Wall clock time and date at job start Mon Mar 30 2020 01:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99708 * 2 1 4 4 H 1.48495 * 109.46937 * 270.00137 * 3 2 1 5 5 H 1.48498 * 109.47216 * 30.00211 * 3 2 1 6 6 H 1.48504 * 109.46828 * 150.00180 * 3 2 1 7 7 C 1.38803 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99532 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.80995 * 99.99963 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47462 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99595 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00373 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00088 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46872 * 324.99405 * 14 13 11 16 16 C 1.52997 * 109.47277 * 84.99368 * 14 13 11 17 17 C 1.52996 * 109.47165 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46972 * 300.00293 * 17 16 14 19 19 H 1.09000 * 109.46986 * 299.99742 * 18 17 16 20 20 C 1.52996 * 109.47346 * 179.97438 * 18 17 16 21 21 O 1.42903 * 109.47094 * 64.99836 * 20 18 17 22 22 C 1.52997 * 109.47415 * 59.99860 * 18 17 16 23 23 C 1.52999 * 109.46691 * 204.99775 * 14 13 11 24 24 H 0.96995 * 120.00485 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47539 * 59.99472 * 10 9 7 26 26 H 1.09007 * 109.47305 * 299.99880 * 10 9 7 27 27 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 28 28 H 1.09000 * 109.47140 * 60.00200 * 16 14 13 29 29 H 1.09001 * 109.47375 * 300.00183 * 16 14 13 30 30 H 1.08992 * 109.47534 * 180.02562 * 17 16 14 31 31 H 1.08996 * 109.47134 * 59.99508 * 17 16 14 32 32 H 1.08998 * 109.47622 * 184.99440 * 20 18 17 33 33 H 1.09001 * 109.47244 * 305.00138 * 20 18 17 34 34 H 0.96699 * 114.00071 * 180.02562 * 21 20 18 35 35 H 1.09001 * 109.46922 * 180.02562 * 22 18 17 36 36 H 1.09000 * 109.47140 * 59.99976 * 22 18 17 37 37 H 1.08993 * 109.47839 * 59.99891 * 23 14 13 38 38 H 1.09000 * 109.47160 * 299.99453 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5731 -3.2324 -0.0002 12 8 6.3441 -2.2961 -0.0006 13 7 6.0458 -4.4946 -0.0010 14 6 7.4909 -4.7357 -0.0005 15 1 7.9880 -3.9647 -0.5893 16 6 8.0140 -4.6965 1.4367 17 6 9.5233 -4.9476 1.4371 18 6 9.8120 -6.3204 0.8264 19 1 9.3152 -7.0916 1.4150 20 6 11.3213 -6.5713 0.8262 21 8 11.7912 -6.6504 2.1734 22 6 9.2888 -6.3596 -0.6108 23 6 7.7790 -6.1087 -0.6110 24 1 -0.4850 0.8400 0.0004 25 1 3.6440 -3.4314 -0.8903 26 1 3.6434 -3.4317 0.8896 27 1 5.4292 -5.2434 -0.0011 28 1 7.5170 -5.4674 2.0254 29 1 7.8087 -3.7183 1.8716 30 1 9.8959 -4.9201 2.4609 31 1 10.0200 -4.1764 0.8484 32 1 11.5338 -7.5084 0.3117 33 1 11.8256 -5.7525 0.3130 34 1 12.7422 -6.8082 2.2496 35 1 9.4942 -7.3378 -1.0456 36 1 9.7856 -5.5883 -1.1995 37 1 7.4063 -6.1366 -1.6349 38 1 7.2819 -6.8796 -0.0223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330463614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:55 Heat of formation + Delta-G solvation = -116.733909 kcal Electronic energy + Delta-G solvation = -18648.173126 eV Core-core repulsion = 15615.559731 eV Total energy + Delta-G solvation = -3032.613395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95127 -38.49600 -36.68111 -34.08932 -32.42600 -31.04436 -30.91560 -28.77295 -25.64457 -25.17925 -22.99454 -21.53885 -20.40127 -20.00473 -17.90015 -17.57763 -16.42581 -16.37001 -15.51500 -15.10182 -14.96903 -14.87870 -14.30735 -13.98262 -13.88143 -13.37725 -13.14386 -12.81841 -12.78067 -12.41539 -12.27497 -12.00826 -11.40037 -11.36878 -11.25451 -10.99932 -10.88010 -10.66708 -10.57482 -10.47828 -10.19830 -9.83955 -9.44642 -8.99799 -8.88932 -8.48278 -6.90102 -6.27765 -3.99230 2.79195 3.01395 3.32304 3.35661 3.51839 3.67238 3.83790 4.34400 4.38384 4.53431 4.65509 4.74506 4.78292 5.00300 5.03955 5.11280 5.18035 5.22681 5.25546 5.29915 5.35344 5.43587 5.55020 5.69070 5.78227 5.81469 5.88146 5.96095 6.03982 6.10080 6.20569 6.26510 6.64805 7.26949 7.67552 7.95384 8.42888 8.54471 9.18483 10.81508 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.049146 B = 0.003177 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.593931 B = 8812.379047 C = 9092.598026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.734 5.734 14 C 0.146 3.854 15 H 0.087 0.913 16 C -0.131 4.131 17 C -0.106 4.106 18 C -0.089 4.089 19 H 0.078 0.922 20 C 0.079 3.921 21 O -0.573 6.573 22 C -0.109 4.109 23 C -0.124 4.124 24 H 0.271 0.729 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.398 0.602 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.377 0.623 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.903 -16.342 0.085 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.387 5.387 14 C 0.042 3.958 15 H 0.105 0.895 16 C -0.169 4.169 17 C -0.145 4.145 18 C -0.108 4.108 19 H 0.096 0.904 20 C 0.002 3.998 21 O -0.378 6.378 22 C -0.147 4.147 23 C -0.162 4.162 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.232 0.768 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.370 -14.556 0.202 25.857 hybrid contribution -0.579 -0.826 -0.180 1.025 sum 20.792 -15.382 0.022 25.863 Atomic orbital electron populations 1.69940 1.05916 1.27755 1.48157 1.24721 0.94458 0.98980 0.93202 0.86727 0.81905 0.83255 0.79917 1.19223 1.19964 1.15908 1.22324 0.88322 0.97522 1.58679 0.89407 1.84779 1.09208 1.00189 1.97419 1.23288 0.94187 1.04281 1.05749 1.20278 0.90505 0.82445 0.75081 1.90692 1.58756 1.42205 1.47786 1.46059 1.07333 1.07937 1.77368 1.20928 0.81094 0.97213 0.96613 0.89515 1.21945 0.95552 1.02695 0.96741 1.21473 0.95625 0.95701 1.01656 1.21203 0.93766 0.98981 0.96833 0.90381 1.22249 0.95074 0.99345 0.83177 1.86496 1.28452 1.95793 1.27044 1.21462 0.95286 1.02111 0.95806 1.21780 0.96361 0.96530 1.01534 0.91955 0.88567 0.88513 0.76811 0.91879 0.91040 0.91036 0.91927 0.93807 0.93586 0.77597 0.91397 0.91364 0.90990 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.77 13.97 55.49 0.78 -25.99 16 2 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.97 27.74 -169.99 -4.72 17.25 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.43 6.16 36.00 0.22 -2.21 16 11 C 0.53 9.51 7.81 -10.99 -0.09 9.42 16 12 O -0.52 -11.28 15.52 5.55 0.09 -11.19 16 13 N -0.73 -9.45 5.08 -53.80 -0.27 -9.72 16 14 C 0.15 1.67 2.45 -67.93 -0.17 1.51 16 15 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 16 C -0.13 -1.49 5.49 -26.73 -0.15 -1.64 16 17 C -0.11 -1.06 5.10 -26.73 -0.14 -1.19 16 18 C -0.09 -0.72 2.43 -90.62 -0.22 -0.94 16 19 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 20 C 0.08 0.55 6.43 37.16 0.24 0.79 16 21 O -0.57 -4.54 13.19 -35.23 -0.46 -5.01 16 22 C -0.11 -0.77 5.20 -26.70 -0.14 -0.91 16 23 C -0.12 -1.01 5.40 -26.70 -0.14 -1.15 16 24 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 26 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 27 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.38 1.29 9.12 45.56 0.42 1.71 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -34.84 324.18 -7.45 -42.29 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.39 Total: 1.56 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.36 Total: -8.44 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.50 Total: -35.71 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.38 Total: -16.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.84 -7.45 -42.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330463614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.445 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds