Wall clock time and date at job start Mon Mar 30 2020 01:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48496 * 109.47371 * 269.99879 * 3 2 1 5 5 H 1.48499 * 109.47144 * 29.99842 * 3 2 1 6 6 H 1.48500 * 109.46999 * 149.99743 * 3 2 1 7 7 C 1.38814 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00141 * 200.39275 * 7 2 1 9 9 N 1.36937 * 120.00138 * 20.38959 * 7 2 1 10 10 C 1.46503 * 119.99599 * 37.95453 * 9 7 2 11 11 C 1.53006 * 109.47113 * 90.00087 * 10 9 7 12 12 H 1.09003 * 109.38364 * 55.20592 * 11 10 9 13 13 C 1.52583 * 109.38165 * 295.52518 * 11 10 9 14 14 C 1.52593 * 110.64157 * 169.85691 * 13 11 10 15 15 C 1.53041 * 109.98677 * 69.98250 * 14 13 11 16 16 S 1.81668 * 108.99797 * 296.35292 * 15 14 13 17 17 O 1.42092 * 108.66571 * 299.96781 * 16 15 14 18 18 O 1.42103 * 108.66121 * 168.62748 * 16 15 14 19 19 C 1.53038 * 109.38576 * 174.99928 * 11 10 9 20 20 C 1.46496 * 120.00260 * 217.95505 * 9 7 2 21 21 C 1.53000 * 117.49830 * 14.26417 * 20 9 7 22 22 C 1.53001 * 117.49752 * 305.64237 * 20 9 7 23 23 H 0.97006 * 120.00177 * 354.93025 * 1 2 3 24 24 H 1.08999 * 109.47382 * 329.99868 * 10 9 7 25 25 H 1.09000 * 109.46885 * 209.99855 * 10 9 7 26 26 H 1.09001 * 109.24215 * 290.15306 * 13 11 10 27 27 H 1.08999 * 109.25065 * 49.55650 * 13 11 10 28 28 H 1.09002 * 109.38360 * 309.82572 * 14 13 11 29 29 H 1.08994 * 109.38486 * 190.14121 * 14 13 11 30 30 H 1.09000 * 109.54712 * 176.49612 * 15 14 13 31 31 H 1.09007 * 109.54838 * 56.20759 * 15 14 13 32 32 H 1.09005 * 109.54374 * 303.66033 * 19 11 10 33 33 H 1.08999 * 109.54596 * 63.84928 * 19 11 10 34 34 H 1.09003 * 115.54825 * 159.97666 * 20 9 7 35 35 H 1.08992 * 117.49899 * 0.02562 * 21 20 9 36 36 H 1.09007 * 117.49430 * 145.02398 * 21 20 9 37 37 H 1.08999 * 117.50247 * 214.97685 * 22 20 9 38 38 H 1.09004 * 117.50006 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0394 -1.2317 0.3254 9 7 1.3898 -2.3508 -0.4142 10 6 0.4542 -2.3129 -1.5409 11 6 1.2160 -2.5586 -2.8449 12 1 1.7664 -3.4966 -2.7711 13 6 2.1980 -1.4149 -3.0810 14 6 3.1447 -1.7474 -4.2306 15 6 2.3816 -1.7346 -5.5571 16 16 1.1254 -3.0467 -5.5293 17 8 1.7774 -4.2969 -5.3537 18 8 0.2534 -2.8648 -6.6366 19 6 0.2222 -2.6429 -4.0057 20 6 1.6617 -3.6173 0.2699 21 6 2.3698 -3.5508 1.6245 22 6 3.1228 -4.0549 0.3918 23 1 -0.4851 0.8368 0.0742 24 1 -0.0278 -1.3360 -1.5803 25 1 -0.3026 -3.0865 -1.4109 26 1 1.6426 -0.5089 -3.3236 27 1 2.7790 -1.2472 -2.1742 28 1 3.5752 -2.7359 -4.0704 29 1 3.9444 -1.0077 -4.2661 30 1 3.0756 -1.9114 -6.3788 31 1 1.8962 -0.7676 -5.6893 32 1 -0.5131 -3.4209 -3.8004 33 1 -0.2838 -1.6845 -4.1228 34 1 0.9128 -4.3970 0.1307 35 1 2.6328 -2.5646 2.0070 36 1 2.0865 -4.2867 2.3771 37 1 3.3350 -5.1224 0.3334 38 1 3.8817 -3.4002 -0.0367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328924596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:41 Heat of formation + Delta-G solvation = -33.602724 kcal Electronic energy + Delta-G solvation = -20468.282891 eV Core-core repulsion = 17439.274334 eV Total energy + Delta-G solvation = -3029.008557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -37.97097 -36.83333 -36.14918 -35.81143 -33.52366 -32.06288 -30.09234 -27.17530 -25.96816 -23.83893 -21.84821 -21.37831 -20.21279 -19.58215 -18.60754 -16.81182 -16.27089 -15.82852 -15.50359 -15.36788 -14.83275 -14.31377 -14.26585 -13.75872 -13.28111 -13.05921 -12.67018 -12.41634 -11.99231 -11.93886 -11.81516 -11.55912 -11.22434 -11.01740 -10.94715 -10.88489 -10.72660 -10.61372 -10.58331 -10.18973 -10.15420 -9.89939 -9.70146 -9.49019 -9.26733 -8.53249 -6.56794 -5.95122 -3.51052 0.27000 2.87798 3.22240 3.32250 3.32809 3.83805 4.16778 4.30488 4.79348 4.82040 4.91978 4.98328 5.08636 5.22453 5.34567 5.40140 5.56345 5.69805 5.88277 5.90749 5.95487 6.06521 6.16872 6.19094 6.30432 6.47252 6.58583 6.61829 6.74718 6.81345 6.95304 7.14055 7.15463 7.53444 7.70449 8.38580 9.03762 9.65671 10.23814 11.05021 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.007308 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.299077 B = 3830.538135 C = 4550.267926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.020 3.980 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.548 5.548 10 C 0.158 3.842 11 C -0.093 4.093 12 H 0.077 0.923 13 C -0.134 4.134 14 C -0.109 4.109 15 C -0.600 4.600 16 S 2.406 3.594 17 O -0.945 6.945 18 O -0.960 6.960 19 C -0.584 4.584 20 C 0.126 3.874 21 C -0.197 4.197 22 C -0.226 4.226 23 H 0.258 0.742 24 H 0.102 0.898 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 -2.858 -6.737 7.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.181 4.181 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.264 5.264 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.096 0.904 13 C -0.171 4.171 14 C -0.147 4.147 15 C -0.730 4.730 16 S 2.591 3.409 17 O -0.942 6.942 18 O -0.957 6.957 19 C -0.716 4.716 20 C 0.016 3.984 21 C -0.236 4.236 22 C -0.267 4.267 23 H 0.068 0.932 24 H 0.120 0.880 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.518 -3.376 -7.449 8.557 hybrid contribution 0.553 1.589 0.509 1.758 sum 3.071 -1.787 -6.940 7.797 Atomic orbital electron populations 1.69878 1.05576 1.26229 1.50927 1.25210 0.95026 0.98555 0.99299 0.86467 0.79641 0.83726 0.78091 1.20908 1.21631 1.20117 1.18890 0.94136 0.84614 1.41335 0.91818 1.43390 1.50121 1.02376 1.30486 1.20988 0.90164 1.03105 0.82671 1.21620 0.94996 0.99528 0.95360 0.90449 1.21827 0.97732 0.97834 0.99731 1.21371 0.99056 1.03807 0.90502 1.30201 1.16943 1.19028 1.06811 1.08282 0.77747 0.77325 0.77589 1.93552 1.75303 1.38699 1.86654 1.93547 1.64897 1.87114 1.50184 1.30228 1.12158 1.11956 1.17226 1.21154 0.91476 0.90785 0.94978 1.23063 1.06965 1.02013 0.91577 1.23360 0.99811 0.99082 1.04473 0.93165 0.88008 0.95169 0.91908 0.86610 0.90327 0.90402 0.85837 0.85325 0.85348 0.85151 0.89471 0.88365 0.90939 0.90926 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.05 11.43 55.49 0.63 -22.41 16 2 C 0.02 0.50 4.98 -17.43 -0.09 0.42 16 3 Si 0.89 19.64 29.60 -169.99 -5.03 14.60 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.26 -6.23 5.72 -15.06 -0.09 -6.31 16 8 H 0.06 1.56 7.21 -52.48 -0.38 1.18 16 9 N -0.55 -12.11 2.65 -165.66 -0.44 -12.55 16 10 C 0.16 3.23 4.83 -4.04 -0.02 3.21 16 11 C -0.09 -1.57 2.22 -90.81 -0.20 -1.77 16 12 H 0.08 1.32 8.01 -51.93 -0.42 0.91 16 13 C -0.13 -2.21 4.76 -27.15 -0.13 -2.34 16 14 C -0.11 -1.46 5.73 -26.92 -0.15 -1.62 16 15 C -0.60 -7.01 6.35 37.18 0.24 -6.78 16 16 S 2.41 33.26 5.31 -107.50 -0.57 32.69 16 17 O -0.94 -15.96 17.94 -57.81 -1.04 -16.99 16 18 O -0.96 -15.80 18.10 -57.81 -1.05 -16.85 16 19 C -0.58 -8.11 5.62 37.18 0.21 -7.90 16 20 C 0.13 2.52 6.62 -67.93 -0.45 2.07 16 21 C -0.20 -3.77 9.81 -26.73 -0.26 -4.03 16 22 C -0.23 -4.12 10.08 -26.73 -0.27 -4.39 16 23 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 24 H 0.10 2.34 5.50 -51.93 -0.29 2.05 16 25 H 0.03 0.59 8.04 -51.93 -0.42 0.18 16 26 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 27 H 0.12 2.22 5.65 -51.93 -0.29 1.92 16 28 H 0.08 1.05 8.01 -51.93 -0.42 0.64 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.13 1.62 8.14 -51.92 -0.42 1.19 16 33 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 35 H 0.10 2.08 6.96 -51.93 -0.36 1.71 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.62 7.98 -51.93 -0.41 1.21 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -29.84 311.95 -9.92 -39.77 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.92 Total: 6.47 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: -1.21 Total: -29.44 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.20 Total: -34.96 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -2.08 Total: -33.84 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.60 kcal Atomic # 16 Polarization: 33.26 SS G_CDS: -0.57 Total: 32.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.84 -9.92 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328924596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.164 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds