Wall clock time and date at job start Mon Mar 30 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48497 * 109.47588 * 239.72820 * 3 2 1 5 5 H 1.48505 * 109.47207 * 359.72881 * 3 2 1 6 6 H 1.48502 * 109.47180 * 119.72728 * 3 2 1 7 7 C 1.38817 * 119.99744 * 179.72879 * 2 1 3 8 8 H 1.08002 * 119.99881 * 201.25364 * 7 2 1 9 9 N 1.36929 * 120.00092 * 21.25641 * 7 2 1 10 10 C 1.46505 * 120.00357 * 35.05818 * 9 7 2 11 11 C 1.52997 * 109.47392 * 89.99517 * 10 9 7 12 12 H 1.09003 * 109.38591 * 304.79224 * 11 10 9 13 13 C 1.52594 * 109.38416 * 64.47559 * 11 10 9 14 14 C 1.52591 * 110.64412 * 190.14123 * 13 11 10 15 15 C 1.53030 * 109.98667 * 290.01949 * 14 13 11 16 16 S 1.81669 * 109.00278 * 63.64905 * 15 14 13 17 17 O 1.42100 * 108.66220 * 191.37249 * 16 15 14 18 18 O 1.42098 * 108.66520 * 60.02731 * 16 15 14 19 19 C 1.53035 * 109.38774 * 185.00432 * 11 10 9 20 20 C 1.46501 * 119.99911 * 215.05349 * 9 7 2 21 21 C 1.52995 * 117.49898 * 14.18193 * 20 9 7 22 22 C 1.52997 * 117.50010 * 305.55808 * 20 9 7 23 23 H 0.97002 * 120.00137 * 4.81568 * 1 2 3 24 24 H 1.09001 * 109.47442 * 209.99901 * 10 9 7 25 25 H 1.08999 * 109.46858 * 329.99999 * 10 9 7 26 26 H 1.08997 * 109.24304 * 310.44532 * 13 11 10 27 27 H 1.09004 * 109.23430 * 69.84606 * 13 11 10 28 28 H 1.08997 * 109.38223 * 169.85265 * 14 13 11 29 29 H 1.08997 * 109.29436 * 50.12345 * 14 13 11 30 30 H 1.09000 * 109.54886 * 303.78855 * 15 14 13 31 31 H 1.09007 * 109.62720 * 183.55243 * 15 14 13 32 32 H 1.09001 * 109.54699 * 296.04931 * 19 11 10 33 33 H 1.08991 * 109.54949 * 56.33861 * 19 11 10 34 34 H 1.09006 * 115.54772 * 159.89247 * 20 9 7 35 35 H 1.08994 * 117.49716 * 359.97438 * 21 20 9 36 36 H 1.08999 * 117.49992 * 145.02114 * 21 20 9 37 37 H 1.08998 * 117.49914 * 214.97774 * 22 20 9 38 38 H 1.09003 * 117.49931 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1090 1.6936 -1.2091 5 1 1.2852 2.7464 -0.0066 6 1 3.0990 1.6992 1.2158 7 6 2.0102 -1.2022 0.0057 8 1 3.0352 -1.2324 0.3449 9 7 1.3954 -2.3497 -0.4188 10 6 0.4265 -2.2987 -1.5165 11 6 1.1531 -2.4997 -2.8479 12 1 1.9502 -1.7620 -2.9400 13 6 1.7555 -3.9011 -2.8896 14 6 2.6923 -4.0486 -4.0850 15 6 1.8845 -4.0563 -5.3847 16 16 1.0558 -2.4509 -5.5757 17 8 0.1080 -2.5510 -6.6297 18 8 2.0446 -1.4314 -5.6219 19 6 0.1612 -2.3222 -3.9997 20 6 1.7066 -3.6285 0.2247 21 6 2.4549 -3.5846 1.5584 22 6 3.1768 -4.0467 0.2910 23 1 -0.4850 0.8371 -0.0705 24 1 -0.3143 -3.0872 -1.3842 25 1 -0.0711 -1.3290 -1.5170 26 1 2.3144 -4.0793 -1.9710 27 1 0.9531 -4.6346 -2.9693 28 1 3.2460 -4.9834 -3.9975 29 1 3.3924 -3.2134 -4.0991 30 1 1.1381 -4.8497 -5.3456 31 1 2.5521 -4.2250 -6.2298 32 1 -0.6006 -3.1000 -3.9482 33 1 -0.3105 -1.3423 -3.9271 34 1 0.9650 -4.4159 0.0889 35 1 2.7161 -2.6043 1.9569 36 1 2.2058 -4.3430 2.3005 37 1 3.4025 -5.1091 0.1994 38 1 3.9126 -3.3706 -0.1445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328924597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:42 Heat of formation + Delta-G solvation = -53.758574 kcal Electronic energy + Delta-G solvation = -20429.473814 eV Core-core repulsion = 17399.591234 eV Total energy + Delta-G solvation = -3029.882580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.52101 -38.11712 -37.41351 -37.02590 -35.26324 -33.42706 -31.70169 -28.50297 -27.42172 -25.47930 -23.25566 -22.90330 -21.59758 -21.13785 -19.73497 -18.37728 -17.47914 -17.34462 -17.02543 -16.62680 -16.23979 -15.80460 -15.73372 -15.11740 -14.58058 -14.49961 -13.86346 -13.73751 -13.55338 -13.21752 -13.13227 -13.04723 -12.70582 -12.59584 -12.55090 -12.41302 -12.15752 -12.11694 -11.99987 -11.75736 -11.61393 -11.31274 -11.11604 -10.88418 -10.76666 -10.34362 -8.50525 -7.75720 -5.43426 -0.83677 1.41911 1.46759 1.51270 1.81911 2.48286 2.76505 3.04784 3.16689 3.48508 3.51990 3.78924 3.86544 3.95431 4.02189 4.26985 4.36735 4.39655 4.52259 4.60282 4.63105 4.75314 4.80799 4.90606 5.01615 5.08793 5.11319 5.17974 5.33561 5.41968 5.57858 5.59797 5.61487 5.68945 5.88263 6.46004 7.17553 7.90083 8.35247 9.10092 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.007523 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.936117 B = 3721.014804 C = 4660.402016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.034 4.034 3 Si 0.938 3.062 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.055 0.945 9 N -0.562 5.562 10 C 0.152 3.848 11 C -0.091 4.091 12 H 0.053 0.947 13 C -0.138 4.138 14 C -0.108 4.108 15 C -0.572 4.572 16 S 2.409 3.591 17 O -0.986 6.986 18 O -0.990 6.990 19 C -0.585 4.585 20 C 0.111 3.889 21 C -0.208 4.208 22 C -0.201 4.201 23 H 0.250 0.750 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -12.865 -7.307 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.231 4.231 3 Si 0.767 3.233 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.073 0.927 9 N -0.279 5.279 10 C 0.025 3.975 11 C -0.113 4.113 12 H 0.072 0.928 13 C -0.175 4.175 14 C -0.147 4.147 15 C -0.705 4.705 16 S 2.597 3.403 17 O -0.983 6.983 18 O -0.987 6.987 19 C -0.716 4.716 20 C 0.002 3.998 21 C -0.247 4.247 22 C -0.241 4.241 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.185 0.815 31 H 0.170 0.830 32 H 0.179 0.821 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.137 -12.061 -7.999 14.629 hybrid contribution 0.285 1.181 0.796 1.453 sum 2.422 -10.880 -7.202 13.271 Atomic orbital electron populations 1.70111 1.06276 1.26210 1.52916 1.25587 0.95560 1.00788 1.01202 0.85798 0.78306 0.81014 0.78201 1.21053 1.21905 1.20203 1.19060 0.93838 0.86670 1.38572 0.92720 1.43553 1.48094 1.01868 1.34370 1.20976 0.90411 1.01938 0.84159 1.21366 0.96336 0.98709 0.94848 0.92829 1.21881 1.00267 0.95239 1.00087 1.21312 0.97927 1.05232 0.90209 1.29982 1.13432 1.19648 1.07457 1.07963 0.76096 0.79220 0.76971 1.93510 1.63233 1.87896 1.53672 1.93517 1.60614 1.57455 1.87149 1.30169 1.12332 1.12102 1.16975 1.21387 0.92699 0.89786 0.95883 1.23116 1.07774 1.01511 0.92290 1.23345 0.98084 1.00838 1.01839 0.94063 0.93778 0.91409 0.89086 0.88901 0.87040 0.91850 0.81508 0.82999 0.82132 0.86317 0.87020 0.91603 0.88216 0.87175 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.32 11.27 21.65 0.24 -51.07 16 2 C -0.03 -1.84 4.99 84.86 0.42 -1.42 16 3 Si 0.94 44.69 29.61 68.60 2.03 46.72 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.25 -13.01 8.15 84.04 0.69 -12.32 16 8 H 0.06 2.89 7.08 -2.91 -0.02 2.87 16 9 N -0.56 -25.17 2.62 -678.03 -1.77 -26.94 16 10 C 0.15 6.28 4.80 86.38 0.41 6.70 16 11 C -0.09 -3.02 2.22 -10.92 -0.02 -3.05 16 12 H 0.05 2.16 8.00 -2.39 -0.02 2.14 16 13 C -0.14 -3.37 4.78 30.32 0.14 -3.23 16 14 C -0.11 -2.15 5.73 30.47 0.17 -1.98 16 15 C -0.57 -9.39 6.35 71.99 0.46 -8.93 16 16 S 2.41 64.15 5.31 -56.49 -0.30 63.85 16 17 O -0.99 -31.04 18.10 -127.40 -2.31 -33.35 16 18 O -0.99 -36.08 17.93 -127.40 -2.28 -38.37 16 19 C -0.58 -16.00 5.62 71.99 0.40 -15.59 16 20 C 0.11 4.05 4.96 44.99 0.22 4.27 16 21 C -0.21 -7.46 9.80 30.59 0.30 -7.16 16 22 C -0.20 -6.37 8.80 30.59 0.27 -6.10 16 23 H 0.25 13.82 8.32 -92.71 -0.77 13.05 16 24 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 25 H 0.07 3.37 5.32 -2.39 -0.01 3.36 16 26 H 0.09 2.49 4.60 -2.39 -0.01 2.48 16 27 H 0.09 1.70 8.09 -2.38 -0.02 1.68 16 28 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 30 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.15 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.16 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.11 3.54 8.10 -2.38 -0.02 3.52 16 35 H 0.07 2.80 6.90 -2.39 -0.02 2.78 16 36 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.07 2.44 8.01 -2.39 -0.02 2.42 16 Total: -1.00 -71.51 309.83 0.12 -71.40 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.04 Total: 16.57 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 3.47 Total: -48.81 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -1.53 Total: -78.01 kcal Atomic # 8 Polarization: -67.12 SS G_CDS: -4.59 Total: -71.71 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 64.15 SS G_CDS: -0.30 Total: 63.85 kcal Total: -71.51 0.12 -71.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328924597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.637 kcal (2) G-P(sol) polarization free energy of solvation -71.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds