Wall clock time and date at job start Mon Mar 30 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86792 * 119.99883 * 2 1 4 4 H 1.48502 * 109.47630 * 270.00189 * 3 2 1 5 5 H 1.48508 * 109.47132 * 29.99800 * 3 2 1 6 6 H 1.48498 * 109.47541 * 149.99804 * 3 2 1 7 7 C 1.39935 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99994 * 196.78957 * 7 2 1 9 9 C 1.41411 * 119.99950 * 16.78419 * 7 2 1 10 10 C 1.40773 * 120.20727 * 25.19641 * 9 7 2 11 11 C 1.37641 * 119.88425 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.32346 * 359.74413 * 11 10 9 13 13 C 1.39250 * 120.42397 * 0.52036 * 12 11 10 14 14 N 1.39937 * 119.94507 * 179.76569 * 13 12 11 15 15 C 1.34772 * 120.00031 * 325.52700 * 14 13 12 16 16 O 1.21292 * 119.99768 * 354.89941 * 15 14 13 17 17 C 1.50693 * 120.00391 * 174.89816 * 15 14 13 18 18 H 1.09003 * 115.51079 * 34.62642 * 17 15 14 19 19 C 1.53004 * 117.43549 * 180.02562 * 17 15 14 20 20 H 1.08993 * 119.80610 * 354.34597 * 19 17 15 21 21 C 1.54478 * 118.06387 * 198.08358 * 19 17 15 22 22 O 1.44421 * 104.90291 * 273.11559 * 21 19 17 23 23 C 1.44688 * 105.13887 * 40.49610 * 22 21 19 24 24 C 1.53003 * 117.43500 * 249.34982 * 17 15 14 25 25 H 1.09000 * 119.80726 * 4.63501 * 24 17 15 26 26 C 1.38273 * 120.10605 * 359.47699 * 13 12 11 27 27 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.06153 * 359.95932 * 10 9 7 29 29 H 1.08009 * 119.84099 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.78798 * 180.27484 * 12 11 10 31 31 H 0.96994 * 120.00067 * 145.53497 * 14 13 12 32 32 H 1.08996 * 110.37336 * 32.00471 * 21 19 17 33 33 H 1.09001 * 110.37016 * 154.22916 * 21 19 17 34 34 H 1.08995 * 110.35616 * 200.67202 * 23 22 21 35 35 H 1.09004 * 110.35317 * 78.35858 * 23 22 21 36 36 H 1.08005 * 120.16362 * 180.23879 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3462 -2.4103 -0.3547 10 6 0.2111 -2.3733 -1.1866 11 6 -0.4276 -3.5439 -1.5276 12 6 0.0441 -4.7598 -1.0604 13 6 1.1624 -4.8112 -0.2323 14 7 1.6273 -6.0445 0.2379 15 6 0.7535 -7.0308 0.5205 16 8 -0.4394 -6.8209 0.4562 17 6 1.2583 -8.3944 0.9162 18 1 2.1767 -8.4028 1.5033 19 6 0.2150 -9.4705 1.2237 20 1 -0.8431 -9.2098 1.2417 21 6 0.6659 -10.7122 2.0245 22 8 1.1655 -11.6336 1.0309 23 6 1.9026 -10.8149 0.0930 24 6 1.0469 -9.5397 -0.0760 25 1 0.6161 -9.3349 -1.0560 26 6 1.8177 -3.6461 0.1213 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1580 -1.4282 -1.5565 29 1 -1.2986 -3.5147 -2.1656 30 1 -0.4612 -5.6734 -1.3370 31 1 2.5785 -6.1894 0.3605 32 1 1.4564 -10.4450 2.7257 33 1 -0.1798 -11.1488 2.5556 34 1 2.0066 -11.3315 -0.8611 35 1 2.8829 -10.5633 0.4980 36 1 2.6875 -3.6852 0.7604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313427421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:07 Heat of formation + Delta-G solvation = -46.580365 kcal Electronic energy + Delta-G solvation = -19843.195751 eV Core-core repulsion = 16678.180491 eV Total energy + Delta-G solvation = -3165.015261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90665 -40.55931 -38.94879 -36.24691 -35.57425 -34.87967 -31.80427 -30.32987 -29.68215 -27.33327 -27.01802 -24.03596 -22.94089 -22.29144 -21.68646 -21.06210 -19.44437 -18.75840 -17.49715 -17.07400 -16.93673 -16.62553 -16.34358 -16.08483 -15.84545 -15.37382 -14.93417 -14.65194 -14.14113 -14.04522 -13.58202 -13.56791 -13.00520 -12.97445 -12.87168 -12.71959 -12.56356 -12.27353 -11.95515 -11.48780 -11.46862 -11.35926 -11.16335 -11.01679 -10.68602 -10.65346 -9.45341 -8.81511 -8.62216 -6.38138 0.75964 0.94393 1.39788 1.43119 1.53760 1.58858 2.02493 2.21970 2.48184 2.74153 3.03555 3.39227 3.49152 3.66938 3.73064 3.85342 4.05908 4.10070 4.39005 4.40899 4.61452 4.66680 4.76679 4.81326 4.96174 4.97869 5.00015 5.03897 5.09771 5.19097 5.31583 5.70201 5.70693 5.80186 6.05526 6.07757 6.25501 6.57209 6.67569 6.90647 6.95536 7.22001 8.33277 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.047998 B = 0.003319 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.216046 B = 8434.964084 C = 8662.552895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.194 4.194 11 C -0.099 4.099 12 C -0.240 4.240 13 C 0.161 3.839 14 N -0.652 5.652 15 C 0.532 3.468 16 O -0.566 6.566 17 C -0.140 4.140 18 H 0.159 0.841 19 C -0.170 4.170 20 H 0.114 0.886 21 C 0.078 3.922 22 O -0.390 6.390 23 C 0.078 3.922 24 C -0.161 4.161 25 H 0.117 0.883 26 C -0.253 4.253 27 H 0.288 0.712 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.422 0.578 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 -15.239 1.995 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.525 4.525 8 H 0.101 0.899 9 C 0.092 3.908 10 C -0.214 4.214 11 C -0.118 4.118 12 C -0.261 4.261 13 C 0.068 3.932 14 N -0.297 5.297 15 C 0.321 3.679 16 O -0.444 6.444 17 C -0.161 4.161 18 H 0.177 0.823 19 C -0.189 4.189 20 H 0.132 0.868 21 C 0.002 3.998 22 O -0.309 6.309 23 C 0.002 3.998 24 C -0.180 4.180 25 H 0.135 0.865 26 C -0.275 4.275 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.260 0.740 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.436 -15.252 1.967 16.311 hybrid contribution 0.133 1.330 -0.066 1.338 sum 5.569 -13.922 1.901 15.115 Atomic orbital electron populations 1.69897 1.09206 1.30644 1.35554 1.26827 0.95468 1.04761 0.91105 0.85135 0.79049 0.75581 0.79520 1.18660 1.19552 1.17833 1.19842 0.98170 0.91959 1.42536 0.89916 1.17764 0.91511 0.92712 0.88777 1.21323 1.00407 0.96812 1.02851 1.20807 0.98747 0.92645 0.99555 1.20417 1.01822 0.96972 1.06926 1.17455 0.96048 0.84517 0.95156 1.43311 1.11109 1.10988 1.64249 1.20319 0.85708 0.86045 0.75842 1.90716 1.17892 1.83102 1.52691 1.22321 1.02867 0.86166 1.04772 0.82328 1.24214 0.98174 0.97233 0.99235 0.86823 1.23038 1.00229 0.86190 0.90348 1.89232 1.71213 1.31645 1.38831 1.23146 0.94051 0.87590 0.95030 1.24259 1.02597 0.95778 0.95323 0.86461 1.20888 1.06341 0.91194 1.09078 0.90114 0.87759 0.87394 0.88214 0.74006 0.89662 0.87051 0.86602 0.89267 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.81 10.94 21.82 0.24 -43.57 16 2 C 0.03 1.67 5.16 85.25 0.44 2.11 16 3 Si 0.99 37.69 29.59 68.60 2.03 39.72 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.50 -26.37 9.05 23.46 0.21 -26.16 16 8 H 0.08 4.15 7.90 -2.91 -0.02 4.13 16 9 C 0.10 5.17 5.57 -21.31 -0.12 5.05 16 10 C -0.19 -10.56 8.69 22.75 0.20 -10.37 16 11 C -0.10 -4.95 10.02 22.20 0.22 -4.73 16 12 C -0.24 -11.65 8.66 22.58 0.20 -11.45 16 13 C 0.16 7.26 6.25 38.10 0.24 7.50 16 14 N -0.65 -22.06 5.33 -303.67 -1.62 -23.67 16 15 C 0.53 17.72 7.34 87.66 0.64 18.36 16 16 O -0.57 -24.43 14.09 -3.07 -0.04 -24.47 16 17 C -0.14 -3.03 5.74 -11.54 -0.07 -3.10 16 18 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 19 C -0.17 -3.61 6.65 -9.79 -0.07 -3.68 16 20 H 0.11 2.94 7.82 -2.39 -0.02 2.92 16 21 C 0.08 1.25 7.43 72.48 0.54 1.79 16 22 O -0.39 -7.32 11.67 -148.98 -1.74 -9.06 16 23 C 0.08 1.12 7.44 72.49 0.54 1.66 16 24 C -0.16 -3.12 6.91 -9.79 -0.07 -3.19 16 25 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 26 C -0.25 -12.24 9.70 22.85 0.22 -12.02 16 27 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 28 H 0.10 5.88 6.17 -2.91 -0.02 5.86 16 29 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 30 H 0.10 4.78 6.48 -2.91 -0.02 4.76 16 31 H 0.42 10.57 8.82 -92.71 -0.82 9.75 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -68.70 307.98 2.29 -66.41 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.29 Total: 32.86 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 3.13 Total: -38.22 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -1.38 Total: -67.25 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.78 Total: -33.53 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -68.70 2.29 -66.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.829 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds