Wall clock time and date at job start Mon Mar 30 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.51366 * 305.09613 * 4 3 2 6 6 C 1.53293 * 109.51415 * 184.99643 * 4 3 2 7 7 N 1.47151 * 108.38666 * 187.77237 * 6 4 3 8 8 C 1.34786 * 120.98010 * 230.51423 * 7 6 4 9 9 O 1.21278 * 120.00110 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99564 * 179.97438 * 8 7 6 11 11 S 1.80994 * 109.46851 * 179.97438 * 10 8 7 12 12 C 1.76206 * 100.00208 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99351 * 0.02562 * 12 11 10 14 14 C 1.38790 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00300 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99851 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47062 * 59.99975 * 16 14 12 18 18 H 1.48502 * 109.47106 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47353 * 299.99978 * 16 14 12 20 20 C 1.47145 * 118.03678 * 50.53565 * 7 6 4 21 21 C 1.53293 * 108.38539 * 309.46462 * 20 7 6 22 22 O 1.42961 * 109.51610 * 65.24847 * 4 3 2 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.08999 * 109.68242 * 307.50213 * 6 4 3 31 31 H 1.09002 * 109.67841 * 68.01463 * 6 4 3 32 32 H 1.08992 * 109.47420 * 300.00400 * 10 8 7 33 33 H 1.09000 * 109.46854 * 60.00533 * 10 8 7 34 34 H 0.97007 * 120.00668 * 179.97438 * 15 14 12 35 35 H 1.09007 * 109.67815 * 69.18643 * 20 7 6 36 36 H 1.08996 * 109.68458 * 189.70131 * 20 7 6 37 37 H 1.09003 * 109.51282 * 172.22326 * 21 20 7 38 38 H 1.08994 * 109.51733 * 292.32641 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8520 0.8415 6 6 4.0820 2.8820 0.1265 7 7 5.5412 2.8738 -0.0632 8 6 6.3589 3.4814 0.8193 9 8 5.8946 4.0463 1.7869 10 6 7.8503 3.4589 0.6036 11 16 8.6678 4.3535 1.9479 12 6 10.3503 4.1747 1.4558 13 1 10.5942 3.6341 0.5533 14 6 11.3618 4.7286 2.2280 15 7 11.0644 5.3871 3.3282 16 14 13.1454 4.5396 1.7059 17 1 13.3373 5.1550 0.3680 18 1 14.0245 5.2160 2.6932 19 1 13.4922 3.0972 1.6415 20 6 6.0812 2.1831 -1.2449 21 6 5.4719 0.7777 -1.3040 22 8 4.0481 0.8782 -1.2228 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.6160 3.5054 -0.6366 31 1 3.8420 3.2717 1.1157 32 1 8.1996 2.4266 0.5884 33 1 8.0871 3.9367 -0.3470 34 1 11.7714 5.7740 3.8682 35 1 5.8165 2.7362 -2.1462 36 1 7.1657 2.1105 -1.1640 37 1 5.7501 0.2994 -2.2431 38 1 5.8439 0.1842 -0.4690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330490777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:57 Heat of formation + Delta-G solvation = -93.431756 kcal Electronic energy + Delta-G solvation = -18926.416854 eV Core-core repulsion = 15894.813915 eV Total energy + Delta-G solvation = -3031.602938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24142 -38.26998 -35.40657 -34.49631 -32.45395 -31.83092 -29.53610 -28.34327 -26.00532 -25.39954 -23.58230 -21.91882 -21.14761 -19.20753 -17.76570 -16.95491 -16.77822 -15.82570 -15.59360 -15.17319 -14.88555 -14.82516 -14.77934 -14.03860 -13.64063 -13.55976 -13.10072 -13.05608 -12.60861 -12.37767 -12.07542 -11.94608 -11.64634 -11.33569 -11.23176 -11.06638 -11.05746 -10.90044 -10.79383 -10.64826 -10.19787 -9.84335 -9.41448 -9.08307 -8.48511 -8.26673 -6.53488 -6.23742 -3.95083 2.81203 2.98371 3.21820 3.22750 3.27296 3.50602 3.55590 4.17811 4.40021 4.66857 4.77256 4.78695 4.83326 4.95607 4.98840 5.11007 5.11929 5.20597 5.35650 5.38275 5.43249 5.51888 5.59966 5.61092 5.66544 5.73794 5.79095 5.83096 5.89871 6.01547 6.06082 6.12486 6.48790 6.97510 7.46233 7.56762 8.32449 8.48008 9.21245 10.83629 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.043130 B = 0.003458 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.047761 B = 8096.027644 C = 8496.118145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.078 3.922 5 H 0.064 0.936 6 C 0.085 3.915 7 N -0.624 5.624 8 C 0.536 3.464 9 O -0.515 6.515 10 C -0.151 4.151 11 S -0.060 6.060 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.073 3.927 21 C 0.049 3.951 22 O -0.376 6.376 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.832 -10.622 -10.372 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.019 3.981 5 H 0.082 0.918 6 C -0.038 4.038 7 N -0.362 5.362 8 C 0.324 3.676 9 O -0.389 6.389 10 C -0.301 4.301 11 S 0.167 5.833 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.050 4.050 21 C -0.029 4.029 22 O -0.295 6.295 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.563 -9.717 -8.902 21.166 hybrid contribution 1.984 -0.674 -1.346 2.490 sum -14.579 -10.391 -10.247 20.628 Atomic orbital electron populations 1.21779 0.95898 1.01549 1.01755 1.21465 0.95577 0.96353 1.02505 1.21603 0.91966 0.98082 1.03131 1.22550 0.94955 0.93197 0.87379 0.91846 1.22229 0.80531 0.96956 1.04109 1.48159 1.06264 1.56381 1.25362 1.20375 0.88476 0.77194 0.81529 1.90691 1.76944 1.42496 1.28741 1.23550 0.93639 1.05713 1.07220 1.85417 1.01656 1.68972 1.27280 1.22810 0.91349 1.41343 1.12944 0.90974 1.24991 0.99558 0.94465 0.94535 1.70004 1.33646 1.33169 1.13446 0.86219 0.82279 0.78516 0.78455 1.19912 1.20783 1.19928 1.22414 1.00371 0.93557 0.88680 1.22964 0.81354 0.95670 1.02921 1.87927 1.20719 1.82855 1.38009 0.92835 0.92742 0.92790 0.92183 0.91228 0.90843 0.90213 0.91075 0.88122 0.89261 0.89180 0.92085 0.90659 0.88334 0.87672 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.99 5.83 -26.73 -0.16 -1.15 16 3 C -0.11 -0.96 4.92 -26.73 -0.13 -1.09 16 4 C 0.08 0.85 2.78 -26.58 -0.07 0.77 16 5 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 6 C 0.08 1.09 5.93 -3.54 -0.02 1.07 16 7 N -0.62 -9.23 3.02 -172.28 -0.52 -9.75 16 8 C 0.54 10.35 7.73 -10.98 -0.08 10.27 16 9 O -0.51 -11.86 15.33 5.56 0.09 -11.78 16 10 C -0.15 -3.06 4.53 36.01 0.16 -2.90 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 12 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 14 C 0.07 2.10 5.49 -17.44 -0.10 2.01 16 15 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 16 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.07 0.83 6.54 -3.54 -0.02 0.80 16 21 C 0.05 0.48 6.99 37.31 0.26 0.74 16 22 O -0.38 -4.20 9.93 -35.23 -0.35 -4.55 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.62 7.83 -51.93 -0.41 0.21 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.42 7.08 -51.93 -0.37 1.05 16 32 H 0.09 1.66 7.66 -51.92 -0.40 1.26 16 33 H 0.09 1.70 8.01 -51.91 -0.42 1.28 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.10 1.07 6.05 -51.93 -0.31 0.76 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -33.68 325.42 -7.98 -41.66 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.10 Total: -2.44 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.50 Total: -5.08 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.21 Total: -35.13 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.26 Total: -16.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.68 -7.98 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330490777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.772 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds