Wall clock time and date at job start Mon Mar 30 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86801 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47262 * 275.41646 * 3 2 1 5 5 H 1.48501 * 109.47085 * 35.41488 * 3 2 1 6 6 H 1.48497 * 109.46946 * 155.41442 * 3 2 1 7 7 C 1.39933 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00227 * 341.73427 * 7 2 1 9 9 C 1.41408 * 119.99734 * 161.73089 * 7 2 1 10 10 C 1.40782 * 120.20782 * 330.19503 * 9 7 2 11 11 C 1.37652 * 119.89297 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32552 * 359.74085 * 11 10 9 13 13 C 1.39293 * 120.42190 * 0.51727 * 12 11 10 14 14 N 1.39690 * 119.94946 * 179.76603 * 13 12 11 15 15 C 1.46496 * 120.00051 * 359.72113 * 14 13 12 16 16 C 1.50699 * 109.46819 * 180.02562 * 15 14 13 17 17 C 1.34520 * 125.78997 * 90.00214 * 16 15 14 18 18 C 1.41378 * 106.83948 * 179.97438 * 17 16 15 19 19 C 1.34510 * 106.84246 * 359.97438 * 18 17 16 20 20 C 1.50704 * 125.78988 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.46792 * 89.99838 * 20 19 18 22 22 O 1.34298 * 125.79133 * 270.25940 * 16 15 14 23 23 C 1.38319 * 120.09703 * 359.48273 * 13 12 11 24 24 H 0.96995 * 120.00040 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.05667 * 359.97438 * 10 9 7 26 26 H 1.08009 * 119.83547 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.78730 * 180.27868 * 12 11 10 28 28 H 0.96997 * 119.99587 * 179.72014 * 14 13 12 29 29 H 1.08993 * 109.47364 * 60.00081 * 15 14 13 30 30 H 1.09003 * 109.46793 * 299.99724 * 15 14 13 31 31 H 1.08004 * 126.57744 * 359.93777 * 17 16 15 32 32 H 1.08001 * 126.57614 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47061 * 330.00566 * 20 19 18 34 34 H 1.08991 * 109.47193 * 209.99739 * 20 19 18 35 35 H 0.96705 * 113.99783 * 179.97438 * 21 20 19 36 36 H 1.07996 * 120.15749 * 180.23688 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1237 0.2922 9 6 3.3686 -1.2426 -0.3845 10 6 3.8629 -0.3100 -1.3161 11 6 5.1884 -0.3461 -1.6856 12 6 6.0407 -1.2926 -1.1412 13 6 5.5646 -2.2250 -0.2224 14 7 6.4318 -3.1783 0.3167 15 6 7.8393 -3.2008 -0.0889 16 6 8.5519 -4.3160 0.6319 17 6 8.6784 -5.5815 0.1937 18 6 9.4146 -6.2833 1.1756 19 6 9.6945 -5.4046 2.1549 20 6 10.4655 -5.7048 3.4145 21 8 11.8569 -5.4699 3.1886 22 8 9.1644 -4.2161 1.8229 23 6 4.2359 -2.2047 0.1613 24 1 -0.4850 0.8400 0.0004 25 1 3.2031 0.4321 -1.7408 26 1 5.5668 0.3701 -2.4001 27 1 7.0801 -1.3102 -1.4339 28 1 6.1019 -3.8254 0.9596 29 1 8.3054 -2.2484 0.1634 30 1 7.9048 -3.3637 -1.1647 31 1 8.2912 -5.9842 -0.7307 32 1 9.6979 -7.3250 1.1453 33 1 10.3138 -6.7475 3.6936 34 1 10.1138 -5.0585 4.2185 35 1 12.4151 -5.6429 3.9591 36 1 3.8666 -2.9247 0.8765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313412745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:27 Heat of formation + Delta-G solvation = -11.164738 kcal Electronic energy + Delta-G solvation = -19443.836486 eV Core-core repulsion = 16280.356962 eV Total energy + Delta-G solvation = -3163.479524 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.74661 -38.14033 -37.23662 -35.38553 -33.36197 -33.08639 -31.32764 -30.18352 -28.90761 -26.49399 -25.13094 -23.89922 -21.92527 -21.12642 -20.54576 -20.00740 -18.02977 -17.60172 -16.99011 -16.09863 -15.84846 -15.48720 -15.05834 -14.58739 -14.48268 -14.42668 -13.66026 -13.33149 -13.18810 -12.95140 -12.64392 -12.47257 -12.15647 -12.09781 -11.75102 -11.44830 -10.88256 -10.74238 -10.58743 -10.42485 -10.04913 -9.77476 -9.50002 -9.26940 -8.92703 -8.63300 -7.59273 -6.87555 -6.51026 -4.43619 1.39814 2.36348 2.65432 2.70393 2.91382 3.19365 3.29496 3.41469 4.01697 4.07392 4.18127 4.51055 4.60515 4.64433 4.81377 4.93175 4.94993 5.41132 5.53603 5.58115 5.62947 5.85601 5.91789 6.04227 6.30872 6.35123 6.57372 6.79983 6.82202 6.98424 7.03274 7.13109 7.31365 7.54767 7.68294 7.78867 8.00104 8.33186 8.39459 8.49751 8.78286 8.91911 10.15292 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035496 B = 0.003247 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.633844 B = 8620.005227 C = 8721.880986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.451 4.451 8 H 0.088 0.912 9 C 0.125 3.875 10 C -0.270 4.270 11 C -0.047 4.047 12 C -0.303 4.303 13 C 0.235 3.765 14 N -0.758 5.758 15 C 0.215 3.785 16 C -0.009 4.009 17 C -0.196 4.196 18 C -0.185 4.185 19 C -0.023 4.023 20 C 0.159 3.841 21 O -0.567 6.567 22 O -0.164 6.164 23 C -0.275 4.275 24 H 0.284 0.716 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.394 0.606 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.386 0.614 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.868 -9.332 4.810 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.133 4.133 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.479 4.479 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.290 4.290 11 C -0.066 4.066 12 C -0.325 4.325 13 C 0.136 3.864 14 N -0.392 5.392 15 C 0.090 3.910 16 C -0.060 4.060 17 C -0.216 4.216 18 C -0.204 4.204 19 C -0.074 4.074 20 C 0.082 3.918 21 O -0.374 6.374 22 O -0.060 6.060 23 C -0.299 4.299 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.227 0.773 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.557 -8.761 4.317 20.091 hybrid contribution 0.259 0.111 0.641 0.700 sum 17.816 -8.649 4.958 20.416 Atomic orbital electron populations 1.69709 1.08135 1.30123 1.35788 1.26148 0.94655 1.01784 0.90705 0.86272 0.81288 0.79595 0.78688 1.19753 1.22197 1.16712 1.19454 0.93243 0.96010 1.39230 0.89369 1.17440 0.92432 0.89658 0.88293 1.20920 0.95710 1.06116 1.06284 1.20365 0.93475 0.95967 0.96796 1.19901 0.98571 1.04252 1.09797 1.17517 0.89145 0.87839 0.91910 1.44462 1.06329 1.37347 1.51098 1.19480 0.81832 0.93394 0.96301 1.22638 1.00491 0.97497 0.85364 1.21688 1.04518 0.93081 1.02273 1.21618 1.03428 1.00987 0.94395 1.21942 1.02476 0.83675 0.99282 1.20266 0.80634 1.00254 0.90669 1.86571 1.17047 1.91909 1.41859 1.83992 1.55335 1.33497 1.33185 1.20399 0.91293 1.08349 1.09833 0.90601 0.88475 0.88910 0.88945 0.77274 0.91185 0.89605 0.82958 0.83280 0.90183 0.91619 0.76571 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.17 13.93 55.55 0.77 -21.40 16 2 C 0.09 2.30 5.40 -17.34 -0.09 2.20 16 3 Si 0.91 21.49 24.52 -169.99 -4.17 17.32 16 4 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.90 6.86 56.52 0.39 -5.51 16 7 C -0.45 -12.51 9.57 -37.74 -0.36 -12.87 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 9 C 0.13 3.27 5.10 -106.85 -0.55 2.73 16 10 C -0.27 -6.70 7.17 -38.83 -0.28 -6.98 16 11 C -0.05 -1.04 10.02 -39.69 -0.40 -1.44 16 12 C -0.30 -6.35 9.32 -39.09 -0.36 -6.72 16 13 C 0.23 4.98 6.64 -83.86 -0.56 4.42 16 14 N -0.76 -13.09 5.72 -59.86 -0.34 -13.43 16 15 C 0.21 3.11 5.43 -5.20 -0.03 3.09 16 16 C -0.01 -0.13 6.69 -35.62 -0.24 -0.36 16 17 C -0.20 -2.43 10.81 -39.70 -0.43 -2.86 16 18 C -0.18 -2.12 10.81 -39.71 -0.43 -2.55 16 19 C -0.02 -0.28 6.95 -35.62 -0.25 -0.53 16 20 C 0.16 1.30 7.58 36.01 0.27 1.57 16 21 O -0.57 -4.88 13.64 -35.23 -0.48 -5.36 16 22 O -0.16 -2.38 10.65 5.73 0.06 -2.32 16 23 C -0.27 -6.56 9.63 -38.68 -0.37 -6.93 16 24 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 25 H 0.10 2.41 4.73 -52.49 -0.25 2.16 16 26 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 27 H 0.09 1.69 6.70 -52.49 -0.35 1.34 16 28 H 0.39 6.44 8.47 -40.82 -0.35 6.10 16 29 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 30 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 31 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.39 1.14 9.12 45.56 0.42 1.55 16 36 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -31.62 310.03 -7.04 -38.66 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.49 Total: 9.09 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -4.07 Total: -27.23 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.43 Total: -34.83 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.42 Total: -7.68 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.17 Total: 17.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.62 -7.04 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313412745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.496 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds