Wall clock time and date at job start Mon Mar 30 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37833 * 120.07345 * 2 1 4 4 C 1.38786 * 120.74436 * 179.97438 * 3 2 1 5 5 C 1.36659 * 120.44648 * 359.96007 * 4 3 2 6 6 C 1.39666 * 119.71009 * 0.02562 * 5 4 3 7 7 C 1.46255 * 134.19865 * 179.97438 * 6 5 4 8 8 C 1.35803 * 106.07758 * 180.02562 * 7 6 5 9 9 C 1.46977 * 125.12497 * 179.97438 * 8 7 6 10 10 O 1.21660 * 120.00253 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00088 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99910 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47129 * 324.99754 * 12 11 9 14 14 C 1.52997 * 109.47473 * 85.00011 * 12 11 9 15 15 C 1.50699 * 109.46939 * 205.00060 * 12 11 9 16 16 H 1.08003 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00161 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00079 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 119.99984 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47308 * 89.99475 * 19 17 15 21 21 H 1.48501 * 109.47369 * 209.99550 * 19 17 15 22 22 H 1.48502 * 109.47235 * 329.99718 * 19 17 15 23 23 O 1.34943 * 109.74923 * 0.22751 * 8 7 6 24 24 C 1.34716 * 110.86237 * 359.61367 * 23 8 7 25 25 H 1.09008 * 109.47133 * 90.00033 * 1 2 3 26 26 H 1.09000 * 109.47095 * 209.99438 * 1 2 3 27 27 H 1.08994 * 109.47106 * 329.99496 * 1 2 3 28 28 H 1.08004 * 119.62633 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.78095 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.15043 * 180.02562 * 5 4 3 31 31 H 1.07991 * 126.95834 * 0.05526 * 7 6 5 32 32 H 0.96994 * 120.00115 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47153 * 59.99757 * 14 12 11 34 34 H 1.09001 * 109.46832 * 299.99948 * 14 12 11 35 35 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 36 36 H 0.96999 * 119.99874 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1928 0.0000 4 6 3.5854 1.2090 0.0005 5 6 4.2917 0.0391 0.0019 6 6 3.6109 -1.1804 0.0022 7 6 4.0294 -2.5818 0.0030 8 6 2.8867 -3.3156 0.0023 9 6 2.8247 -4.7841 0.0023 10 8 3.8517 -5.4363 0.0033 11 7 1.6301 -5.4081 0.0010 12 6 1.5683 -6.8718 0.0015 13 1 2.3948 -7.2706 -0.5868 14 6 1.6706 -7.3862 1.4388 15 6 0.2613 -7.3196 -0.6004 16 1 -0.4522 -6.5871 -0.9481 17 6 -0.0237 -8.6644 -0.7072 18 7 -1.1645 -9.0551 -1.2321 19 14 1.2099 -9.9312 -0.1052 20 1 0.9438 -10.2419 1.3223 21 1 1.0816 -11.1703 -0.9137 22 1 2.5852 -9.3887 -0.2456 23 8 1.8168 -2.4933 -0.0039 24 6 2.2035 -1.2028 0.0010 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6528 2.1253 -0.0004 29 1 4.1109 2.1526 0.0001 30 1 5.3715 0.0573 0.0027 31 1 5.0421 -2.9570 0.0044 32 1 0.8113 -4.8882 -0.0002 33 1 0.8442 -6.9875 2.0271 34 1 2.6160 -7.0623 1.8741 35 1 1.6242 -8.4752 1.4392 36 1 -1.3652 -10.0012 -1.3069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299647518.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:08 Heat of formation + Delta-G solvation = -30.485310 kcal Electronic energy + Delta-G solvation = -20127.642042 eV Core-core repulsion = 16963.324715 eV Total energy + Delta-G solvation = -3164.317327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.58769 -40.70195 -39.00640 -37.04847 -34.65775 -34.48656 -32.40058 -32.22056 -30.43153 -27.85143 -27.28818 -25.51700 -23.66222 -22.76912 -21.76039 -21.50153 -19.79490 -18.51697 -18.31017 -17.61963 -17.43808 -16.57803 -16.53972 -15.86032 -15.74831 -15.04827 -14.92523 -14.76910 -14.32384 -14.27888 -14.10874 -14.07527 -13.71223 -13.31150 -13.25118 -12.89547 -12.82168 -12.56735 -12.18156 -11.93605 -11.72814 -11.36754 -11.31115 -11.12564 -10.90669 -10.14745 -9.64694 -9.16861 -8.40669 -6.48556 -0.49840 0.33478 0.77342 1.27820 1.35659 1.38437 1.45465 2.02561 2.19577 2.24975 2.68285 2.94901 3.37470 3.53579 3.87988 3.96481 4.02682 4.31301 4.37054 4.40554 4.49451 4.50892 4.58080 4.61968 4.76529 4.86015 4.90873 5.00137 5.19297 5.25831 5.31596 5.31733 5.41089 5.44872 5.46475 5.59232 5.98900 6.10020 6.49268 6.62479 6.97724 7.20113 8.74687 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032886 B = 0.004126 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.216592 B = 6783.851897 C = 7436.207160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.078 4.078 4 C -0.128 4.128 5 C -0.072 4.072 6 C -0.159 4.159 7 C -0.111 4.111 8 C -0.042 4.042 9 C 0.589 3.411 10 O -0.560 6.560 11 N -0.686 5.686 12 C 0.240 3.760 13 H 0.034 0.966 14 C -0.157 4.157 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.031 3.969 18 N -0.932 5.932 19 Si 0.941 3.059 20 H -0.257 1.257 21 H -0.290 1.290 22 H -0.258 1.258 23 O -0.195 6.195 24 C 0.040 3.960 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.153 0.847 31 H 0.180 0.820 32 H 0.408 0.592 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 22.726 4.436 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.096 4.096 4 C -0.145 4.145 5 C -0.090 4.090 6 C -0.160 4.160 7 C -0.132 4.132 8 C -0.092 4.092 9 C 0.375 3.625 10 O -0.442 6.442 11 N -0.333 5.333 12 C 0.136 3.864 13 H 0.051 0.949 14 C -0.215 4.215 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.170 4.170 18 N -0.570 5.570 19 Si 0.768 3.232 20 H -0.182 1.182 21 H -0.217 1.217 22 H -0.183 1.183 23 O -0.098 6.098 24 C -0.008 4.008 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.189 0.811 29 H 0.186 0.814 30 H 0.171 0.829 31 H 0.198 0.802 32 H 0.244 0.756 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.442 21.975 4.385 23.946 hybrid contribution -0.197 -1.078 -0.022 1.096 sum 8.246 20.897 4.363 22.885 Atomic orbital electron populations 1.20801 0.89170 1.03811 1.03274 1.19291 0.97478 0.88083 1.04506 1.21401 0.94737 0.96734 0.96721 1.21253 0.94065 0.98966 1.00241 1.20731 1.01441 0.89291 0.97520 1.20149 0.93054 0.94289 1.08519 1.22976 0.99145 0.90816 1.00262 1.21829 0.86359 0.90213 1.10780 1.16993 0.84339 0.84008 0.77195 1.90801 1.34783 1.65044 1.53546 1.46052 1.07611 1.08756 1.70832 1.18956 0.96661 0.76756 0.94045 0.94861 1.22363 1.01054 1.00011 0.98052 1.21190 1.01927 0.93244 1.41465 0.92874 1.25582 0.96798 1.00173 0.94401 1.69977 1.24528 1.17128 1.45405 0.85968 0.80322 0.78204 0.78754 1.18214 1.21703 1.18260 1.83985 1.33952 1.15166 1.76650 1.20183 0.93906 0.83414 1.03256 0.90463 0.92827 0.88278 0.81051 0.81355 0.82909 0.80231 0.75632 0.91668 0.93090 0.93378 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.02 71.24 0.71 -1.28 16 2 C -0.09 -1.95 5.89 -19.78 -0.12 -2.07 16 3 C -0.08 -1.10 9.66 22.31 0.22 -0.89 16 4 C -0.13 -1.67 9.98 22.03 0.22 -1.45 16 5 C -0.07 -1.29 10.06 22.25 0.22 -1.06 16 6 C -0.16 -4.14 6.38 -20.23 -0.13 -4.27 16 7 C -0.11 -3.33 10.80 23.79 0.26 -3.07 16 8 C -0.04 -1.49 7.07 24.00 0.17 -1.32 16 9 C 0.59 24.39 7.76 86.53 0.67 25.06 16 10 O -0.56 -25.81 16.49 -4.22 -0.07 -25.88 16 11 N -0.69 -29.59 5.07 -449.79 -2.28 -31.87 16 12 C 0.24 11.73 2.15 44.24 0.10 11.82 16 13 H 0.03 1.77 6.63 -2.39 -0.02 1.75 16 14 C -0.16 -6.91 8.96 71.98 0.65 -6.27 16 15 C -0.54 -30.21 9.31 25.60 0.24 -29.98 16 16 H 0.05 3.20 7.98 -2.91 -0.02 3.17 16 17 C 0.03 1.74 5.45 84.65 0.46 2.20 16 18 N -0.93 -56.28 13.96 21.45 0.30 -55.98 16 19 Si 0.94 44.47 24.37 68.60 1.67 46.14 16 20 H -0.26 -11.32 6.87 99.48 0.68 -10.63 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 23 O -0.20 -6.54 10.28 -12.96 -0.13 -6.67 16 24 C 0.04 1.13 7.07 23.07 0.16 1.30 16 25 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16 27 H 0.10 1.12 8.09 -2.39 -0.02 1.10 16 28 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 29 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.18 4.73 8.06 -2.92 -0.02 4.70 16 32 H 0.41 16.46 8.25 -92.71 -0.77 15.69 16 33 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 2.13 3.27 -2.38 -0.01 2.12 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -69.73 308.52 3.58 -66.14 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.27 Total: 19.38 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 3.83 Total: -11.26 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -1.98 Total: -87.85 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.20 Total: -32.55 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.67 Total: 46.14 kcal Total: -69.73 3.58 -66.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299647518.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.657 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds