Wall clock time and date at job start Mon Mar 30 2020 01:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.52465 * 2 1 4 4 C 1.53197 * 109.49489 * 120.08234 * 2 1 3 5 5 N 1.46925 * 108.77309 * 174.58529 * 4 2 1 6 6 C 1.34785 * 120.63069 * 126.36429 * 5 4 2 7 7 O 1.21274 * 119.99583 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99805 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.46620 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99519 * 179.97438 * 9 8 6 11 11 H 1.07991 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99790 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00247 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99893 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00333 * 14 12 10 16 16 H 1.48503 * 109.47399 * 209.99822 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00429 * 14 12 10 18 18 C 1.46925 * 118.73854 * 306.64420 * 5 4 2 19 19 C 1.52764 * 109.01222 * 53.30837 * 18 5 4 20 20 C 1.53037 * 109.37780 * 305.58908 * 19 18 5 21 21 H 1.08997 * 109.45204 * 301.22206 * 20 19 18 22 22 O 1.42909 * 109.45685 * 181.25702 * 20 19 18 23 23 H 1.08997 * 109.47153 * 299.91715 * 1 2 3 24 24 H 1.08997 * 109.46768 * 59.91977 * 1 2 3 25 25 H 1.08998 * 109.47061 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46948 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46982 * 300.08138 * 3 2 1 28 28 H 1.09002 * 109.47230 * 60.08141 * 3 2 1 29 29 H 1.09002 * 109.58874 * 54.79920 * 4 2 1 30 30 H 1.08998 * 109.58804 * 294.36942 * 4 2 1 31 31 H 1.08997 * 109.47388 * 60.00287 * 8 6 5 32 32 H 1.09002 * 109.47074 * 300.00315 * 8 6 5 33 33 H 0.96995 * 120.00442 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.58884 * 173.14633 * 18 5 4 35 35 H 1.09000 * 109.58725 * 293.56469 * 18 5 4 36 36 H 1.08999 * 109.56297 * 185.55632 * 19 18 5 37 37 H 1.08998 * 109.35661 * 65.49724 * 19 18 5 38 38 H 0.96701 * 113.99558 * 59.93540 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5046 -0.8292 1.1696 6 6 4.2812 -0.3856 2.1780 7 8 3.7732 0.1057 3.1635 8 6 5.7807 -0.5002 2.0806 9 16 6.5359 0.1767 3.5798 10 6 8.2389 -0.0789 3.2066 11 1 8.5239 -0.5360 2.2706 12 6 9.2142 0.3081 4.1152 13 7 10.4864 0.1176 3.8363 14 14 8.7214 1.1006 5.7334 15 1 8.5323 0.0473 6.7630 16 1 9.7885 2.0356 6.1720 17 1 7.4516 1.8487 5.5517 18 6 4.1055 -1.4216 -0.0332 19 6 3.5709 -0.6951 -1.2660 20 6 2.0408 -0.7232 -1.2483 21 1 1.6969 -1.7574 -1.2352 22 8 1.5392 -0.0694 -2.4159 23 1 -0.3633 0.5125 0.8907 24 1 -0.3633 0.5151 -0.8893 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1313 1.4409 -0.0005 27 1 1.6773 1.9565 -0.8893 28 1 1.6797 1.9558 0.8907 29 1 1.6052 -1.7217 1.2980 30 1 1.7638 -0.1580 2.1389 31 1 6.1322 0.0576 1.2126 32 1 6.0589 -1.5489 1.9756 33 1 11.1680 0.3877 4.4714 34 1 5.1896 -1.3161 0.0100 35 1 3.8412 -2.4775 -0.0915 36 1 3.9334 -1.1898 -2.1671 37 1 3.9159 0.3388 -1.2541 38 1 1.8234 -0.4751 -3.2464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000303797059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:24 Heat of formation + Delta-G solvation = -94.511531 kcal Electronic energy + Delta-G solvation = -19644.992966 eV Core-core repulsion = 16613.343206 eV Total energy + Delta-G solvation = -3031.649761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58055 -38.40122 -35.82266 -34.29614 -32.44913 -31.35151 -29.76887 -27.39691 -26.48850 -25.62470 -24.76000 -22.63989 -19.77560 -18.68095 -17.76521 -17.51398 -16.78560 -15.77610 -15.53145 -15.19021 -14.96516 -14.54482 -13.99386 -13.85212 -13.75039 -13.39424 -13.27489 -12.80467 -12.41983 -12.25007 -12.09324 -12.05856 -11.78218 -11.67865 -11.26866 -11.15106 -11.02484 -10.99845 -10.60326 -10.42489 -10.09417 -9.86419 -9.46459 -9.01190 -8.62197 -8.49901 -6.92966 -6.29908 -4.01701 2.69059 2.91357 3.17654 3.32697 3.50207 3.57679 3.92470 4.31652 4.34307 4.42453 4.65964 4.69957 4.79632 4.98029 5.03861 5.09319 5.11276 5.20081 5.35645 5.45698 5.51128 5.56028 5.64292 5.72167 5.74334 5.78583 5.86705 5.93673 5.97130 6.03930 6.13880 6.31829 6.53837 7.37647 7.43875 7.93083 8.40151 8.42438 9.16419 10.79337 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037087 B = 0.004342 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.792189 B = 6447.781440 C = 6840.163506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.135 4.135 4 C 0.123 3.877 5 N -0.617 5.617 6 C 0.535 3.465 7 O -0.517 6.517 8 C -0.122 4.122 9 S -0.142 6.142 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.881 5.881 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.110 3.890 19 C -0.172 4.172 20 C 0.117 3.883 21 H 0.055 0.945 22 O -0.562 6.562 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 -3.506 -12.678 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.193 4.193 4 C 0.000 4.000 5 N -0.353 5.353 6 C 0.322 3.678 7 O -0.392 6.392 8 C -0.272 4.272 9 S 0.084 5.916 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.014 4.014 19 C -0.211 4.211 20 C 0.058 3.942 21 H 0.073 0.927 22 O -0.367 6.367 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.568 -2.371 -10.687 21.555 hybrid contribution 1.100 -0.758 -0.998 1.667 sum -17.468 -3.130 -11.685 21.248 Atomic orbital electron populations 1.21731 0.93343 1.01758 1.02451 1.20915 0.96348 0.96817 0.93022 1.21792 1.01374 0.94267 1.01822 1.21647 0.79713 1.00306 0.98346 1.48058 1.06220 1.62602 1.18444 1.20287 0.88752 0.76677 0.82040 1.90685 1.74997 1.43005 1.30470 1.23313 0.93333 1.05446 1.05136 1.84806 1.04796 1.80223 1.21752 1.22307 0.88434 1.47355 1.08792 0.89425 1.24703 0.94019 0.94286 0.98212 1.69932 0.99485 1.45764 1.36529 0.86742 0.80557 0.80790 0.83816 1.19192 1.19925 1.15917 1.21586 0.99422 0.96805 0.83594 1.22668 0.96814 1.03102 0.98479 1.21754 0.91825 0.94927 0.85670 0.92738 1.86525 1.75568 1.58852 1.15729 0.92419 0.91463 0.92845 0.92354 0.92015 0.92675 0.91666 0.88274 0.88572 0.88571 0.91930 0.88796 0.91288 0.90420 0.89945 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.32 37.16 0.31 -0.91 16 2 C -0.07 -0.72 0.60 -154.38 -0.09 -0.81 16 3 C -0.14 -1.61 7.85 37.16 0.29 -1.32 16 4 C 0.12 1.45 5.11 -3.71 -0.02 1.44 16 5 N -0.62 -8.30 2.42 -173.02 -0.42 -8.72 16 6 C 0.53 9.66 7.72 -10.98 -0.08 9.57 16 7 O -0.52 -11.20 15.27 5.56 0.08 -11.12 16 8 C -0.12 -2.36 4.50 36.01 0.16 -2.20 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 10 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 11 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 12 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 13 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 14 Si 0.86 21.79 27.74 -169.99 -4.71 17.08 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 18 C 0.11 1.12 6.31 -3.93 -0.02 1.09 16 19 C -0.17 -1.49 5.34 -26.83 -0.14 -1.63 16 20 C 0.12 1.02 2.56 -26.69 -0.07 0.95 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 O -0.56 -4.73 11.99 -35.23 -0.42 -5.15 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.64 7.65 -51.93 -0.40 0.24 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 27 H 0.06 0.71 7.73 -51.93 -0.40 0.31 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.37 7.00 -51.93 -0.36 1.00 16 31 H 0.10 1.74 7.68 -51.92 -0.40 1.35 16 32 H 0.10 1.73 7.95 -51.91 -0.41 1.32 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.09 0.99 5.94 -51.92 -0.31 0.68 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.85 6.33 -51.93 -0.33 0.53 16 38 H 0.37 1.66 9.08 45.56 0.41 2.08 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -33.82 313.43 -6.46 -40.28 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.04 Total: 0.01 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.54 Total: -5.77 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.36 Total: -34.45 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.34 Total: -16.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.82 -6.46 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303797059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.228 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds