Wall clock time and date at job start Mon Mar 30 2020 01:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47342 * 2 1 4 4 C 1.52993 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.51329 * 54.89977 * 4 3 2 6 6 C 1.53295 * 109.51439 * 175.00151 * 4 3 2 7 7 N 1.47154 * 108.38678 * 172.27487 * 6 4 3 8 8 C 1.34775 * 120.97848 * 129.44324 * 7 6 4 9 9 O 1.21282 * 120.00577 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99768 * 180.02562 * 8 7 6 11 11 S 1.81000 * 109.47038 * 179.97438 * 10 8 7 12 12 C 1.76209 * 99.99875 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99972 * 359.97438 * 12 11 10 14 14 C 1.38798 * 119.99599 * 180.02562 * 12 11 10 15 15 N 1.31634 * 119.99397 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00627 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00578 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00328 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00039 * 16 14 12 20 20 C 1.47144 * 118.03852 * 309.71393 * 7 6 4 21 21 C 1.52889 * 108.60418 * 50.22484 * 20 7 6 22 22 O 1.42955 * 109.29882 * 307.93734 * 21 20 7 23 23 H 1.09003 * 109.47290 * 60.00109 * 1 2 3 24 24 H 1.09000 * 109.47580 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47148 * 300.00007 * 1 2 3 26 26 H 1.09000 * 109.47268 * 240.00261 * 2 1 3 27 27 H 1.09003 * 109.47290 * 119.99891 * 2 1 3 28 28 H 1.09008 * 109.47005 * 59.99905 * 3 2 1 29 29 H 1.09003 * 109.47275 * 300.00478 * 3 2 1 30 30 H 1.09006 * 109.68193 * 52.55268 * 6 4 3 31 31 H 1.08999 * 109.68229 * 292.00238 * 6 4 3 32 32 H 1.09000 * 109.47235 * 59.99532 * 10 8 7 33 33 H 1.09005 * 109.46867 * 299.99572 * 10 8 7 34 34 H 0.97005 * 119.99723 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.68526 * 170.00082 * 20 7 6 36 36 H 1.09001 * 109.68508 * 290.56360 * 20 7 6 37 37 H 1.09000 * 109.58001 * 187.92427 * 21 20 7 38 38 H 1.09002 * 109.40722 * 67.84646 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8519 -0.8414 6 6 4.0819 2.8819 -0.1265 7 7 5.5413 2.8736 0.0620 8 6 6.3584 3.4806 -0.8214 9 8 5.8935 4.0443 -1.7894 10 6 7.8499 3.4580 -0.6069 11 16 8.6666 4.3506 -1.9532 12 6 10.3494 4.1719 -1.4621 13 1 10.5940 3.6325 -0.5591 14 6 11.3604 4.7255 -2.2354 15 7 12.6176 4.5915 -1.8688 16 14 10.9373 5.6592 -3.7970 17 1 10.9138 4.7181 -4.9454 18 1 9.6023 6.2925 -3.6486 19 1 11.9593 6.7092 -4.0382 20 6 6.0826 2.1778 1.2401 21 6 5.4727 0.7772 1.3024 22 8 4.0490 0.8779 1.2223 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.6167 3.5052 0.6372 31 1 3.8417 3.2718 -1.1157 32 1 8.1991 2.4256 -0.5915 33 1 8.0876 3.9362 0.3433 34 1 13.3242 4.9781 -2.4094 35 1 7.1666 2.1015 1.1556 36 1 5.8222 2.7289 2.1438 37 1 5.7517 0.2987 2.2411 38 1 5.8433 0.1834 0.4668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330490776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:55 Heat of formation + Delta-G solvation = -114.944778 kcal Electronic energy + Delta-G solvation = -18971.992551 eV Core-core repulsion = 15939.456738 eV Total energy + Delta-G solvation = -3032.535813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44910 -39.53733 -36.31635 -35.57041 -34.68735 -32.76773 -31.05844 -29.29283 -27.90771 -26.87931 -24.48693 -22.87805 -21.91912 -20.64546 -19.62137 -18.37230 -17.78094 -17.20567 -16.98128 -16.89055 -16.08684 -16.05188 -15.63955 -15.48274 -15.00709 -14.82914 -14.78693 -13.99068 -13.87513 -13.65444 -13.38970 -13.07333 -13.03772 -12.96813 -12.67305 -12.43788 -12.09329 -11.93610 -11.89218 -11.63917 -11.47452 -11.20575 -11.18379 -10.94276 -10.55396 -9.67303 -9.03242 -8.53139 -6.24698 0.92996 1.30155 1.42071 1.42855 1.50924 1.92415 2.23458 2.63363 2.72130 2.85152 3.42334 3.58492 3.89987 3.93026 4.01015 4.07508 4.15796 4.23942 4.28459 4.36090 4.41833 4.50629 4.65394 4.68160 4.77875 4.86400 4.88472 4.97167 5.07126 5.26486 5.33050 5.37321 5.49967 5.69278 6.09582 6.10818 6.12912 6.91934 6.96250 8.59140 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.003643 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.857175 B = 7684.529923 C = 8123.900413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.106 4.106 4 C 0.084 3.916 5 H 0.054 0.946 6 C 0.082 3.918 7 N -0.613 5.613 8 C 0.535 3.465 9 O -0.560 6.560 10 C -0.106 4.106 11 S -0.176 6.176 12 C -0.527 4.527 13 H 0.064 0.936 14 C 0.046 3.954 15 N -0.916 5.916 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.238 1.238 19 H -0.259 1.259 20 C 0.065 3.935 21 C 0.049 3.951 22 O -0.380 6.380 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.277 0.723 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.482 -9.398 7.925 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.144 4.144 4 C 0.025 3.975 5 H 0.072 0.928 6 C -0.040 4.040 7 N -0.347 5.347 8 C 0.323 3.677 9 O -0.438 6.438 10 C -0.257 4.257 11 S 0.050 5.950 12 C -0.675 4.675 13 H 0.082 0.918 14 C -0.159 4.159 15 N -0.554 5.554 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.161 1.161 19 H -0.183 1.183 20 C -0.058 4.058 21 C -0.028 4.028 22 O -0.299 6.299 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.154 0.846 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.096 -8.595 6.637 24.621 hybrid contribution 1.423 -0.134 0.322 1.465 sum -20.673 -8.729 6.958 23.495 Atomic orbital electron populations 1.21763 0.94893 1.02048 1.02111 1.21428 0.96433 0.95765 1.02022 1.21611 0.90311 0.98676 1.03800 1.22510 0.96251 0.91499 0.87195 0.92797 1.22429 0.79025 0.98678 1.03880 1.48140 1.06907 1.54506 1.25171 1.20073 0.88092 0.77640 0.81871 1.90674 1.77349 1.45071 1.30746 1.23271 0.93728 1.05441 1.03267 1.84748 1.02820 1.72488 1.34904 1.22427 0.90607 1.41072 1.13387 0.91770 1.25549 0.93990 0.95779 1.00616 1.70014 0.99920 1.45022 1.40406 0.85880 0.80636 0.80018 0.79931 1.18681 1.16145 1.18288 1.22679 1.00804 0.94443 0.87826 1.23035 0.80578 0.94670 1.04538 1.87946 1.21426 1.82651 1.37873 0.92434 0.92336 0.92384 0.92488 0.91905 0.90264 0.89455 0.89493 0.89553 0.86858 0.86854 0.91325 0.87816 0.88711 0.84587 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.66 5.83 30.59 0.18 -1.48 16 3 C -0.11 -1.56 4.93 30.59 0.15 -1.41 16 4 C 0.08 1.60 2.77 30.69 0.09 1.68 16 5 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 6 C 0.08 1.87 5.93 86.35 0.51 2.38 16 7 N -0.61 -16.15 3.03 -818.15 -2.48 -18.62 16 8 C 0.54 19.10 7.73 87.66 0.68 19.78 16 9 O -0.56 -24.36 15.33 -3.04 -0.05 -24.40 16 10 C -0.11 -4.03 4.53 71.24 0.32 -3.71 16 11 S -0.18 -8.91 18.55 -56.49 -1.05 -9.96 16 12 C -0.53 -30.47 10.04 67.95 0.68 -29.78 16 13 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 14 C 0.05 2.70 5.50 84.86 0.47 3.17 16 15 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16 16 Si 0.91 44.84 27.74 68.60 1.90 46.75 16 17 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 C 0.06 1.22 6.51 86.22 0.56 1.78 16 21 C 0.05 0.79 6.97 71.95 0.50 1.29 16 22 O -0.38 -7.21 9.94 -148.98 -1.48 -8.69 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.97 7.83 -2.39 -0.02 0.95 16 28 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.09 2.25 7.08 -2.39 -0.02 2.24 16 32 H 0.11 3.91 7.65 -2.40 -0.02 3.89 16 33 H 0.11 3.95 8.02 -2.39 -0.02 3.93 16 34 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 35 H 0.10 1.89 6.05 -2.39 -0.01 1.88 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -71.43 322.70 3.00 -68.43 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.99 Total: 8.92 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.85 Total: -7.31 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -2.17 Total: -73.74 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.53 Total: -33.09 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -71.43 3.00 -68.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330490776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.510 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds