Wall clock time and date at job start Mon Mar 30 2020 01:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.52465 * 2 1 4 4 C 1.53197 * 109.49489 * 120.08234 * 2 1 3 5 5 N 1.46925 * 108.77309 * 174.58529 * 4 2 1 6 6 C 1.34785 * 120.63069 * 126.36429 * 5 4 2 7 7 O 1.21274 * 119.99583 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99805 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.46620 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99519 * 179.97438 * 9 8 6 11 11 H 1.07991 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99790 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00247 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99893 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00333 * 14 12 10 16 16 H 1.48503 * 109.47399 * 209.99822 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00429 * 14 12 10 18 18 C 1.46925 * 118.73854 * 306.64420 * 5 4 2 19 19 C 1.52764 * 109.01222 * 53.30837 * 18 5 4 20 20 C 1.53037 * 109.37780 * 305.58908 * 19 18 5 21 21 H 1.08997 * 109.45204 * 301.22206 * 20 19 18 22 22 O 1.42909 * 109.45685 * 181.25702 * 20 19 18 23 23 H 1.08997 * 109.47153 * 299.91715 * 1 2 3 24 24 H 1.08997 * 109.46768 * 59.91977 * 1 2 3 25 25 H 1.08998 * 109.47061 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46948 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46982 * 300.08138 * 3 2 1 28 28 H 1.09002 * 109.47230 * 60.08141 * 3 2 1 29 29 H 1.09002 * 109.58874 * 54.79920 * 4 2 1 30 30 H 1.08998 * 109.58804 * 294.36942 * 4 2 1 31 31 H 1.08997 * 109.47388 * 60.00287 * 8 6 5 32 32 H 1.09002 * 109.47074 * 300.00315 * 8 6 5 33 33 H 0.96995 * 120.00442 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.58884 * 173.14633 * 18 5 4 35 35 H 1.09000 * 109.58725 * 293.56469 * 18 5 4 36 36 H 1.08999 * 109.56297 * 185.55632 * 19 18 5 37 37 H 1.08998 * 109.35661 * 65.49724 * 19 18 5 38 38 H 0.96701 * 113.99558 * 59.93540 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5046 -0.8292 1.1696 6 6 4.2812 -0.3856 2.1780 7 8 3.7732 0.1057 3.1635 8 6 5.7807 -0.5002 2.0806 9 16 6.5359 0.1767 3.5798 10 6 8.2389 -0.0789 3.2066 11 1 8.5239 -0.5360 2.2706 12 6 9.2142 0.3081 4.1152 13 7 10.4864 0.1176 3.8363 14 14 8.7214 1.1006 5.7334 15 1 8.5323 0.0473 6.7630 16 1 9.7885 2.0356 6.1720 17 1 7.4516 1.8487 5.5517 18 6 4.1055 -1.4216 -0.0332 19 6 3.5709 -0.6951 -1.2660 20 6 2.0408 -0.7232 -1.2483 21 1 1.6969 -1.7574 -1.2352 22 8 1.5392 -0.0694 -2.4159 23 1 -0.3633 0.5125 0.8907 24 1 -0.3633 0.5151 -0.8893 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1313 1.4409 -0.0005 27 1 1.6773 1.9565 -0.8893 28 1 1.6797 1.9558 0.8907 29 1 1.6052 -1.7217 1.2980 30 1 1.7638 -0.1580 2.1389 31 1 6.1322 0.0576 1.2126 32 1 6.0589 -1.5489 1.9756 33 1 11.1680 0.3877 4.4714 34 1 5.1896 -1.3161 0.0100 35 1 3.8412 -2.4775 -0.0915 36 1 3.9334 -1.1898 -2.1671 37 1 3.9159 0.3388 -1.2541 38 1 1.8234 -0.4751 -3.2464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000303797059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:24 Heat of formation + Delta-G solvation = -118.924086 kcal Electronic energy + Delta-G solvation = -19646.051574 eV Core-core repulsion = 16613.343206 eV Total energy + Delta-G solvation = -3032.708369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61493 -39.53642 -36.71866 -35.22090 -34.68163 -32.22929 -31.20901 -28.27387 -27.92687 -27.33961 -25.73348 -23.45166 -21.07026 -19.73467 -19.44147 -18.40383 -17.99351 -17.19520 -16.89988 -16.76457 -16.08276 -15.68569 -15.30878 -15.06773 -14.95562 -14.68696 -14.39155 -14.16487 -13.67169 -13.37579 -13.15695 -13.06139 -13.03084 -12.93469 -12.73386 -12.65191 -12.42911 -11.98774 -11.90952 -11.83959 -11.20302 -11.17986 -10.95821 -10.70261 -10.51399 -9.72874 -9.01560 -8.52553 -6.23607 0.96212 1.30317 1.44875 1.50338 1.53268 2.04433 2.24191 2.67050 2.85891 3.28175 3.44477 3.65586 3.76154 3.89573 4.05227 4.15810 4.21911 4.30440 4.35827 4.40590 4.63500 4.66087 4.73034 4.74194 4.80942 4.89802 4.93759 5.04295 5.16356 5.19895 5.35974 5.41473 5.54100 5.69877 6.10234 6.22617 6.92854 6.97684 7.06653 8.59855 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037087 B = 0.004342 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.792189 B = 6447.781440 C = 6840.163506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.131 4.131 4 C 0.121 3.879 5 N -0.604 5.604 6 C 0.534 3.466 7 O -0.562 6.562 8 C -0.106 4.106 9 S -0.178 6.178 10 C -0.528 4.528 11 H 0.063 0.937 12 C 0.048 3.952 13 N -0.916 5.916 14 Si 0.912 3.088 15 H -0.262 1.262 16 H -0.258 1.258 17 H -0.239 1.239 18 C 0.100 3.900 19 C -0.166 4.166 20 C 0.123 3.877 21 H 0.076 0.924 22 O -0.574 6.574 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.277 0.723 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.333 -4.610 -14.002 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.070 4.070 3 C -0.189 4.189 4 C -0.001 4.001 5 N -0.337 5.337 6 C 0.322 3.678 7 O -0.441 6.441 8 C -0.256 4.256 9 S 0.049 5.951 10 C -0.676 4.676 11 H 0.081 0.919 12 C -0.157 4.157 13 N -0.554 5.554 14 Si 0.734 3.266 15 H -0.186 1.186 16 H -0.183 1.183 17 H -0.163 1.163 18 C -0.022 4.022 19 C -0.204 4.204 20 C 0.064 3.936 21 H 0.094 0.906 22 O -0.382 6.382 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -20.161 -3.501 -12.078 23.762 hybrid contribution 1.516 -0.472 -0.775 1.767 sum -18.645 -3.973 -12.853 22.992 Atomic orbital electron populations 1.21686 0.92159 1.02788 1.02156 1.20894 0.97221 0.95457 0.93417 1.21740 1.00148 0.95795 1.01172 1.21795 0.78439 1.01601 0.98291 1.48064 1.06811 1.60779 1.18085 1.20005 0.88225 0.76936 0.82657 1.90669 1.75399 1.45503 1.32533 1.23275 0.94330 1.06042 1.01989 1.84747 1.03006 1.81297 1.26044 1.22439 0.90477 1.46759 1.07882 0.91870 1.25521 0.94034 0.94813 1.01357 1.70005 1.00485 1.46938 1.37984 0.85897 0.80384 0.80260 0.80023 1.18616 1.18270 1.16270 1.21922 0.99186 0.98450 0.82631 1.22636 0.96995 1.01989 0.98818 1.21663 0.91462 0.95507 0.84996 0.90569 1.86488 1.75676 1.59476 1.16587 0.92827 0.91681 0.91130 0.94094 0.91796 0.94132 0.89028 0.90714 0.87332 0.86907 0.91334 0.89279 0.88292 0.87307 0.92037 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.32 71.98 0.60 -1.46 16 2 C -0.07 -1.27 0.60 -52.10 -0.03 -1.30 16 3 C -0.13 -3.06 7.85 71.98 0.57 -2.50 16 4 C 0.12 2.65 5.11 86.36 0.44 3.09 16 5 N -0.60 -15.21 2.42 -819.71 -1.98 -17.19 16 6 C 0.53 19.04 7.72 87.66 0.68 19.71 16 7 O -0.56 -24.66 15.27 -3.01 -0.05 -24.70 16 8 C -0.11 -4.05 4.50 71.24 0.32 -3.73 16 9 S -0.18 -9.08 18.55 -56.49 -1.05 -10.12 16 10 C -0.53 -30.77 10.04 67.96 0.68 -30.08 16 11 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 12 C 0.05 2.84 5.50 84.86 0.47 3.30 16 13 N -0.92 -55.70 13.97 21.65 0.30 -55.40 16 14 Si 0.91 45.18 27.74 68.60 1.90 47.09 16 15 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 18 C 0.10 1.74 6.31 86.22 0.54 2.28 16 19 C -0.17 -2.34 5.34 30.53 0.16 -2.17 16 20 C 0.12 1.69 2.56 30.62 0.08 1.77 16 21 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 22 O -0.57 -7.73 11.99 -148.98 -1.79 -9.51 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 1.08 7.65 -2.39 -0.02 1.06 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.04 1.08 5.97 -2.39 -0.01 1.06 16 27 H 0.06 1.43 7.73 -2.39 -0.02 1.41 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.05 7.00 -2.39 -0.02 2.03 16 31 H 0.11 3.88 7.68 -2.40 -0.02 3.86 16 32 H 0.11 3.94 7.95 -2.39 -0.02 3.92 16 33 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.09 1.66 5.94 -2.38 -0.01 1.65 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.16 6.33 -2.39 -0.02 1.14 16 38 H 0.39 1.96 9.08 -74.06 -0.67 1.29 16 Total: -1.00 -74.31 313.43 2.20 -72.11 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.35 Total: 8.83 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.51 Total: -11.09 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.68 Total: -72.59 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.83 Total: -34.21 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.12 kcal Total: -74.31 2.20 -72.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303797059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.814 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds