Wall clock time and date at job start Mon Mar 30 2020 01:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 115.55054 * 2 1 4 4 C 1.53003 * 109.46840 * 34.33573 * 3 2 1 5 5 S 1.81404 * 109.47113 * 179.97438 * 4 3 2 6 6 O 1.42097 * 110.54460 * 291.62514 * 5 4 3 7 7 O 1.42101 * 110.54050 * 68.37024 * 5 4 3 8 8 N 1.65601 * 104.44847 * 179.97438 * 5 4 3 9 9 C 1.36936 * 119.99865 * 269.99856 * 8 5 4 10 10 H 1.07998 * 120.00223 * 307.67852 * 9 8 5 11 11 C 1.38810 * 119.99655 * 127.67819 * 9 8 5 12 12 N 1.31618 * 120.00074 * 345.42265 * 11 9 8 13 13 Si 1.86810 * 119.99965 * 165.42660 * 11 9 8 14 14 H 1.48501 * 109.46683 * 59.99773 * 13 11 9 15 15 H 1.48491 * 109.46999 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.46744 * 300.00094 * 13 11 9 17 17 C 1.46498 * 119.99914 * 90.00422 * 8 5 4 18 18 C 1.53003 * 117.49793 * 181.75445 * 17 8 5 19 19 C 1.52997 * 117.50032 * 113.13318 * 17 8 5 20 20 C 1.52999 * 117.52222 * 145.70888 * 2 1 3 21 21 C 1.52996 * 60.00464 * 107.48042 * 20 2 1 22 22 H 1.09001 * 109.46957 * 85.57621 * 1 2 3 23 23 H 1.08995 * 109.47048 * 205.58049 * 1 2 3 24 24 H 1.09002 * 109.46839 * 325.58116 * 1 2 3 25 25 H 1.08999 * 109.47548 * 274.32972 * 3 2 1 26 26 H 1.09006 * 109.47234 * 154.32776 * 3 2 1 27 27 H 1.09003 * 109.47041 * 299.99479 * 4 3 2 28 28 H 1.08998 * 109.47209 * 59.99821 * 4 3 2 29 29 H 0.97003 * 119.99945 * 177.81573 * 12 11 9 30 30 H 1.09003 * 115.54726 * 327.46142 * 17 8 5 31 31 H 1.08994 * 117.49722 * 359.97438 * 18 17 8 32 32 H 1.08992 * 117.49576 * 145.01660 * 18 17 8 33 33 H 1.08996 * 117.49673 * 214.97992 * 19 17 8 34 34 H 1.09000 * 117.49843 * 359.97085 * 19 17 8 35 35 H 1.09001 * 117.50362 * 214.97294 * 20 2 1 36 36 H 1.08999 * 117.49376 * 359.97438 * 20 2 1 37 37 H 1.08997 * 117.49691 * 252.51808 * 21 20 2 38 38 H 1.08997 * 117.49992 * 107.49079 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3351 2.3542 0.8137 5 16 2.1178 3.9907 0.8143 6 8 3.3275 3.9646 1.5595 7 8 2.0693 4.5671 -0.4836 8 7 1.1009 4.9347 1.7182 9 6 0.0777 5.6138 1.1122 10 1 0.2800 6.2497 0.2631 11 6 -1.2194 5.4846 1.5894 12 7 -1.5205 4.5104 2.4217 13 14 -2.5376 6.6934 1.0502 14 1 -2.6905 6.6331 -0.4257 15 1 -3.8273 6.3399 1.6958 16 1 -2.1429 8.0676 1.4513 17 6 1.2960 5.0435 3.1661 18 6 0.2988 5.8982 3.9510 19 6 1.7245 6.4034 3.7210 20 6 2.2369 -1.1210 0.7644 21 6 2.2365 -1.1207 -0.7655 22 1 -0.3633 0.0793 -1.0246 23 1 -0.3633 -0.9269 0.4437 24 1 -0.3633 0.8478 0.5809 25 1 2.2766 1.7417 -1.0247 26 1 3.1823 1.3087 0.4452 27 1 0.3427 2.4260 0.3685 28 1 1.2485 1.9929 1.8383 29 1 -2.4191 4.4389 2.7799 30 1 1.6909 4.1531 3.6554 31 1 -0.5021 6.3798 3.3901 32 1 0.0373 5.5700 4.9569 33 1 2.4010 6.4076 4.5756 34 1 1.8618 7.2170 3.0088 35 1 3.1721 -0.8751 1.2675 36 1 1.6120 -1.8586 1.2679 37 1 1.6112 -1.8581 -1.2687 38 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329473911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:50 Heat of formation + Delta-G solvation = -21.179969 kcal Electronic energy + Delta-G solvation = -20178.540395 eV Core-core repulsion = 17150.070529 eV Total energy + Delta-G solvation = -3028.469866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.23949 -37.22189 -35.69528 -34.53475 -32.96457 -31.86475 -31.01151 -27.96165 -24.98363 -23.76582 -22.30602 -21.31009 -20.73777 -18.74968 -18.23209 -16.89464 -16.58138 -15.56521 -15.19048 -15.09719 -14.71795 -14.13665 -13.86881 -13.53989 -13.31565 -12.73541 -12.37297 -12.13462 -11.93895 -11.78823 -11.42386 -11.40275 -11.17436 -11.04807 -10.85908 -10.79831 -10.75012 -10.67586 -10.42853 -10.37680 -10.00926 -9.76102 -9.46469 -9.40849 -9.12827 -8.73164 -7.51605 -6.55180 -4.30230 1.65345 3.11099 3.14398 3.18643 3.86650 3.92938 4.25356 4.68532 4.80678 4.89819 4.99898 5.04867 5.24609 5.27997 5.38019 5.70327 5.71318 5.76626 5.87497 5.93995 5.95393 6.04690 6.08570 6.12732 6.16413 6.21679 6.32943 6.39885 6.46361 6.53472 6.59020 6.75891 6.96465 7.24603 7.33065 7.59961 8.33500 8.72121 9.25187 10.42439 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.006906 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.012965 B = 4053.452794 C = 4622.004701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C -0.070 4.070 4 C -0.640 4.640 5 S 2.511 3.489 6 O -1.004 7.004 7 O -0.979 6.979 8 N -0.790 5.790 9 C -0.269 4.269 10 H 0.097 0.903 11 C 0.051 3.949 12 N -0.821 5.821 13 Si 0.910 3.090 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.122 3.878 18 C -0.149 4.149 19 C -0.211 4.211 20 C -0.178 4.178 21 C -0.183 4.183 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.113 0.887 29 H 0.274 0.726 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -5.984 0.192 6.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.114 4.114 3 C -0.108 4.108 4 C -0.762 4.762 5 S 2.614 3.386 6 O -0.994 6.994 7 O -0.969 6.969 8 N -0.613 5.613 9 C -0.414 4.414 10 H 0.114 0.886 11 C -0.163 4.163 12 N -0.457 5.457 13 Si 0.735 3.265 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.014 3.986 18 C -0.188 4.188 19 C -0.251 4.251 20 C -0.215 4.215 21 C -0.220 4.220 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.347 -6.017 -0.193 6.169 hybrid contribution -1.314 -0.225 0.051 1.335 sum 0.033 -6.242 -0.142 6.244 Atomic orbital electron populations 1.21496 0.91907 1.02562 1.02065 1.21453 0.95138 0.90504 1.04259 1.20805 0.97570 0.92600 0.99855 1.30913 1.12937 1.25213 1.07126 1.11084 0.76756 0.75972 0.74806 1.93369 1.47124 1.87102 1.71757 1.93386 1.87531 1.74779 1.41232 1.52511 1.45531 1.50658 1.12564 1.19390 0.85198 1.21297 1.15469 0.88595 1.25859 0.98669 0.95902 0.95899 1.70078 1.21252 1.26931 1.27390 0.86261 0.79406 0.81049 0.79789 1.19121 1.20606 1.19215 1.20822 1.02631 0.92886 0.82286 1.23077 0.92798 1.03565 0.99386 1.23358 0.98797 1.00215 1.02774 1.23154 1.02567 1.01642 0.94160 1.23041 1.02577 1.01932 0.94406 0.92486 0.93050 0.90172 0.91089 0.91487 0.85552 0.86880 0.91614 0.88076 0.87313 0.90773 0.90247 0.89251 0.88895 0.89072 0.89056 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.49 37.15 0.35 -1.46 16 2 C -0.11 -1.70 2.47 -154.51 -0.38 -2.08 16 3 C -0.07 -1.21 5.41 -26.73 -0.14 -1.36 16 4 C -0.64 -12.49 5.18 37.16 0.19 -12.30 16 5 S 2.51 58.14 5.39 -107.50 -0.58 57.56 16 6 O -1.00 -24.82 17.26 -57.54 -0.99 -25.81 16 7 O -0.98 -25.35 17.10 -57.54 -0.98 -26.34 16 8 N -0.79 -18.80 2.94 -53.43 -0.16 -18.95 16 9 C -0.27 -6.62 8.21 -15.06 -0.12 -6.74 16 10 H 0.10 2.44 7.69 -52.49 -0.40 2.03 16 11 C 0.05 1.17 3.14 -17.43 -0.05 1.12 16 12 N -0.82 -19.14 11.64 55.49 0.65 -18.50 16 13 Si 0.91 18.30 29.44 -169.99 -5.00 13.30 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 C 0.12 2.70 5.41 -67.93 -0.37 2.33 16 18 C -0.15 -3.06 8.36 -26.73 -0.22 -3.28 16 19 C -0.21 -4.21 10.38 -26.73 -0.28 -4.48 16 20 C -0.18 -2.35 9.82 -26.73 -0.26 -2.61 16 21 C -0.18 -2.31 9.97 -26.73 -0.27 -2.58 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 24 H 0.08 1.31 5.59 -51.93 -0.29 1.02 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 27 H 0.13 2.52 6.45 -51.92 -0.33 2.19 16 28 H 0.11 2.14 8.14 -51.92 -0.42 1.72 16 29 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 30 H 0.10 2.11 8.13 -51.93 -0.42 1.69 16 31 H 0.11 2.39 5.12 -51.93 -0.27 2.13 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.09 1.19 8.05 -51.93 -0.42 0.78 16 36 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -28.12 321.24 -9.68 -37.79 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.89 Total: 9.56 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -1.56 Total: -33.44 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.49 Total: -37.45 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -1.98 Total: -52.15 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.00 Total: 13.30 kcal Atomic # 16 Polarization: 58.14 SS G_CDS: -0.58 Total: 57.56 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.12 -9.68 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329473911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.612 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds