Wall clock time and date at job start Mon Mar 30 2020 01:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86792 * 119.99883 * 2 1 4 4 H 1.48502 * 109.47630 * 270.00189 * 3 2 1 5 5 H 1.48508 * 109.47132 * 29.99800 * 3 2 1 6 6 H 1.48498 * 109.47541 * 149.99804 * 3 2 1 7 7 C 1.39935 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99994 * 196.78957 * 7 2 1 9 9 C 1.41411 * 119.99950 * 16.78419 * 7 2 1 10 10 C 1.40773 * 120.20727 * 25.19641 * 9 7 2 11 11 C 1.37641 * 119.88425 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.32346 * 359.74413 * 11 10 9 13 13 C 1.39250 * 120.42397 * 0.52036 * 12 11 10 14 14 N 1.39937 * 119.94507 * 179.76569 * 13 12 11 15 15 C 1.34772 * 120.00031 * 325.52700 * 14 13 12 16 16 O 1.21292 * 119.99768 * 354.89941 * 15 14 13 17 17 C 1.50693 * 120.00391 * 174.89816 * 15 14 13 18 18 H 1.09003 * 115.51079 * 34.62642 * 17 15 14 19 19 C 1.53004 * 117.43549 * 180.02562 * 17 15 14 20 20 H 1.08993 * 119.80610 * 354.34597 * 19 17 15 21 21 C 1.54478 * 118.06387 * 198.08358 * 19 17 15 22 22 O 1.44421 * 104.90291 * 273.11559 * 21 19 17 23 23 C 1.44688 * 105.13887 * 40.49610 * 22 21 19 24 24 C 1.53003 * 117.43500 * 249.34982 * 17 15 14 25 25 H 1.09000 * 119.80726 * 4.63501 * 24 17 15 26 26 C 1.38273 * 120.10605 * 359.47699 * 13 12 11 27 27 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.06153 * 359.95932 * 10 9 7 29 29 H 1.08009 * 119.84099 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.78798 * 180.27484 * 12 11 10 31 31 H 0.96994 * 120.00067 * 145.53497 * 14 13 12 32 32 H 1.08996 * 110.37336 * 32.00471 * 21 19 17 33 33 H 1.09001 * 110.37016 * 154.22916 * 21 19 17 34 34 H 1.08995 * 110.35616 * 200.67202 * 23 22 21 35 35 H 1.09004 * 110.35317 * 78.35858 * 23 22 21 36 36 H 1.08005 * 120.16362 * 180.23879 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3462 -2.4103 -0.3547 10 6 0.2111 -2.3733 -1.1866 11 6 -0.4276 -3.5439 -1.5276 12 6 0.0441 -4.7598 -1.0604 13 6 1.1624 -4.8112 -0.2323 14 7 1.6273 -6.0445 0.2379 15 6 0.7535 -7.0308 0.5205 16 8 -0.4394 -6.8209 0.4562 17 6 1.2583 -8.3944 0.9162 18 1 2.1767 -8.4028 1.5033 19 6 0.2150 -9.4705 1.2237 20 1 -0.8431 -9.2098 1.2417 21 6 0.6659 -10.7122 2.0245 22 8 1.1655 -11.6336 1.0309 23 6 1.9026 -10.8149 0.0930 24 6 1.0469 -9.5397 -0.0760 25 1 0.6161 -9.3349 -1.0560 26 6 1.8177 -3.6461 0.1213 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1580 -1.4282 -1.5565 29 1 -1.2986 -3.5147 -2.1656 30 1 -0.4612 -5.6734 -1.3370 31 1 2.5785 -6.1894 0.3605 32 1 1.4564 -10.4450 2.7257 33 1 -0.1798 -11.1488 2.5556 34 1 2.0066 -11.3315 -0.8611 35 1 2.8829 -10.5633 0.4980 36 1 2.6875 -3.6852 0.7604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313427421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:08 Heat of formation + Delta-G solvation = -27.275435 kcal Electronic energy + Delta-G solvation = -19842.358627 eV Core-core repulsion = 16678.180491 eV Total energy + Delta-G solvation = -3164.178136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83972 -39.23960 -37.21674 -34.78891 -34.37795 -33.08485 -29.86786 -28.97695 -28.59929 -26.09370 -25.25240 -22.84682 -21.20037 -20.87125 -20.67319 -19.64117 -17.73659 -17.48296 -16.02635 -15.94594 -15.48601 -15.37293 -14.99058 -14.85384 -14.26619 -14.09817 -13.20779 -13.10295 -12.92126 -12.78775 -12.27361 -12.01515 -11.77126 -11.68734 -11.23426 -11.20374 -10.93750 -10.59641 -10.53015 -10.45655 -10.22819 -9.92315 -9.65038 -9.46907 -9.24265 -8.97148 -7.50252 -6.97636 -6.75067 -4.39338 2.32970 2.78564 2.96345 3.06257 3.09377 3.20286 3.37363 3.56836 3.75552 3.91972 4.37136 4.39228 4.61640 4.63889 4.67063 4.89105 5.04893 5.09660 5.39689 5.42752 5.46726 5.65550 5.78264 5.92949 6.25894 6.39862 6.49649 6.70093 6.89039 6.97614 7.01598 7.22423 7.55567 7.62848 7.93494 8.00235 8.09943 8.27278 8.53089 8.65394 8.86455 8.93701 10.18501 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.047998 B = 0.003319 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.216046 B = 8434.964084 C = 8662.552895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.122 3.878 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.227 4.227 13 C 0.151 3.849 14 N -0.660 5.660 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.146 4.146 18 H 0.122 0.878 19 C -0.161 4.161 20 H 0.136 0.864 21 C 0.073 3.927 22 O -0.373 6.373 23 C 0.074 3.926 24 C -0.168 4.168 25 H 0.128 0.872 26 C -0.243 4.243 27 H 0.281 0.719 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -14.164 1.238 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.119 3.881 10 C -0.186 4.186 11 C -0.114 4.114 12 C -0.248 4.248 13 C 0.060 3.940 14 N -0.303 5.303 15 C 0.320 3.680 16 O -0.394 6.394 17 C -0.167 4.167 18 H 0.140 0.860 19 C -0.179 4.179 20 H 0.154 0.846 21 C -0.004 4.004 22 O -0.292 6.292 23 C -0.002 4.002 24 C -0.187 4.187 25 H 0.146 0.854 26 C -0.265 4.265 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.235 0.765 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.444 -14.134 1.204 14.597 hybrid contribution 0.814 1.093 0.175 1.374 sum 4.258 -13.041 1.379 13.788 Atomic orbital electron populations 1.69830 1.07558 1.29220 1.35281 1.25898 0.94730 1.01290 0.92264 0.86296 0.80412 0.80596 0.79290 1.19276 1.20341 1.18668 1.19527 0.97711 0.90999 1.41247 0.90431 1.17375 0.91026 0.91332 0.88330 1.21384 0.99161 0.96885 1.01160 1.20588 0.98428 0.92793 0.99626 1.20278 1.01022 0.97268 1.06212 1.17427 0.97149 0.82816 0.96615 1.43375 1.09704 1.12523 1.64716 1.19428 0.86468 0.84628 0.77434 1.90735 1.15684 1.82083 1.50855 1.22407 1.01505 0.89356 1.03456 0.85973 1.24172 0.99248 0.96675 0.97844 0.84626 1.22953 0.99121 0.87615 0.90675 1.89240 1.70802 1.30924 1.38212 1.22987 0.93890 0.89016 0.94312 1.24173 1.02633 0.95778 0.96121 0.85382 1.20703 1.05608 0.91414 1.08787 0.90841 0.86258 0.89004 0.88303 0.76484 0.91727 0.88076 0.88092 0.91584 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.59 10.94 55.55 0.61 -19.98 16 2 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 3 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.47 -12.19 9.05 -37.74 -0.34 -12.53 16 8 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 9 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 10 C -0.17 -4.37 8.69 -38.84 -0.34 -4.70 16 11 C -0.10 -2.33 10.02 -39.69 -0.40 -2.73 16 12 C -0.23 -5.41 8.66 -39.10 -0.34 -5.75 16 13 C 0.15 3.41 6.25 -83.77 -0.52 2.89 16 14 N -0.66 -11.60 5.33 -9.91 -0.05 -11.66 16 15 C 0.53 9.16 7.34 -10.99 -0.08 9.08 16 16 O -0.52 -11.09 14.09 5.55 0.08 -11.01 16 17 C -0.15 -1.75 5.74 -91.77 -0.53 -2.28 16 18 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.16 -1.84 6.65 -89.07 -0.59 -2.43 16 20 H 0.14 1.75 7.82 -51.93 -0.41 1.34 16 21 C 0.07 0.69 7.43 37.93 0.28 0.97 16 22 O -0.37 -4.07 11.67 -35.23 -0.41 -4.48 16 23 C 0.07 0.67 7.44 37.94 0.28 0.95 16 24 C -0.17 -1.82 6.91 -89.07 -0.62 -2.43 16 25 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 26 C -0.24 -5.86 9.70 -38.69 -0.38 -6.23 16 27 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 29 H 0.09 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.10 2.33 6.48 -52.49 -0.34 1.99 16 31 H 0.40 5.50 8.82 -40.82 -0.36 5.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 307.98 15.07 4.64 4.64 Total: -1.00 -30.89 307.98 -8.78 -39.67 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.36 Total: 10.10 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -4.25 Total: -20.75 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.55 Total: -31.64 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.33 Total: -15.49 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.89 -8.78 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.394 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds