Wall clock time and date at job start Mon Mar 30 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37833 * 120.07345 * 2 1 4 4 C 1.38786 * 120.74436 * 179.97438 * 3 2 1 5 5 C 1.36659 * 120.44648 * 359.96007 * 4 3 2 6 6 C 1.39666 * 119.71009 * 0.02562 * 5 4 3 7 7 C 1.46255 * 134.19865 * 179.97438 * 6 5 4 8 8 C 1.35803 * 106.07758 * 180.02562 * 7 6 5 9 9 C 1.46977 * 125.12497 * 179.97438 * 8 7 6 10 10 O 1.21660 * 120.00253 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00088 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99910 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47129 * 324.99754 * 12 11 9 14 14 C 1.52997 * 109.47473 * 85.00011 * 12 11 9 15 15 C 1.50699 * 109.46939 * 205.00060 * 12 11 9 16 16 H 1.08003 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00161 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00079 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 119.99984 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47308 * 89.99475 * 19 17 15 21 21 H 1.48501 * 109.47369 * 209.99550 * 19 17 15 22 22 H 1.48502 * 109.47235 * 329.99718 * 19 17 15 23 23 O 1.34943 * 109.74923 * 0.22751 * 8 7 6 24 24 C 1.34716 * 110.86237 * 359.61367 * 23 8 7 25 25 H 1.09008 * 109.47133 * 90.00033 * 1 2 3 26 26 H 1.09000 * 109.47095 * 209.99438 * 1 2 3 27 27 H 1.08994 * 109.47106 * 329.99496 * 1 2 3 28 28 H 1.08004 * 119.62633 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.78095 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.15043 * 180.02562 * 5 4 3 31 31 H 1.07991 * 126.95834 * 0.05526 * 7 6 5 32 32 H 0.96994 * 120.00115 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47153 * 59.99757 * 14 12 11 34 34 H 1.09001 * 109.46832 * 299.99948 * 14 12 11 35 35 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 36 36 H 0.96999 * 119.99874 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1928 0.0000 4 6 3.5854 1.2090 0.0005 5 6 4.2917 0.0391 0.0019 6 6 3.6109 -1.1804 0.0022 7 6 4.0294 -2.5818 0.0030 8 6 2.8867 -3.3156 0.0023 9 6 2.8247 -4.7841 0.0023 10 8 3.8517 -5.4363 0.0033 11 7 1.6301 -5.4081 0.0010 12 6 1.5683 -6.8718 0.0015 13 1 2.3948 -7.2706 -0.5868 14 6 1.6706 -7.3862 1.4388 15 6 0.2613 -7.3196 -0.6004 16 1 -0.4522 -6.5871 -0.9481 17 6 -0.0237 -8.6644 -0.7072 18 7 -1.1645 -9.0551 -1.2321 19 14 1.2099 -9.9312 -0.1052 20 1 0.9438 -10.2419 1.3223 21 1 1.0816 -11.1703 -0.9137 22 1 2.5852 -9.3887 -0.2456 23 8 1.8168 -2.4933 -0.0039 24 6 2.2035 -1.2028 0.0010 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6528 2.1253 -0.0004 29 1 4.1109 2.1526 0.0001 30 1 5.3715 0.0573 0.0027 31 1 5.0421 -2.9570 0.0044 32 1 0.8113 -4.8882 -0.0002 33 1 0.8442 -6.9875 2.0271 34 1 2.6160 -7.0623 1.8741 35 1 1.6242 -8.4752 1.4392 36 1 -1.3652 -10.0012 -1.3069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299647518.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:08 Heat of formation + Delta-G solvation = -9.891590 kcal Electronic energy + Delta-G solvation = -20126.749032 eV Core-core repulsion = 16963.324715 eV Total energy + Delta-G solvation = -3163.424316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.51027 -39.12790 -38.08055 -35.22578 -33.70427 -32.49059 -31.45439 -30.53905 -29.18257 -27.07215 -25.27595 -24.14870 -22.73688 -21.22113 -20.71975 -19.88640 -18.26499 -17.54122 -16.42677 -16.37193 -15.95422 -15.44152 -15.08788 -14.48284 -14.21286 -13.89300 -13.50699 -13.46798 -13.10318 -13.04817 -12.91699 -12.54084 -12.24586 -12.08093 -11.92008 -11.79613 -11.37831 -11.11831 -10.86820 -10.23660 -10.08488 -9.95295 -9.52250 -9.29917 -8.82404 -8.73580 -8.39700 -8.15259 -6.23870 -4.27388 0.54979 1.20547 1.87652 2.52046 3.21325 3.33588 3.37085 3.46851 3.55665 3.65965 4.28600 4.40928 4.58423 4.67385 4.88052 5.01475 5.10342 5.13903 5.33158 5.37486 5.46373 5.48257 5.63691 5.87762 6.06495 6.18883 6.23058 6.24838 6.28075 6.30396 6.45092 6.48151 6.76345 6.92768 7.13378 7.14442 7.41745 8.02389 8.40325 8.59068 8.76508 9.35366 10.88165 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032886 B = 0.004126 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.216592 B = 6783.851897 C = 7436.207160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C -0.095 4.095 4 C -0.136 4.136 5 C -0.070 4.070 6 C -0.136 4.136 7 C -0.133 4.133 8 C -0.005 4.005 9 C 0.583 3.417 10 O -0.529 6.529 11 N -0.682 5.682 12 C 0.235 3.765 13 H 0.053 0.947 14 C -0.163 4.163 15 C -0.538 4.538 16 H 0.082 0.918 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.261 1.261 23 O -0.179 6.179 24 C 0.065 3.935 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.169 0.831 32 H 0.403 0.597 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 19.841 3.543 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.113 4.113 4 C -0.154 4.154 5 C -0.088 4.088 6 C -0.137 4.137 7 C -0.153 4.153 8 C -0.055 4.055 9 C 0.367 3.633 10 O -0.409 6.409 11 N -0.328 5.328 12 C 0.132 3.868 13 H 0.071 0.929 14 C -0.221 4.221 15 C -0.576 4.576 16 H 0.100 0.900 17 C -0.124 4.124 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.186 1.186 23 O -0.080 6.080 24 C 0.017 3.983 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.186 0.814 32 H 0.237 0.763 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.962 19.059 3.483 20.587 hybrid contribution 0.268 -0.489 0.307 0.636 sum 7.230 18.570 3.790 20.285 Atomic orbital electron populations 1.20774 0.90122 1.03337 1.02944 1.18862 0.96399 0.88314 1.03718 1.20848 0.94188 0.96350 0.99958 1.20731 0.94024 0.98024 1.02645 1.20321 0.99962 0.90032 0.98501 1.19941 0.93045 0.94018 1.06664 1.22675 0.99347 0.89864 1.03453 1.22486 0.85158 0.91547 1.06330 1.16781 0.85344 0.82652 0.78545 1.90843 1.34152 1.63684 1.52208 1.46220 1.06714 1.09878 1.70014 1.19250 0.99360 0.74864 0.93356 0.92912 1.22467 0.99958 1.00289 0.99365 1.21003 1.01259 0.93540 1.41763 0.90023 1.24819 0.95185 0.98171 0.94247 1.69864 1.22596 1.16430 1.43773 0.86879 0.82616 0.80757 0.78291 1.20194 1.22030 1.18588 1.84058 1.34101 1.14132 1.75738 1.19584 0.92818 0.83591 1.02340 0.90728 0.90969 0.91071 0.84812 0.85307 0.85356 0.81372 0.76303 0.92576 0.94360 0.93130 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.02 36.00 0.36 -0.73 16 2 C -0.07 -0.83 5.89 -104.49 -0.62 -1.45 16 3 C -0.10 -0.88 9.66 -39.53 -0.38 -1.26 16 4 C -0.14 -1.22 9.98 -39.95 -0.40 -1.62 16 5 C -0.07 -0.74 10.06 -39.62 -0.40 -1.14 16 6 C -0.14 -1.85 6.38 -105.19 -0.67 -2.53 16 7 C -0.13 -1.99 10.80 -37.23 -0.40 -2.39 16 8 C 0.00 -0.08 7.07 -36.92 -0.26 -0.34 16 9 C 0.58 11.69 7.76 -12.72 -0.10 11.59 16 10 O -0.53 -11.92 16.49 5.22 0.09 -11.83 16 11 N -0.68 -14.16 5.07 -56.15 -0.28 -14.45 16 12 C 0.23 5.62 2.15 -69.08 -0.15 5.47 16 13 H 0.05 1.37 6.63 -51.93 -0.34 1.02 16 14 C -0.16 -3.62 8.96 37.16 0.33 -3.29 16 15 C -0.54 -14.56 9.31 -34.44 -0.32 -14.88 16 16 H 0.08 2.33 7.98 -52.48 -0.42 1.92 16 17 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 18 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 19 Si 0.89 21.52 24.37 -169.99 -4.14 17.38 16 20 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 23 O -0.18 -2.89 10.28 2.78 0.03 -2.86 16 24 C 0.07 0.93 7.07 -38.35 -0.27 0.66 16 25 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 27 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.40 7.67 8.25 -40.82 -0.34 7.33 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -31.18 308.52 -6.51 -37.69 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.25 Total: 4.68 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -3.37 Total: -9.77 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.49 Total: -39.92 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.11 Total: -14.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.18 -6.51 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299647518.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.798 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds