.8693 -1.6559 12 6 8.4828 -2.2446 -2.9434 13 1 7.8929 -1.8590 -3.7616 14 6 9.5311 -3.1211 -3.1953 15 7 9.8044 -3.4813 -4.4292 16 14 10.5520 -3.7876 -1.7800 17 1 9.9452 -5.0486 -1.2828 18 1 11.9349 -4.0555 -2.2502 19 1 10.5874 -2.7887 -0.6818 20 6 4.2724 -0.0161 0.0005 21 6 3.5708 -1.2205 0.0005 22 6 2.1933 -1.2055 0.0000 23 6 1.4288 -2.5043 0.0006 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6438 2.1303 0.0004 28 1 6.6514 2.2670 0.0013 29 1 7.7356 -0.1099 0.4379 30 1 6.6203 -1.4884 0.5933 31 1 8.7275 -2.2154 -0.9210 32 1 10.5364 -4.0928 -4.6051 33 1 4.1039 -2.1597 0.0001 34 1 1.2441 -2.8166 1.0283 35 1 0.4777 -2.3661 -0.5137 36 1 2.0116 -3.2692 -0.5126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299488691.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:59 Heat of formation + Delta-G solvation = -39.707525 kcal Electronic energy + Delta-G solvation = -20149.483241 eV Core-core repulsion = 16984.766009 eV Total energy + Delta-G solvation = -3164.717232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.37784 -40.22314 -39.50925 -36.12953 -34.95371 -33.77298 -33.14192 -32.63109 -29.56766 -27.93190 -27.23555 -26.39654 -23.43126 -22.02876 -21.78154 -21.00958 -20.03565 -18.13518 -17.81188 -17.54537 -17.00013 -16.68688 -16.24952 -15.78107 -15.38874 -15.24488 -14.98494 -14.85013 -14.58579 -14.23136 -13.85065 -13.56877 -13.47314 -13.25883 -13.05426 -12.94013 -12.57798 -12.41953 -12.32420 -12.16494 -11.99203 -11.75240 -11.52931 -10.92251 -10.41003 -10.26637 -9.30015 -8.97282 -8.42480 -6.03961 -0.02330 0.36763 1.30062 1.35159 1.35872 1.45121 1.89631 1.94044 2.22667 2.65190 3.06361 3.13706 3.52298 3.64554 3.89133 3.95150 4.10078 4.22997 4.26244 4.39620 4.48419 4.59256 4.60721 4.74419 4.78186 4.85215 4.94349 4.94952 5.14887 5.23588 5.27635 5.40340 5.47257 5.55941 5.63971 5.80083 5.93416 6.22689 6.57287 6.86173 7.37690 7.95110 8.75370 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.004429 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.486646 B = 6320.338039 C = 6897.565987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 C -0.116 4.116 4 C 0.021 3.979 5 O -0.204 6.204 6 C 0.012 3.988 7 C -0.173 4.173 8 C -0.052 4.052 9 C 0.452 3.548 10 O -0.621 6.621 11 N -0.589 5.589 12 C -0.331 4.331 13 H 0.051 0.949 14 C -0.014 4.014 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.228 1.228 20 C -0.139 4.139 21 C -0.091 4.091 22 C -0.108 4.108 23 C -0.110 4.110 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.151 0.849 28 H 0.240 0.760 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.391 0.609 32 H 0.279 0.721 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 5.021 17.435 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.026 4.026 5 O -0.106 6.106 6 C -0.053 4.053 7 C -0.175 4.175 8 C -0.092 4.092 9 C 0.240 3.760 10 O -0.507 6.507 11 N -0.230 5.230 12 C -0.460 4.460 13 H 0.070 0.930 14 C -0.213 4.213 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.182 1.182 18 H -0.200 1.200 19 H -0.151 1.151 20 C -0.140 4.140 21 C -0.109 4.109 22 C -0.108 4.108 23 C -0.167 4.167 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.169 0.831 28 H 0.256 0.744 29 H 0.151 0.849 30 H 0.133 0.867 31 H 0.227 0.773 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.853 5.466 16.670 22.353 hybrid contribution 1.293 -0.610 -0.259 1.453 sum -12.560 4.857 16.411 21.229 Atomic orbital electron populations 1.20922 0.87495 1.04248 1.03907 1.19897 0.97999 0.90524 0.98358 1.20055 0.87574 1.00142 1.05619 1.19966 0.92058 0.85712 1.04818 1.83944 1.14837 1.34899 1.76925 1.24303 0.86228 0.93595 1.01126 1.20739 0.92767 0.94703 1.09259 1.19914 0.96780 0.99855 0.92615 1.20942 0.81566 0.81480 0.92022 1.90563 1.52805 1.58802 1.48485 1.42032 1.30596 1.43022 1.07355 1.19000 1.15742 1.26793 0.84432 0.93034 1.26139 0.98181 0.96546 1.00421 1.69808 1.31224 1.34809 1.21712 0.85361 0.77852 0.80037 0.78263 1.18159 1.19966 1.15110 1.20060 0.93368 0.94812 1.05751 1.20583 0.94210 0.96168 0.99980 1.19994 0.92545 0.96926 1.01355 1.20881 1.00133 0.92112 1.03528 0.89134 0.90359 0.89662 0.83097 0.74391 0.84860 0.86716 0.77267 0.91103 0.86171 0.89412 0.89204 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.58 71.23 0.68 -0.90 16 2 C -0.07 -1.61 5.88 -19.84 -0.12 -1.72 16 3 C -0.12 -3.11 9.69 22.33 0.22 -2.90 16 4 C 0.02 0.71 7.41 22.98 0.17 0.88 16 5 O -0.20 -6.69 10.58 -9.11 -0.10 -6.78 16 6 C 0.01 0.35 11.89 66.85 0.79 1.15 16 7 C -0.17 -5.94 4.85 -18.59 -0.09 -6.03 16 8 C -0.05 -1.65 6.25 29.10 0.18 -1.47 16 9 C 0.45 20.94 7.78 87.65 0.68 21.62 16 10 O -0.62 -36.02 15.61 -3.06 -0.05 -36.07 16 11 N -0.59 -28.06 5.09 -306.98 -1.56 -29.63 16 12 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16 13 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 14 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 15 N -0.93 -56.84 13.96 21.66 0.30 -56.53 16 16 Si 0.97 38.68 27.74 68.60 1.90 40.58 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 20 C -0.14 -4.98 6.38 -20.21 -0.13 -5.11 16 21 C -0.09 -2.99 9.74 22.43 0.22 -2.77 16 22 C -0.11 -2.86 5.88 -19.86 -0.12 -2.98 16 23 C -0.11 -2.08 9.59 71.24 0.68 -1.40 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 26 H 0.08 1.04 5.91 -2.39 -0.01 1.03 16 27 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 28 H 0.24 5.04 8.06 -2.91 -0.02 5.01 16 29 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.39 15.22 5.76 -92.71 -0.53 14.68 16 32 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.32 5.91 -2.39 -0.01 1.31 16 36 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 Total: -1.00 -82.95 310.46 5.52 -77.44 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.52 Total: 31.74 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.50 Total: -20.74 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.26 Total: -86.16 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.14 Total: -42.86 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Total: -82.95 5.52 -77.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299488691.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.730 kcal (2) G-P(sol) polarization free energy of solvation -82.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds